RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 A2ML1A8K2U0 1454 aa16.78■□□□□ 0.28
PDPN-211ENST00000617617 NBPF8Q3BBV2 869 aa16.78■□□□□ 0.28
PDPN-211ENST00000617617 IDI1Q13907 227 aa16.77■□□□□ 0.27
PDPN-211ENST00000617617 FBXO31Q5XUX0 539 aaPredicted RBP16.76■□□□□ 0.27
PDPN-211ENST00000617617 DCAF11Q8TEB1 546 aa16.75■□□□□ 0.27
PDPN-211ENST00000617617 PIK3C2GO75747 1445 aa16.75■□□□□ 0.27
PDPN-211ENST00000617617 SETD1AO15047 1707 aaKnown RBP16.74■□□□□ 0.27
PDPN-211ENST00000617617 SLIT1O75093 1534 aa16.73■□□□□ 0.27
PDPN-211ENST00000617617 CEP170BQ9Y4F5 1589 aaPredicted RBP16.71■□□□□ 0.27
PDPN-211ENST00000617617 ARHGAP23Q9P227 1491 aa16.71■□□□□ 0.27
PDPN-211ENST00000617617 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
PDPN-211ENST00000617617 RGL3Q3MIN7 710 aa16.7■□□□□ 0.26
PDPN-211ENST00000617617 PTPRMP28827 1452 aa16.69■□□□□ 0.26
PDPN-211ENST00000617617 NRXN3Q9Y4C0 1643 aa16.69■□□□□ 0.26
PDPN-211ENST00000617617 ADGRB1O14514 1584 aa16.69■□□□□ 0.26
PDPN-211ENST00000617617 VGFO15240 615 aaPredicted RBP16.66■□□□□ 0.26
PDPN-211ENST00000617617 RIMS2Q9UQ26 1411 aa16.66■□□□□ 0.26
PDPN-211ENST00000617617 KNDC1Q76NI1 1749 aa16.65■□□□□ 0.26
PDPN-211ENST00000617617 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
PDPN-211ENST00000617617 ROCK2O75116 1388 aaKnown RBP16.64■□□□□ 0.25
PDPN-211ENST00000617617 TMEM2Q9UHN6 1383 aa16.64■□□□□ 0.25
PDPN-211ENST00000617617 ADGRF5Q8IZF2 1346 aa16.64■□□□□ 0.25
PDPN-211ENST00000617617 ALKQ9UM73 1620 aa16.64■□□□□ 0.25
PDPN-211ENST00000617617 SCAF11Q99590 1463 aaKnown RBP16.63■□□□□ 0.25
PDPN-211ENST00000617617 DIP2AQ14689 1571 aa16.63■□□□□ 0.25
PDPN-211ENST00000617617 EIF4G2P78344 907 aaKnown RBP eCLIP16.63■□□□□ 0.25
PDPN-211ENST00000617617 ZNF326Q5BKZ1 582 aaKnown RBP16.63■□□□□ 0.25
PDPN-211ENST00000617617 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.63■□□□□ 0.25
PDPN-211ENST00000617617 C14orf93Q9H972 538 aaKnown RBP16.63■□□□□ 0.25
PDPN-211ENST00000617617 ARHGEF28Q8N1W1 1705 aaKnown RBP16.63■□□□□ 0.25
PDPN-211ENST00000617617 USP47Q96K76 1375 aa16.62■□□□□ 0.25
PDPN-211ENST00000617617 ASXL1Q8IXJ9 1541 aa16.61■□□□□ 0.25
PDPN-211ENST00000617617 CEBPAP49715 358 aaPredicted RBP16.6■□□□□ 0.25
PDPN-211ENST00000617617 HDGFP51858 240 aaKnown RBP16.6■□□□□ 0.25
PDPN-211ENST00000617617 CHGAP10645 457 aaKnown RBP16.6■□□□□ 0.25
PDPN-211ENST00000617617 DLC1Q96QB1 1528 aa16.58■□□□□ 0.25
PDPN-211ENST00000617617 HSPA5P11021 654 aaKnown RBP16.58■□□□□ 0.25
PDPN-211ENST00000617617 CARD11Q9BXL7 1154 aa16.58■□□□□ 0.25
PDPN-211ENST00000617617 MED14O60244 1454 aa16.58■□□□□ 0.24
PDPN-211ENST00000617617 PLEKHG1Q9ULL1 1385 aa16.58■□□□□ 0.24
PDPN-211ENST00000617617 STAG3Q9UJ98 1225 aa16.56■□□□□ 0.24
PDPN-211ENST00000617617 NBPF1Q3BBV0 1214 aa16.56■□□□□ 0.24
PDPN-211ENST00000617617 QRICH2Q9H0J4 1663 aa16.56■□□□□ 0.24
PDPN-211ENST00000617617 EIF3AQ14152 1382 aaKnown RBP16.56■□□□□ 0.24
PDPN-211ENST00000617617 SBNO2Q9Y2G9 1366 aa16.55■□□□□ 0.24
PDPN-211ENST00000617617 THEMISQ8N1K5 641 aaPredicted RBP16.55■□□□□ 0.24
PDPN-211ENST00000617617 CFAP70Q5T0N1 1121 aa16.53■□□□□ 0.24
PDPN-211ENST00000617617 CPS1P31327 1500 aa16.52■□□□□ 0.24
PDPN-211ENST00000617617 TECPR2O15040 1411 aa16.52■□□□□ 0.23
PDPN-211ENST00000617617 ADAMTS13Q76LX8 1427 aa16.52■□□□□ 0.23
PDPN-211ENST00000617617 SLC24A1O60721 1099 aa16.51■□□□□ 0.23
PDPN-211ENST00000617617 XRN1Q8IZH2 1706 aaKnown RBP16.5■□□□□ 0.23
PDPN-211ENST00000617617 YTHDC2Q9H6S0 1430 aaKnown RBP16.49■□□□□ 0.23
PDPN-211ENST00000617617 KDM4FA0A1W2PPD8 638 aa16.49■□□□□ 0.23
PDPN-211ENST00000617617 CHD2O14647 1828 aaKnown RBP16.48■□□□□ 0.23
PDPN-211ENST00000617617 LRPPRCP42704 1394 aaKnown RBP16.48■□□□□ 0.23
PDPN-211ENST00000617617 CCDC7Q96M83 1385 aa16.48■□□□□ 0.23
PDPN-211ENST00000617617 TESK2Q96S53 571 aa16.47■□□□□ 0.23
PDPN-211ENST00000617617 EID1Q9Y6B2 187 aa16.47■□□□□ 0.23
PDPN-211ENST00000617617 PIK3R4Q99570 1358 aa16.47■□□□□ 0.23
PDPN-211ENST00000617617 SIRT1Q96EB6 747 aa16.46■□□□□ 0.23
PDPN-211ENST00000617617 ABCC11Q96J66 1382 aa16.46■□□□□ 0.23
PDPN-211ENST00000617617 ST20-MTHFSA0A0A6YYL1 179 aa16.46■□□□□ 0.23
PDPN-211ENST00000617617 LTKP29376 864 aa16.46■□□□□ 0.22
PDPN-211ENST00000617617 MYOM1P52179 1685 aa16.45■□□□□ 0.22
PDPN-211ENST00000617617 FAM135BQ49AJ0 1406 aa16.45■□□□□ 0.22
PDPN-211ENST00000617617 WASHC2AQ641Q2 1341 aa16.45■□□□□ 0.22
PDPN-211ENST00000617617 ADGRB2O60241 1585 aa16.44■□□□□ 0.22
PDPN-211ENST00000617617 TXNDC2Q86VQ3 553 aa16.43■□□□□ 0.22
PDPN-211ENST00000617617 NWD1Q149M9 1564 aa16.43■□□□□ 0.22
PDPN-211ENST00000617617 TBX22Q9Y458 520 aa16.43■□□□□ 0.22
PDPN-211ENST00000617617 KIF7Q2M1P5 1343 aa16.42■□□□□ 0.22
PDPN-211ENST00000617617 LMTK3Q96Q04 1460 aa16.42■□□□□ 0.22
PDPN-211ENST00000617617 NUTM2DQ5VT03 806 aaPredicted RBP16.42■□□□□ 0.22
PDPN-211ENST00000617617 PUS7Q96PZ0 661 aaKnown RBP16.42■□□□□ 0.22
PDPN-211ENST00000617617 PTCH1Q13635 1447 aa16.41■□□□□ 0.22
PDPN-211ENST00000617617 C11orf95C9JLR9 678 aaPredicted RBP16.41■□□□□ 0.22
PDPN-211ENST00000617617 METP08581 1390 aa16.41■□□□□ 0.22
PDPN-211ENST00000617617 STRCQ7RTU9 1775 aa16.4■□□□□ 0.22
PDPN-211ENST00000617617 CENPJQ9HC77 1338 aaPredicted RBP16.4■□□□□ 0.22
PDPN-211ENST00000617617 ANKLE2Q86XL3 938 aa16.4■□□□□ 0.22
PDPN-211ENST00000617617 DIEXFQ68CQ4 756 aaKnown RBP16.39■□□□□ 0.21
PDPN-211ENST00000617617 HIRIP3Q9BW71 556 aaPredicted RBP16.39■□□□□ 0.21
PDPN-211ENST00000617617 NPHP4O75161 1426 aaPredicted RBP16.39■□□□□ 0.21
PDPN-211ENST00000617617 TULP4Q9NRJ4 1543 aa16.38■□□□□ 0.21
PDPN-211ENST00000617617 DISP3Q9P2K9 1392 aa16.38■□□□□ 0.21
PDPN-211ENST00000617617 TMF1P82094 1093 aa16.38■□□□□ 0.21
PDPN-211ENST00000617617 CDCA8Q53HL2 280 aa16.37■□□□□ 0.21
PDPN-211ENST00000617617 TMEM132EQ6IEE7 984 aa16.37■□□□□ 0.21
PDPN-211ENST00000617617 PTPRUQ92729 1446 aa16.37■□□□□ 0.21
PDPN-211ENST00000617617 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.35■□□□□ 0.21
PDPN-211ENST00000617617 PLPPR3Q6T4P5 718 aa16.35■□□□□ 0.21
PDPN-211ENST00000617617 TRAK1Q9UPV9 953 aa16.33■□□□□ 0.21
PDPN-211ENST00000617617 USP32Q8NFA0 1604 aa16.32■□□□□ 0.2
PDPN-211ENST00000617617 TOPAZ1Q8N9V7 1692 aa16.32■□□□□ 0.2
PDPN-211ENST00000617617 NINLQ9Y2I6 1382 aa16.31■□□□□ 0.2
PDPN-211ENST00000617617 ITSN1Q15811 1721 aa16.3■□□□□ 0.2
PDPN-211ENST00000617617 NKTRP30414 1462 aaKnown RBP16.3■□□□□ 0.2
PDPN-211ENST00000617617 EVC2Q86UK5 1308 aa16.29■□□□□ 0.2
PDPN-211ENST00000617617 ROBO2Q9HCK4 1378 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms