RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 SLFN5Q08AF3 891 aa18.28■□□□□ 0.52
COL6A1-207ENST00000612273 CDCA8Q53HL2 280 aa18.28■□□□□ 0.52
COL6A1-207ENST00000612273 CDC42BPBQ9Y5S2 1711 aa18.28■□□□□ 0.52
COL6A1-207ENST00000612273 ADGRF5Q8IZF2 1346 aa18.28■□□□□ 0.52
COL6A1-207ENST00000612273 CENPQQ7L2Z9 268 aaPredicted RBP18.27■□□□□ 0.52
COL6A1-207ENST00000612273 TMEM132EQ6IEE7 984 aa18.27■□□□□ 0.52
COL6A1-207ENST00000612273 ERCC6L2Q5T890 1561 aa18.27■□□□□ 0.52
COL6A1-207ENST00000612273 BLMP54132 1417 aaPredicted RBP18.27■□□□□ 0.51
COL6A1-207ENST00000612273 CARD14Q9BXL6 1004 aa18.26■□□□□ 0.51
COL6A1-207ENST00000612273 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.26■□□□□ 0.51
COL6A1-207ENST00000612273 ARHGEF5Q12774 1597 aa18.25■□□□□ 0.51
COL6A1-207ENST00000612273 PPM1GO15355 546 aaPredicted RBP18.24■□□□□ 0.51
COL6A1-207ENST00000612273 IGHDP01880 384 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 NFKBIBQ15653 356 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 SLC12A5Q9H2X9 1139 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 FAM161AQ3B820 660 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 DDRGK1Q96HY6 314 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 TNNQ9UQP3 1299 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 WDR7Q9Y4E6 1490 aa18.24■□□□□ 0.51
COL6A1-207ENST00000612273 KDM2BQ8NHM5 1336 aa18.23■□□□□ 0.51
COL6A1-207ENST00000612273 GGT6Q6P531 493 aa18.23■□□□□ 0.51
COL6A1-207ENST00000612273 C8orf34Q49A92 452 aa18.22■□□□□ 0.51
COL6A1-207ENST00000612273 ARXQ96QS3 562 aa18.22■□□□□ 0.51
COL6A1-207ENST00000612273 E9PCH4 1651 aa18.22■□□□□ 0.51
COL6A1-207ENST00000612273 MORC1Q86VD1 984 aa18.21■□□□□ 0.51
COL6A1-207ENST00000612273 BRPF3Q9ULD4 1205 aa18.21■□□□□ 0.51
COL6A1-207ENST00000612273 PRDM15P57071 1507 aaPredicted RBP18.21■□□□□ 0.51
COL6A1-207ENST00000612273 SCAPERQ9BY12 1400 aa18.19■□□□□ 0.5
COL6A1-207ENST00000612273 PREX2Q70Z35 1606 aa18.19■□□□□ 0.5
COL6A1-207ENST00000612273 ZMYM4Q5VZL5 1548 aa18.19■□□□□ 0.5
COL6A1-207ENST00000612273 FRAT2O75474 233 aaPredicted RBP18.19■□□□□ 0.5
COL6A1-207ENST00000612273 SLKQ9H2G2 1235 aaPredicted RBP18.19■□□□□ 0.5
COL6A1-207ENST00000612273 SPRYD3Q8NCJ5 442 aa18.18■□□□□ 0.5
COL6A1-207ENST00000612273 ZNF521Q96K83 1311 aa18.18■□□□□ 0.5
COL6A1-207ENST00000612273 SEC24BO95487 1268 aa18.17■□□□□ 0.5
COL6A1-207ENST00000612273 ANO8Q9HCE9 1232 aaPredicted RBP18.17■□□□□ 0.5
COL6A1-207ENST00000612273 CENPJQ9HC77 1338 aaPredicted RBP18.17■□□□□ 0.5
COL6A1-207ENST00000612273 E9PSI1 815 aa18.16■□□□□ 0.5
COL6A1-207ENST00000612273 PLCH2O75038 1416 aa18.16■□□□□ 0.5
COL6A1-207ENST00000612273 WWC1Q8IX03 1113 aa18.15■□□□□ 0.5
COL6A1-207ENST00000612273 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.15■□□□□ 0.5
COL6A1-207ENST00000612273 DUOX2Q9NRD8 1548 aa18.15■□□□□ 0.5
COL6A1-207ENST00000612273 SCAF11Q99590 1463 aaKnown RBP18.15■□□□□ 0.5
COL6A1-207ENST00000612273 UGGT1Q9NYU2 1555 aa18.14■□□□□ 0.49
COL6A1-207ENST00000612273 TCP11L2Q8N4U5 519 aa18.14■□□□□ 0.49
COL6A1-207ENST00000612273 STK26Q9P289 416 aa18.14■□□□□ 0.49
COL6A1-207ENST00000612273 KANK1Q14678 1352 aa18.14■□□□□ 0.49
COL6A1-207ENST00000612273 MTHFSP49914 203 aa18.13■□□□□ 0.49
COL6A1-207ENST00000612273 GSE1Q14687 1217 aa18.12■□□□□ 0.49
COL6A1-207ENST00000612273 EIF3AQ14152 1382 aaKnown RBP18.12■□□□□ 0.49
COL6A1-207ENST00000612273 U2AF1L5P0DN76 240 aaPredicted RBP18.11■□□□□ 0.49
COL6A1-207ENST00000612273 U2AF1Q01081 240 aaKnown RBP eCLIP18.11■□□□□ 0.49
COL6A1-207ENST00000612273 USP35Q9P2H5 1018 aa18.11■□□□□ 0.49
COL6A1-207ENST00000612273 ATP10AO60312 1499 aa18.11■□□□□ 0.49
COL6A1-207ENST00000612273 RLBP1P12271 317 aa18.11■□□□□ 0.49
COL6A1-207ENST00000612273 ASXL1Q8IXJ9 1541 aa18.11■□□□□ 0.49
COL6A1-207ENST00000612273 U2SURPO15042 1029 aaKnown RBP18.11■□□□□ 0.49
COL6A1-207ENST00000612273 MYO5CQ9NQX4 1742 aa18.09■□□□□ 0.49
COL6A1-207ENST00000612273 MAST1Q9Y2H9 1570 aa18.09■□□□□ 0.49
COL6A1-207ENST00000612273 UNC13BO14795 1591 aa18.09■□□□□ 0.49
COL6A1-207ENST00000612273 NKTRP30414 1462 aaKnown RBP18.08■□□□□ 0.49
COL6A1-207ENST00000612273 TSR2Q969E8 191 aaKnown RBP18.08■□□□□ 0.49
COL6A1-207ENST00000612273 CABP2Q9NPB3 220 aa18.08■□□□□ 0.48
COL6A1-207ENST00000612273 IQGAP3Q86VI3 1631 aa18.07■□□□□ 0.48
COL6A1-207ENST00000612273 PCDHB15Q9Y5E8 787 aa18.07■□□□□ 0.48
COL6A1-207ENST00000612273 EIF2AK4Q9P2K8 1649 aaKnown RBP18.07■□□□□ 0.48
COL6A1-207ENST00000612273 TRMT2AQ8IZ69 625 aaKnown RBP18.06■□□□□ 0.48
COL6A1-207ENST00000612273 ABCC2Q92887 1545 aa18.06■□□□□ 0.48
COL6A1-207ENST00000612273 NSD3Q9BZ95 1437 aa18.06■□□□□ 0.48
COL6A1-207ENST00000612273 RARSP54136 660 aaKnown RBP18.04■□□□□ 0.48
COL6A1-207ENST00000612273 CGNL1Q0VF96 1302 aa18.03■□□□□ 0.48
COL6A1-207ENST00000612273 PIK3C2GO75747 1445 aa18.03■□□□□ 0.48
COL6A1-207ENST00000612273 GGNBP2Q9H3C7 697 aa18.03■□□□□ 0.48
COL6A1-207ENST00000612273 NOS1P29475 1434 aa18.03■□□□□ 0.48
COL6A1-207ENST00000612273 RUNDC1Q96C34 613 aa18.03■□□□□ 0.48
COL6A1-207ENST00000612273 CHD1O14646 1710 aa18.02■□□□□ 0.48
COL6A1-207ENST00000612273 CFAP65Q6ZU64 1925 aaKnown RBP18.02■□□□□ 0.48
COL6A1-207ENST00000612273 FTSJ3Q8IY81 847 aaKnown RBP18.02■□□□□ 0.47
COL6A1-207ENST00000612273 PDZRN3Q9UPQ7 1066 aa18.01■□□□□ 0.47
COL6A1-207ENST00000612273 SRPK2P78362 688 aaKnown RBP18.01■□□□□ 0.47
COL6A1-207ENST00000612273 ERVK-7P63135 1459 aa18.01■□□□□ 0.47
COL6A1-207ENST00000612273 FBLN1P23142 703 aa18.01■□□□□ 0.47
COL6A1-207ENST00000612273 MADDQ8WXG6 1647 aa18■□□□□ 0.47
COL6A1-207ENST00000612273 PDE3AQ14432 1141 aa18■□□□□ 0.47
COL6A1-207ENST00000612273 CFAP53Q96M91 514 aa18■□□□□ 0.47
COL6A1-207ENST00000612273 CLTCL1P53675 1640 aa17.99■□□□□ 0.47
COL6A1-207ENST00000612273 FANCAO15360 1455 aa17.99■□□□□ 0.47
COL6A1-207ENST00000612273 POGKQ9P215 609 aa17.99■□□□□ 0.47
COL6A1-207ENST00000612273 PLXNC1O60486 1568 aa17.99■□□□□ 0.47
COL6A1-207ENST00000612273 INSRP06213 1382 aa17.99■□□□□ 0.47
COL6A1-207ENST00000612273 GZF1Q9H116 711 aaPredicted RBP17.97■□□□□ 0.47
COL6A1-207ENST00000612273 SMC4Q9NTJ3 1288 aa17.97■□□□□ 0.47
COL6A1-207ENST00000612273 USP19O94966 1318 aa17.97■□□□□ 0.47
COL6A1-207ENST00000612273 ABCC1P33527 1531 aa17.97■□□□□ 0.47
COL6A1-207ENST00000612273 MFAP1P55081 439 aaKnown RBP17.97■□□□□ 0.47
COL6A1-207ENST00000612273 EIF5BO60841 1220 aaKnown RBP17.96■□□□□ 0.47
COL6A1-207ENST00000612273 ITPRIPQ8IWB1 547 aa17.96■□□□□ 0.47
COL6A1-207ENST00000612273 UPF2Q9HAU5 1272 aaKnown RBP17.96■□□□□ 0.47
COL6A1-207ENST00000612273 RAPGEF3O95398 923 aa17.96■□□□□ 0.47
COL6A1-207ENST00000612273 MINK1Q8N4C8 1332 aaPredicted RBP17.96■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms