RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 KDM5AP29375 1690 aaKnown RBP26.95■■□□□ 1.9
LIG1-216ENST00000598938 XIRP1Q702N8 1843 aaKnown RBP26.95■■□□□ 1.9
LIG1-216ENST00000598938 SPHKAPQ2M3C7 1700 aa26.93■■□□□ 1.9
LIG1-216ENST00000598938 PIK3C2BO00750 1634 aa26.9■■□□□ 1.9
LIG1-216ENST00000598938 SLC52A1Q9NWF4 448 aa26.89■■□□□ 1.9
LIG1-216ENST00000598938 TRPM2O94759 1503 aa26.88■■□□□ 1.89
LIG1-216ENST00000598938 IDI1Q13907 227 aa26.87■■□□□ 1.89
LIG1-216ENST00000598938 LTKP29376 864 aa26.85■■□□□ 1.89
LIG1-216ENST00000598938 FOXD1Q16676 465 aa26.85■■□□□ 1.89
LIG1-216ENST00000598938 TXNDC2Q86VQ3 553 aa26.85■■□□□ 1.89
LIG1-216ENST00000598938 EID1Q9Y6B2 187 aa26.85■■□□□ 1.89
LIG1-216ENST00000598938 PCGF6Q9BYE7 350 aa26.84■■□□□ 1.89
LIG1-216ENST00000598938 ADGRB3O60242 1522 aa26.82■■□□□ 1.88
LIG1-216ENST00000598938 TMEM2Q9UHN6 1383 aa26.82■■□□□ 1.88
LIG1-216ENST00000598938 FAM135BQ49AJ0 1406 aa26.81■■□□□ 1.88
LIG1-216ENST00000598938 CLTCL1P53675 1640 aa26.8■■□□□ 1.88
LIG1-216ENST00000598938 TMEM131LA2VDJ0 1609 aa26.77■■□□□ 1.88
LIG1-216ENST00000598938 SENP3Q9H4L4 574 aaPredicted RBP26.74■■□□□ 1.87
LIG1-216ENST00000598938 STAG3Q9UJ98 1225 aa26.74■■□□□ 1.87
LIG1-216ENST00000598938 ANKRD30BQ9BXX2 1392 aa26.73■■□□□ 1.87
LIG1-216ENST00000598938 NWD1Q149M9 1564 aa26.73■■□□□ 1.87
LIG1-216ENST00000598938 NKTRP30414 1462 aaKnown RBP26.73■■□□□ 1.87
LIG1-216ENST00000598938 ROBO1Q9Y6N7 1651 aa26.72■■□□□ 1.87
LIG1-216ENST00000598938 CCDC144AA2RUR9 1427 aa26.72■■□□□ 1.87
LIG1-216ENST00000598938 RGS17Q9UGC6 210 aaPredicted RBP26.71■■□□□ 1.87
LIG1-216ENST00000598938 TMEM94Q12767 1356 aa26.71■■□□□ 1.87
LIG1-216ENST00000598938 MYO5BQ9ULV0 1848 aa26.7■■□□□ 1.87
LIG1-216ENST00000598938 KCNA6P17658 529 aa26.69■■□□□ 1.86
LIG1-216ENST00000598938 DHX57Q6P158 1386 aaKnown RBP26.69■■□□□ 1.86
LIG1-216ENST00000598938 KIF1BO60333 1816 aa26.68■■□□□ 1.86
LIG1-216ENST00000598938 CHGAP10645 457 aaKnown RBP26.68■■□□□ 1.86
LIG1-216ENST00000598938 ZFYVE9O95405 1425 aa26.65■■□□□ 1.86
LIG1-216ENST00000598938 SPATA31E1Q6ZUB1 1445 aa26.62■■□□□ 1.85
LIG1-216ENST00000598938 RIMS2Q9UQ26 1411 aa26.62■■□□□ 1.85
LIG1-216ENST00000598938 PROSER2Q86WR7 435 aaPredicted RBP26.59■■□□□ 1.85
LIG1-216ENST00000598938 CHD2O14647 1828 aaKnown RBP26.59■■□□□ 1.85
LIG1-216ENST00000598938 MSH6P52701 1360 aa26.58■■□□□ 1.84
LIG1-216ENST00000598938 PHLPP1O60346 1717 aa26.57■■□□□ 1.84
LIG1-216ENST00000598938 NEXMIFQ5QGS0 1516 aa26.57■■□□□ 1.84
LIG1-216ENST00000598938 ZNF326Q5BKZ1 582 aaKnown RBP26.57■■□□□ 1.84
LIG1-216ENST00000598938 SLC26A8Q96RN1 970 aa26.57■■□□□ 1.84
LIG1-216ENST00000598938 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.56■■□□□ 1.84
LIG1-216ENST00000598938 HDGFP51858 240 aaKnown RBP26.55■■□□□ 1.84
LIG1-216ENST00000598938 RPGRIP1LQ68CZ1 1315 aa26.53■■□□□ 1.84
LIG1-216ENST00000598938 PLEKHG1Q9ULL1 1385 aa26.53■■□□□ 1.84
LIG1-216ENST00000598938 POTEAQ6S8J7 498 aa26.52■■□□□ 1.84
LIG1-216ENST00000598938 NCOA3Q9Y6Q9 1424 aa26.52■■□□□ 1.84
LIG1-216ENST00000598938 JCADQ9P266 1359 aa26.5■■□□□ 1.83
LIG1-216ENST00000598938 PPLO60437 1756 aa26.49■■□□□ 1.83
LIG1-216ENST00000598938 PPP1R15AO75807 674 aaPredicted RBP26.49■■□□□ 1.83
LIG1-216ENST00000598938 RGL3Q3MIN7 710 aa26.49■■□□□ 1.83
LIG1-216ENST00000598938 IFT172Q9UG01 1749 aa26.48■■□□□ 1.83
LIG1-216ENST00000598938 COL16A1Q07092 1604 aaPredicted RBP26.48■■□□□ 1.83
LIG1-216ENST00000598938 NUTM2DQ5VT03 806 aaPredicted RBP26.48■■□□□ 1.83
LIG1-216ENST00000598938 SLAIN2Q9P270 581 aa26.48■■□□□ 1.83
LIG1-216ENST00000598938 DIP2AQ14689 1571 aa26.47■■□□□ 1.83
LIG1-216ENST00000598938 RBM33Q96EV2 1170 aaKnown RBP26.45■■□□□ 1.82
LIG1-216ENST00000598938 BCANQ96GW7 911 aa26.45■■□□□ 1.82
LIG1-216ENST00000598938 SETD1AO15047 1707 aaKnown RBP26.43■■□□□ 1.82
LIG1-216ENST00000598938 VGFO15240 615 aaPredicted RBP26.43■■□□□ 1.82
LIG1-216ENST00000598938 SIN3AQ96ST3 1273 aa26.43■■□□□ 1.82
LIG1-216ENST00000598938 SETBP1Q9Y6X0 1596 aa26.42■■□□□ 1.82
LIG1-216ENST00000598938 AHDC1Q5TGY3 1603 aaPredicted RBP26.41■■□□□ 1.82
LIG1-216ENST00000598938 TBX22Q9Y458 520 aa26.41■■□□□ 1.82
LIG1-216ENST00000598938 NRXN3Q9Y4C0 1643 aa26.4■■□□□ 1.82
LIG1-216ENST00000598938 PIK3R4Q99570 1358 aa26.4■■□□□ 1.82
LIG1-216ENST00000598938 SHPRHQ149N8 1683 aa26.4■■□□□ 1.82
LIG1-216ENST00000598938 ADAMTS13Q76LX8 1427 aa26.39■■□□□ 1.82
LIG1-216ENST00000598938 MYOM2P54296 1465 aa26.39■■□□□ 1.82
LIG1-216ENST00000598938 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.39■■□□□ 1.81
LIG1-216ENST00000598938 SPATA31A6Q5VVP1 1343 aa26.39■■□□□ 1.81
LIG1-216ENST00000598938 ADGRF5Q8IZF2 1346 aa26.37■■□□□ 1.81
LIG1-216ENST00000598938 CLSPNQ9HAW4 1339 aa26.36■■□□□ 1.81
LIG1-216ENST00000598938 NRXN1Q9ULB1 1477 aa26.36■■□□□ 1.81
LIG1-216ENST00000598938 NEUROD1Q13562 356 aa26.35■■□□□ 1.81
LIG1-216ENST00000598938 LRP6O75581 1613 aa26.33■■□□□ 1.81
LIG1-216ENST00000598938 CADPS2Q86UW7 1296 aa26.33■■□□□ 1.81
LIG1-216ENST00000598938 DCAF11Q8TEB1 546 aa26.33■■□□□ 1.81
LIG1-216ENST00000598938 STAC3Q96MF2 364 aa26.33■■□□□ 1.81
LIG1-216ENST00000598938 PIK3C2GO75747 1445 aa26.32■■□□□ 1.8
LIG1-216ENST00000598938 C19orf44Q9H6X5 657 aa26.3■■□□□ 1.8
LIG1-216ENST00000598938 ZNF772Q68DY9 489 aaPredicted RBP26.29■■□□□ 1.8
LIG1-216ENST00000598938 DCCP43146 1447 aa26.29■■□□□ 1.8
LIG1-216ENST00000598938 C14orf37Q86TY3 774 aa26.28■■□□□ 1.8
LIG1-216ENST00000598938 CCER1Q8TC90 406 aaPredicted RBP26.28■■□□□ 1.8
LIG1-216ENST00000598938 L3MBTL2Q969R5 705 aa26.27■■□□□ 1.8
LIG1-216ENST00000598938 KDM2AQ9Y2K7 1162 aa26.27■■□□□ 1.8
LIG1-216ENST00000598938 ATF3P18847 181 aa26.26■■□□□ 1.79
LIG1-216ENST00000598938 METP08581 1390 aa26.24■■□□□ 1.79
LIG1-216ENST00000598938 XRN1Q8IZH2 1706 aaKnown RBP26.24■■□□□ 1.79
LIG1-216ENST00000598938 MEX3CQ5U5Q3 659 aaKnown RBP26.23■■□□□ 1.79
LIG1-216ENST00000598938 LAMC1P11047 1609 aa26.23■■□□□ 1.79
LIG1-216ENST00000598938 CDK12Q9NYV4 1490 aaPredicted RBP26.22■■□□□ 1.79
LIG1-216ENST00000598938 PTPRUQ92729 1446 aa26.22■■□□□ 1.79
LIG1-216ENST00000598938 TONSLQ96HA7 1378 aa26.21■■□□□ 1.79
LIG1-216ENST00000598938 NHSL1Q5SYE7 1610 aa26.21■■□□□ 1.79
LIG1-216ENST00000598938 C14orf93Q9H972 538 aaKnown RBP26.2■■□□□ 1.78
LIG1-216ENST00000598938 PRAG1Q86YV5 1406 aa26.2■■□□□ 1.78
LIG1-216ENST00000598938 ASXL1Q8IXJ9 1541 aa26.19■■□□□ 1.78
LIG1-216ENST00000598938 CFAP70Q5T0N1 1121 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms