RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 IQGAP3Q86VI3 1631 aa21.18■□□□□ 0.98
LIG1-218ENST00000599322 TMEM2Q9UHN6 1383 aa21.17■□□□□ 0.98
LIG1-218ENST00000599322 NAIPQ13075 1403 aa21.17■□□□□ 0.98
LIG1-218ENST00000599322 MYO5BQ9ULV0 1848 aa21.15■□□□□ 0.98
LIG1-218ENST00000599322 HFM1A2PYH4 1435 aa21.14■□□□□ 0.98
LIG1-218ENST00000599322 ACIN1Q9UKV3 1341 aaKnown RBP21.14■□□□□ 0.97
LIG1-218ENST00000599322 PPP1R15AO75807 674 aaPredicted RBP21.14■□□□□ 0.97
LIG1-218ENST00000599322 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.12■□□□□ 0.97
LIG1-218ENST00000599322 ADGRB3O60242 1522 aa21.11■□□□□ 0.97
LIG1-218ENST00000599322 E9PCH4 1651 aa21.09■□□□□ 0.97
LIG1-218ENST00000599322 SLC4A1APQ9BWU0 796 aaKnown RBP21.09■□□□□ 0.97
LIG1-218ENST00000599322 SENP3Q9H4L4 574 aaPredicted RBP21.05■□□□□ 0.96
LIG1-218ENST00000599322 ZNF326Q5BKZ1 582 aaKnown RBP21.04■□□□□ 0.96
LIG1-218ENST00000599322 RIMS2Q9UQ26 1411 aa21.04■□□□□ 0.96
LIG1-218ENST00000599322 NWD1Q149M9 1564 aa21.03■□□□□ 0.96
LIG1-218ENST00000599322 SLC26A8Q96RN1 970 aa21.02■□□□□ 0.96
LIG1-218ENST00000599322 TMEM131LA2VDJ0 1609 aa21.02■□□□□ 0.96
LIG1-218ENST00000599322 CHD2O14647 1828 aaKnown RBP21.01■□□□□ 0.95
LIG1-218ENST00000599322 TMEM94Q12767 1356 aa20.99■□□□□ 0.95
LIG1-218ENST00000599322 PLEKHG1Q9ULL1 1385 aa20.98■□□□□ 0.95
LIG1-218ENST00000599322 ZFYVE9O95405 1425 aa20.98■□□□□ 0.95
LIG1-218ENST00000599322 KCNA6P17658 529 aa20.98■□□□□ 0.95
LIG1-218ENST00000599322 ROBO1Q9Y6N7 1651 aa20.98■□□□□ 0.95
LIG1-218ENST00000599322 SPHKAPQ2M3C7 1700 aa20.98■□□□□ 0.95
LIG1-218ENST00000599322 SETD5Q9C0A6 1442 aa20.96■□□□□ 0.95
LIG1-218ENST00000599322 NKTRP30414 1462 aaKnown RBP20.96■□□□□ 0.95
LIG1-218ENST00000599322 NUTM2DQ5VT03 806 aaPredicted RBP20.95■□□□□ 0.94
LIG1-218ENST00000599322 FAM135BQ49AJ0 1406 aa20.95■□□□□ 0.94
LIG1-218ENST00000599322 PROSER2Q86WR7 435 aaPredicted RBP20.94■□□□□ 0.94
LIG1-218ENST00000599322 RBM33Q96EV2 1170 aaKnown RBP20.94■□□□□ 0.94
LIG1-218ENST00000599322 MPHOSPH9Q99550 1183 aa20.94■□□□□ 0.94
LIG1-218ENST00000599322 PHF23Q9BUL5 403 aaPredicted RBP20.94■□□□□ 0.94
LIG1-218ENST00000599322 TBX22Q9Y458 520 aa20.94■□□□□ 0.94
LIG1-218ENST00000599322 TRPM2O94759 1503 aa20.93■□□□□ 0.94
LIG1-218ENST00000599322 VGFO15240 615 aaPredicted RBP20.88■□□□□ 0.93
LIG1-218ENST00000599322 RPGRIP1LQ68CZ1 1315 aa20.87■□□□□ 0.93
LIG1-218ENST00000599322 RGS17Q9UGC6 210 aaPredicted RBP20.87■□□□□ 0.93
LIG1-218ENST00000599322 PHLPP1O60346 1717 aa20.87■□□□□ 0.93
LIG1-218ENST00000599322 CCDC144AA2RUR9 1427 aa20.87■□□□□ 0.93
LIG1-218ENST00000599322 KIF1BO60333 1816 aa20.86■□□□□ 0.93
LIG1-218ENST00000599322 FOXD1Q16676 465 aa20.86■□□□□ 0.93
LIG1-218ENST00000599322 CLTCL1P53675 1640 aa20.86■□□□□ 0.93
LIG1-218ENST00000599322 PIK3R4Q99570 1358 aa20.85■□□□□ 0.93
LIG1-218ENST00000599322 RAB3GAP2Q9H2M9 1393 aa20.85■□□□□ 0.93
LIG1-218ENST00000599322 C14orf37Q86TY3 774 aa20.85■□□□□ 0.93
LIG1-218ENST00000599322 ADAMTS13Q76LX8 1427 aa20.84■□□□□ 0.93
LIG1-218ENST00000599322 DIP2AQ14689 1571 aa20.84■□□□□ 0.93
LIG1-218ENST00000599322 MSH6P52701 1360 aa20.84■□□□□ 0.93
LIG1-218ENST00000599322 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.82■□□□□ 0.92
LIG1-218ENST00000599322 HRCP23327 699 aa20.82■□□□□ 0.92
LIG1-218ENST00000599322 AMOTL2Q9Y2J4 779 aa20.8■□□□□ 0.92
LIG1-218ENST00000599322 COL16A1Q07092 1604 aaPredicted RBP20.79■□□□□ 0.92
LIG1-218ENST00000599322 NRXN3Q9Y4C0 1643 aa20.79■□□□□ 0.92
LIG1-218ENST00000599322 RGL3Q3MIN7 710 aa20.79■□□□□ 0.92
LIG1-218ENST00000599322 SLAIN2Q9P270 581 aa20.78■□□□□ 0.92
LIG1-218ENST00000599322 NCOA3Q9Y6Q9 1424 aa20.77■□□□□ 0.91
LIG1-218ENST00000599322 NEXMIFQ5QGS0 1516 aa20.75■□□□□ 0.91
LIG1-218ENST00000599322 SETBP1Q9Y6X0 1596 aa20.75■□□□□ 0.91
LIG1-218ENST00000599322 XRN1Q8IZH2 1706 aaKnown RBP20.74■□□□□ 0.91
LIG1-218ENST00000599322 PTPRUQ92729 1446 aa20.74■□□□□ 0.91
LIG1-218ENST00000599322 ATF3P18847 181 aa20.73■□□□□ 0.91
LIG1-218ENST00000599322 ANKRD30BQ9BXX2 1392 aa20.72■□□□□ 0.91
LIG1-218ENST00000599322 POTEAQ6S8J7 498 aa20.72■□□□□ 0.91
LIG1-218ENST00000599322 C19orf44Q9H6X5 657 aa20.72■□□□□ 0.91
LIG1-218ENST00000599322 CADPS2Q86UW7 1296 aa20.71■□□□□ 0.91
LIG1-218ENST00000599322 AHDC1Q5TGY3 1603 aaPredicted RBP20.71■□□□□ 0.91
LIG1-218ENST00000599322 JCADQ9P266 1359 aa20.7■□□□□ 0.9
LIG1-218ENST00000599322 SHPRHQ149N8 1683 aa20.69■□□□□ 0.9
LIG1-218ENST00000599322 SETD1AO15047 1707 aaKnown RBP20.69■□□□□ 0.9
LIG1-218ENST00000599322 METP08581 1390 aa20.68■□□□□ 0.9
LIG1-218ENST00000599322 LRP6O75581 1613 aa20.66■□□□□ 0.9
LIG1-218ENST00000599322 SPATA31E1Q6ZUB1 1445 aa20.65■□□□□ 0.9
LIG1-218ENST00000599322 NALCNQ8IZF0 1738 aa20.64■□□□□ 0.89
LIG1-218ENST00000599322 PPLO60437 1756 aa20.63■□□□□ 0.89
LIG1-218ENST00000599322 NHSL1Q5SYE7 1610 aa20.63■□□□□ 0.89
LIG1-218ENST00000599322 ADGRF5Q8IZF2 1346 aa20.62■□□□□ 0.89
LIG1-218ENST00000599322 DCCP43146 1447 aa20.61■□□□□ 0.89
LIG1-218ENST00000599322 STAC3Q96MF2 364 aa20.6■□□□□ 0.89
LIG1-218ENST00000599322 ASXL1Q8IXJ9 1541 aa20.59■□□□□ 0.89
LIG1-218ENST00000599322 BRINP3Q76B58 766 aa20.59■□□□□ 0.89
LIG1-218ENST00000599322 SPATA31A6Q5VVP1 1343 aa20.58■□□□□ 0.89
LIG1-218ENST00000599322 MST1RQ04912 1400 aa20.58■□□□□ 0.88
LIG1-218ENST00000599322 STK26Q9P289 416 aa20.57■□□□□ 0.88
LIG1-218ENST00000599322 PTCH1Q13635 1447 aa20.55■□□□□ 0.88
LIG1-218ENST00000599322 DCAF11Q8TEB1 546 aa20.55■□□□□ 0.88
LIG1-218ENST00000599322 KDM2AQ9Y2K7 1162 aa20.55■□□□□ 0.88
LIG1-218ENST00000599322 ADGRL3Q9HAR2 1447 aa20.54■□□□□ 0.88
LIG1-218ENST00000599322 C14orf93Q9H972 538 aaKnown RBP20.53■□□□□ 0.88
LIG1-218ENST00000599322 DHX57Q6P158 1386 aaKnown RBP20.53■□□□□ 0.88
LIG1-218ENST00000599322 PIK3C2GO75747 1445 aa20.53■□□□□ 0.88
LIG1-218ENST00000599322 TMEM132EQ6IEE7 984 aa20.52■□□□□ 0.88
LIG1-218ENST00000599322 MYOM2P54296 1465 aa20.51■□□□□ 0.87
LIG1-218ENST00000599322 LRPPRCP42704 1394 aaKnown RBP20.51■□□□□ 0.87
LIG1-218ENST00000599322 ROBO2Q9HCK4 1378 aa20.51■□□□□ 0.87
LIG1-218ENST00000599322 IFT172Q9UG01 1749 aa20.51■□□□□ 0.87
LIG1-218ENST00000599322 TRIM26Q12899 539 aaPredicted RBP20.5■□□□□ 0.87
LIG1-218ENST00000599322 CFAP70Q5T0N1 1121 aa20.5■□□□□ 0.87
LIG1-218ENST00000599322 MEX3CQ5U5Q3 659 aaKnown RBP20.5■□□□□ 0.87
LIG1-218ENST00000599322 ABCC11Q96J66 1382 aa20.49■□□□□ 0.87
LIG1-218ENST00000599322 LAMC1P11047 1609 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms