RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 PRKRIP1Q9H875 184 aaPredicted RBP24.27■■□□□ 1.48
CNOT3-209ENST00000617930 PPP6R1Q9UPN7 881 aa24.25■■□□□ 1.47
CNOT3-209ENST00000617930 ARID4BQ4LE39 1312 aaPredicted RBP24.23■■□□□ 1.47
CNOT3-209ENST00000617930 MYO5BQ9ULV0 1848 aa24.23■■□□□ 1.47
CNOT3-209ENST00000617930 IDI1Q13907 227 aa24.23■■□□□ 1.47
CNOT3-209ENST00000617930 POLR3GLQ9BT43 218 aa24.23■■□□□ 1.47
CNOT3-209ENST00000617930 SPATA31D1Q6ZQQ2 1576 aa24.21■■□□□ 1.47
CNOT3-209ENST00000617930 PPLO60437 1756 aa24.21■■□□□ 1.47
CNOT3-209ENST00000617930 ADGRF5Q8IZF2 1346 aa24.2■■□□□ 1.47
CNOT3-209ENST00000617930 CHGAP10645 457 aaKnown RBP24.2■■□□□ 1.47
CNOT3-209ENST00000617930 MYOM2P54296 1465 aa24.19■■□□□ 1.46
CNOT3-209ENST00000617930 TESK2Q96S53 571 aa24.18■■□□□ 1.46
CNOT3-209ENST00000617930 TMEM131LA2VDJ0 1609 aa24.18■■□□□ 1.46
CNOT3-209ENST00000617930 ZMYM3Q14202 1370 aa24.18■■□□□ 1.46
CNOT3-209ENST00000617930 LAMC1P11047 1609 aa24.17■■□□□ 1.46
CNOT3-209ENST00000617930 NRXN1Q9ULB1 1477 aa24.17■■□□□ 1.46
CNOT3-209ENST00000617930 NEXMIFQ5QGS0 1516 aa24.16■■□□□ 1.46
CNOT3-209ENST00000617930 SLC52A1Q9NWF4 448 aa24.13■■□□□ 1.45
CNOT3-209ENST00000617930 DISP3Q9P2K9 1392 aa24.11■■□□□ 1.45
CNOT3-209ENST00000617930 NUTM2DQ5VT03 806 aaPredicted RBP24.1■■□□□ 1.45
CNOT3-209ENST00000617930 SUPT16HQ9Y5B9 1047 aaKnown RBP24.1■■□□□ 1.45
CNOT3-209ENST00000617930 KIAA1210Q9ULL0 1709 aa24.09■■□□□ 1.45
CNOT3-209ENST00000617930 CFAP70Q5T0N1 1121 aa24.09■■□□□ 1.45
CNOT3-209ENST00000617930 IQGAP1P46940 1657 aa24.09■■□□□ 1.45
CNOT3-209ENST00000617930 FER1L4A9Z1Z3 1794 aa24.08■■□□□ 1.45
CNOT3-209ENST00000617930 PIK3C2GO75747 1445 aa24.08■■□□□ 1.44
CNOT3-209ENST00000617930 CNGB1Q14028 1251 aaPredicted RBP24.08■■□□□ 1.44
CNOT3-209ENST00000617930 STAC3Q96MF2 364 aa24.08■■□□□ 1.44
CNOT3-209ENST00000617930 CEBPAP49715 358 aaPredicted RBP24.06■■□□□ 1.44
CNOT3-209ENST00000617930 C3P01024 1663 aa24.06■■□□□ 1.44
CNOT3-209ENST00000617930 ESF1Q9H501 851 aaKnown RBP24.05■■□□□ 1.44
CNOT3-209ENST00000617930 A2ML1A8K2U0 1454 aa24.05■■□□□ 1.44
CNOT3-209ENST00000617930 RPGRIP1LQ68CZ1 1315 aa24.03■■□□□ 1.44
CNOT3-209ENST00000617930 MRS2Q9HD23 443 aa24.03■■□□□ 1.44
CNOT3-209ENST00000617930 ADGRB1O14514 1584 aa24■■□□□ 1.43
CNOT3-209ENST00000617930 TNRQ92752 1358 aa24■■□□□ 1.43
CNOT3-209ENST00000617930 PER1O15534 1290 aaPredicted RBP24■■□□□ 1.43
CNOT3-209ENST00000617930 HNRNPUQ00839 825 aaKnown RBP eCLIP23.99■■□□□ 1.43
CNOT3-209ENST00000617930 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
CNOT3-209ENST00000617930 SCAF11Q99590 1463 aaKnown RBP23.99■■□□□ 1.43
CNOT3-209ENST00000617930 FAM9BQ8IZU0 186 aa23.98■■□□□ 1.43
CNOT3-209ENST00000617930 ZFYVE9O95405 1425 aa23.97■■□□□ 1.43
CNOT3-209ENST00000617930 C14orf93Q9H972 538 aaKnown RBP23.96■■□□□ 1.43
CNOT3-209ENST00000617930 ASXL1Q8IXJ9 1541 aa23.96■■□□□ 1.43
CNOT3-209ENST00000617930 TMF1P82094 1093 aa23.95■■□□□ 1.42
CNOT3-209ENST00000617930 SETBP1Q9Y6X0 1596 aa23.95■■□□□ 1.42
CNOT3-209ENST00000617930 UBR1Q8IWV7 1749 aa23.94■■□□□ 1.42
CNOT3-209ENST00000617930 ADAMTSL3P82987 1691 aa23.94■■□□□ 1.42
CNOT3-209ENST00000617930 RIMS1Q86UR5 1692 aaKnown RBP23.94■■□□□ 1.42
CNOT3-209ENST00000617930 PLPPR3Q6T4P5 718 aa23.94■■□□□ 1.42
CNOT3-209ENST00000617930 TMEM132EQ6IEE7 984 aa23.93■■□□□ 1.42
CNOT3-209ENST00000617930 VGFO15240 615 aaPredicted RBP23.93■■□□□ 1.42
CNOT3-209ENST00000617930 RIMS2Q9UQ26 1411 aa23.91■■□□□ 1.42
CNOT3-209ENST00000617930 STAG3Q9UJ98 1225 aa23.91■■□□□ 1.42
CNOT3-209ENST00000617930 PANK3Q9H999 370 aa23.9■■□□□ 1.42
CNOT3-209ENST00000617930 KDM5AP29375 1690 aaKnown RBP23.88■■□□□ 1.41
CNOT3-209ENST00000617930 PTPRMP28827 1452 aa23.87■■□□□ 1.41
CNOT3-209ENST00000617930 NRXN3Q9Y4C0 1643 aa23.87■■□□□ 1.41
CNOT3-209ENST00000617930 SETD1AO15047 1707 aaKnown RBP23.86■■□□□ 1.41
CNOT3-209ENST00000617930 MYO3AQ8NEV4 1616 aa23.86■■□□□ 1.41
CNOT3-209ENST00000617930 ALKQ9UM73 1620 aa23.85■■□□□ 1.41
CNOT3-209ENST00000617930 PNISRQ8TF01 805 aaKnown RBP23.85■■□□□ 1.41
CNOT3-209ENST00000617930 PARD3Q8TEW0 1356 aa23.85■■□□□ 1.41
CNOT3-209ENST00000617930 RALBP1Q15311 655 aa23.84■■□□□ 1.41
CNOT3-209ENST00000617930 NLRP1Q9C000 1473 aa23.84■■□□□ 1.41
CNOT3-209ENST00000617930 TRAK1Q9UPV9 953 aa23.83■■□□□ 1.41
CNOT3-209ENST00000617930 MYBBP1AQ9BQG0 1328 aaKnown RBP23.83■■□□□ 1.41
CNOT3-209ENST00000617930 ARHGEF28Q8N1W1 1705 aaKnown RBP23.83■■□□□ 1.4
CNOT3-209ENST00000617930 MYT1Q01538 1121 aa23.82■■□□□ 1.4
CNOT3-209ENST00000617930 KTN1Q86UP2 1357 aaKnown RBP23.81■■□□□ 1.4
CNOT3-209ENST00000617930 TMEM2Q9UHN6 1383 aa23.81■■□□□ 1.4
CNOT3-209ENST00000617930 EIF3AQ14152 1382 aaKnown RBP23.8■■□□□ 1.4
CNOT3-209ENST00000617930 CC2D1BQ5T0F9 858 aaKnown RBP23.79■■□□□ 1.4
CNOT3-209ENST00000617930 QRICH2Q9H0J4 1663 aa23.78■■□□□ 1.4
CNOT3-209ENST00000617930 TMC1Q8TDI8 760 aa23.77■■□□□ 1.4
CNOT3-209ENST00000617930 BRD4O60885 1362 aaPredicted RBP23.77■■□□□ 1.4
CNOT3-209ENST00000617930 LTKP29376 864 aa23.77■■□□□ 1.4
CNOT3-209ENST00000617930 ZBED9Q6R2W3 1325 aa23.76■■□□□ 1.39
CNOT3-209ENST00000617930 LRPPRCP42704 1394 aaKnown RBP23.74■■□□□ 1.39
CNOT3-209ENST00000617930 MYOM1P52179 1685 aa23.74■■□□□ 1.39
CNOT3-209ENST00000617930 ARHGAP23Q9P227 1491 aa23.74■■□□□ 1.39
CNOT3-209ENST00000617930 YTHDC2Q9H6S0 1430 aaKnown RBP23.73■■□□□ 1.39
CNOT3-209ENST00000617930 CENPJQ9HC77 1338 aaPredicted RBP23.73■■□□□ 1.39
CNOT3-209ENST00000617930 SENP3-EIF4A1A0A087X0R7 540 aa23.73■■□□□ 1.39
CNOT3-209ENST00000617930 SLIT1O75093 1534 aa23.73■■□□□ 1.39
CNOT3-209ENST00000617930 FKBP8Q14318 412 aa23.72■■□□□ 1.39
CNOT3-209ENST00000617930 CDCA8Q53HL2 280 aa23.72■■□□□ 1.39
CNOT3-209ENST00000617930 STK26Q9P289 416 aa23.72■■□□□ 1.39
CNOT3-209ENST00000617930 CEP170BQ9Y4F5 1589 aaPredicted RBP23.72■■□□□ 1.39
CNOT3-209ENST00000617930 AMER1Q5JTC6 1135 aaPredicted RBP23.72■■□□□ 1.39
CNOT3-209ENST00000617930 METP08581 1390 aa23.72■■□□□ 1.39
CNOT3-209ENST00000617930 SBNO2Q9Y2G9 1366 aa23.72■■□□□ 1.39
CNOT3-209ENST00000617930 NEFLP07196 543 aa23.71■■□□□ 1.39
CNOT3-209ENST00000617930 NLRP13Q86W25 1043 aa23.71■■□□□ 1.39
CNOT3-209ENST00000617930 ADAMTS13Q76LX8 1427 aa23.7■■□□□ 1.38
CNOT3-209ENST00000617930 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.7■■□□□ 1.38
CNOT3-209ENST00000617930 BCANQ96GW7 911 aa23.7■■□□□ 1.38
CNOT3-209ENST00000617930 TULP4Q9NRJ4 1543 aa23.68■■□□□ 1.38
CNOT3-209ENST00000617930 ZNF142P52746 1687 aaPredicted RBP23.66■■□□□ 1.38
CNOT3-209ENST00000617930 SAFB2Q14151 953 aaKnown RBP eCLIP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms