RNA–Protein interactions for RNA: ENST00000616939.4

GPN1-212, Transcript of GPN-loop GTPase 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GPN1, Length 1,832 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN1-212ENST00000616939 FRAT1Q92837 279 aaPredicted RBP20.27■□□□□ 0.84
GPN1-212ENST00000616939 JPH4Q96JJ6 628 aa20.27■□□□□ 0.84
GPN1-212ENST00000616939 HNRNPMP52272 730 aaKnown RBP eCLIP20.27■□□□□ 0.84
GPN1-212ENST00000616939 GOLGA2Q08379 1002 aa20.27■□□□□ 0.84
GPN1-212ENST00000616939 RTN4Q9NQC3 1192 aaKnown RBP20.27■□□□□ 0.84
GPN1-212ENST00000616939 ADAMTS8Q9UP79 889 aa20.27■□□□□ 0.84
GPN1-212ENST00000616939 KIAA1210Q9ULL0 1709 aa20.26■□□□□ 0.83
GPN1-212ENST00000616939 NINLQ9Y2I6 1382 aa20.26■□□□□ 0.83
GPN1-212ENST00000616939 PPP2R1AP30153 589 aa20.25■□□□□ 0.83
GPN1-212ENST00000616939 SKAP1Q86WV1 359 aa20.25■□□□□ 0.83
GPN1-212ENST00000616939 BRPF3Q9ULD4 1205 aa20.25■□□□□ 0.83
GPN1-212ENST00000616939 CEP152O94986 1710 aa20.25■□□□□ 0.83
GPN1-212ENST00000616939 WDR43Q15061 677 aaKnown RBP eCLIP20.25■□□□□ 0.83
GPN1-212ENST00000616939 SLFN5Q08AF3 891 aa20.24■□□□□ 0.83
GPN1-212ENST00000616939 NGEFQ8N5V2 710 aa20.24■□□□□ 0.83
GPN1-212ENST00000616939 CHMP7Q8WUX9 453 aaPredicted RBP20.24■□□□□ 0.83
GPN1-212ENST00000616939 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
GPN1-212ENST00000616939 SCAPERQ9BY12 1400 aa20.23■□□□□ 0.83
GPN1-212ENST00000616939 KDM5AP29375 1690 aaKnown RBP20.22■□□□□ 0.83
GPN1-212ENST00000616939 CDCA8Q53HL2 280 aa20.21■□□□□ 0.83
GPN1-212ENST00000616939 AMER1Q5JTC6 1135 aaPredicted RBP20.21■□□□□ 0.83
GPN1-212ENST00000616939 ZMYM3Q14202 1370 aa20.21■□□□□ 0.83
GPN1-212ENST00000616939 TTC37Q6PGP7 1564 aa20.2■□□□□ 0.82
GPN1-212ENST00000616939 ERCC6Q03468 1493 aa20.2■□□□□ 0.82
GPN1-212ENST00000616939 SCAF11Q99590 1463 aaKnown RBP20.19■□□□□ 0.82
GPN1-212ENST00000616939 NEURL4Q96JN8 1562 aa20.19■□□□□ 0.82
GPN1-212ENST00000616939 STAC3Q96MF2 364 aa20.19■□□□□ 0.82
GPN1-212ENST00000616939 KNSTRNQ9Y448 316 aa20.19■□□□□ 0.82
GPN1-212ENST00000616939 FAM43AQ8N2R8 423 aa20.18■□□□□ 0.82
GPN1-212ENST00000616939 TRPM2O94759 1503 aa20.18■□□□□ 0.82
GPN1-212ENST00000616939 SLC4A3P48751 1232 aa20.18■□□□□ 0.82
GPN1-212ENST00000616939 RGL3Q3MIN7 710 aa20.18■□□□□ 0.82
GPN1-212ENST00000616939 ARHGAP5Q13017 1502 aa20.17■□□□□ 0.82
GPN1-212ENST00000616939 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.16■□□□□ 0.82
GPN1-212ENST00000616939 MAPK8IP3Q9UPT6 1336 aa20.15■□□□□ 0.82
GPN1-212ENST00000616939 CGNL1Q0VF96 1302 aa20.15■□□□□ 0.82
GPN1-212ENST00000616939 FRAT2O75474 233 aaPredicted RBP20.14■□□□□ 0.81
GPN1-212ENST00000616939 USP19O94966 1318 aa20.13■□□□□ 0.81
GPN1-212ENST00000616939 NLRP1Q9C000 1473 aa20.13■□□□□ 0.81
GPN1-212ENST00000616939 SHROOM2Q13796 1616 aa20.13■□□□□ 0.81
GPN1-212ENST00000616939 E9PSI1 815 aa20.13■□□□□ 0.81
GPN1-212ENST00000616939 PDE3AQ14432 1141 aa20.13■□□□□ 0.81
GPN1-212ENST00000616939 AAMPQ13685 434 aa20.12■□□□□ 0.81
GPN1-212ENST00000616939 BECN1Q14457 450 aa20.1■□□□□ 0.81
GPN1-212ENST00000616939 RSPH6AQ9H0K4 717 aa20.1■□□□□ 0.81
GPN1-212ENST00000616939 DEPDC5O75140 1603 aa20.1■□□□□ 0.81
GPN1-212ENST00000616939 RGS3P49796 1198 aa20.09■□□□□ 0.81
GPN1-212ENST00000616939 PTPRTO14522 1441 aa20.08■□□□□ 0.81
GPN1-212ENST00000616939 CLTCL1P53675 1640 aa20.08■□□□□ 0.8
GPN1-212ENST00000616939 MYO3AQ8NEV4 1616 aa20.08■□□□□ 0.8
GPN1-212ENST00000616939 TET3O43151 1660 aa20.08■□□□□ 0.8
GPN1-212ENST00000616939 SLC24A1O60721 1099 aa20.07■□□□□ 0.8
GPN1-212ENST00000616939 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.07■□□□□ 0.8
GPN1-212ENST00000616939 UBE2Q2Q8WVN8 375 aa20.06■□□□□ 0.8
GPN1-212ENST00000616939 SHPRHQ149N8 1683 aa20.05■□□□□ 0.8
GPN1-212ENST00000616939 ABCC1P33527 1531 aa20.05■□□□□ 0.8
GPN1-212ENST00000616939 L1TD1Q5T7N2 865 aaKnown RBP20.04■□□□□ 0.8
GPN1-212ENST00000616939 CLUAP1Q96AJ1 413 aa20.03■□□□□ 0.8
GPN1-212ENST00000616939 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.03■□□□□ 0.89e-6■□□□□ 10.7
GPN1-212ENST00000616939 POLR3AO14802 1390 aaPredicted RBP20.02■□□□□ 0.8
GPN1-212ENST00000616939 IGHDP01880 384 aa20.02■□□□□ 0.79
GPN1-212ENST00000616939 SPINK5Q9NQ38 1064 aaPredicted RBP20.02■□□□□ 0.79
GPN1-212ENST00000616939 IFT172Q9UG01 1749 aa20.01■□□□□ 0.79
GPN1-212ENST00000616939 MYOM2P54296 1465 aa20.01■□□□□ 0.79
GPN1-212ENST00000616939 MAP3K4Q9Y6R4 1608 aa20.01■□□□□ 0.79
GPN1-212ENST00000616939 APAF1O14727 1248 aa20■□□□□ 0.79
GPN1-212ENST00000616939 BCAR3O75815 825 aa20■□□□□ 0.79
GPN1-212ENST00000616939 ERVK-7P63135 1459 aa20■□□□□ 0.79
GPN1-212ENST00000616939 CENPJQ9HC77 1338 aaPredicted RBP20■□□□□ 0.79
GPN1-212ENST00000616939 VWDEQ8N2E2 1590 aa20■□□□□ 0.79
GPN1-212ENST00000616939 USP32Q8NFA0 1604 aa19.99■□□□□ 0.79
GPN1-212ENST00000616939 IQSEC2Q5JU85 1478 aa19.99■□□□□ 0.79
GPN1-212ENST00000616939 PMFBP1Q8TBY8 1022 aa19.99■□□□□ 0.79
GPN1-212ENST00000616939 ABCA6Q8N139 1617 aa19.99■□□□□ 0.79
GPN1-212ENST00000616939 ANTXR1Q9H6X2 564 aa19.98■□□□□ 0.79
GPN1-212ENST00000616939 RTEL1-TNFRSF6BF6WH68 1400 aa19.98■□□□□ 0.79
GPN1-212ENST00000616939 FBLN2P98095 1184 aa19.97■□□□□ 0.79
GPN1-212ENST00000616939 CCDC146Q8IYE0 955 aa19.97■□□□□ 0.79
GPN1-212ENST00000616939 SBNO2Q9Y2G9 1366 aa19.97■□□□□ 0.79
GPN1-212ENST00000616939 PLCH2O75038 1416 aa19.97■□□□□ 0.79
GPN1-212ENST00000616939 ARAP3Q8WWN8 1544 aa19.96■□□□□ 0.79
GPN1-212ENST00000616939 NCBP3Q53F19 620 aaKnown RBP19.95■□□□□ 0.78
GPN1-212ENST00000616939 ZC3H13Q5T200 1668 aaKnown RBP19.95■□□□□ 0.78
GPN1-212ENST00000616939 KANK1Q14678 1352 aa19.95■□□□□ 0.78
GPN1-212ENST00000616939 TBC1D32Q96NH3 1257 aa19.95■□□□□ 0.78
GPN1-212ENST00000616939 POGKQ9P215 609 aa19.95■□□□□ 0.78
GPN1-212ENST00000616939 KIF1BO60333 1816 aa19.94■□□□□ 0.78
GPN1-212ENST00000616939 ZFYVE16Q7Z3T8 1539 aa19.94■□□□□ 0.78
GPN1-212ENST00000616939 UPF2Q9HAU5 1272 aaKnown RBP19.93■□□□□ 0.78
GPN1-212ENST00000616939 SEC24BO95487 1268 aa19.92■□□□□ 0.78
GPN1-212ENST00000616939 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
GPN1-212ENST00000616939 WWC1Q8IX03 1113 aa19.91■□□□□ 0.78
GPN1-212ENST00000616939 PHF23Q9BUL5 403 aaPredicted RBP19.9■□□□□ 0.78
GPN1-212ENST00000616939 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
GPN1-212ENST00000616939 NRXN1Q9ULB1 1477 aa19.9■□□□□ 0.78
GPN1-212ENST00000616939 CANXP27824 592 aaKnown RBP19.89■□□□□ 0.77
GPN1-212ENST00000616939 COG6Q9Y2V7 657 aa19.89■□□□□ 0.77
GPN1-212ENST00000616939 CHD1O14646 1710 aa19.89■□□□□ 0.77
GPN1-212ENST00000616939 FSD2A1L4K1 749 aa19.88■□□□□ 0.77
GPN1-212ENST00000616939 WDR63Q8IWG1 891 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms