RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 NRXN1Q9ULB1 1477 aa21.42■■□□□ 1.02
VRK3-207ENST00000594092 CEBPAP49715 358 aaPredicted RBP21.42■■□□□ 1.02
VRK3-207ENST00000594092 NBPF1Q3BBV0 1214 aa21.42■■□□□ 1.02
VRK3-207ENST00000594092 NEXMIFQ5QGS0 1516 aa21.41■■□□□ 1.02
VRK3-207ENST00000594092 USP47Q96K76 1375 aa21.41■■□□□ 1.02
VRK3-207ENST00000594092 ADAMTSL3P82987 1691 aa21.39■■□□□ 1.01
VRK3-207ENST00000594092 LAMC1P11047 1609 aa21.38■■□□□ 1.01
VRK3-207ENST00000594092 A2ML1A8K2U0 1454 aa21.38■■□□□ 1.01
VRK3-207ENST00000594092 STAG3Q9UJ98 1225 aa21.38■■□□□ 1.01
VRK3-207ENST00000594092 KIAA1210Q9ULL0 1709 aa21.37■■□□□ 1.01
VRK3-207ENST00000594092 RIMS1Q86UR5 1692 aaKnown RBP21.37■■□□□ 1.01
VRK3-207ENST00000594092 VGFO15240 615 aaPredicted RBP21.36■■□□□ 1.01
VRK3-207ENST00000594092 PIK3C2GO75747 1445 aa21.35■■□□□ 1.01
VRK3-207ENST00000594092 ZFYVE9O95405 1425 aa21.35■■□□□ 1.01
VRK3-207ENST00000594092 CFAP70Q5T0N1 1121 aa21.34■■□□□ 1.01
VRK3-207ENST00000594092 NUTM2DQ5VT03 806 aaPredicted RBP21.34■■□□□ 1.01
VRK3-207ENST00000594092 NLRP1Q9C000 1473 aa21.33■■□□□ 1.01
VRK3-207ENST00000594092 PLPPR3Q6T4P5 718 aa21.33■■□□□ 1.01
VRK3-207ENST00000594092 KDM5AP29375 1690 aaKnown RBP21.31■■□□□ 1
VRK3-207ENST00000594092 UBR1Q8IWV7 1749 aa21.3■■□□□ 1
VRK3-207ENST00000594092 C14orf93Q9H972 538 aaKnown RBP21.29■■□□□ 1
VRK3-207ENST00000594092 RIMS2Q9UQ26 1411 aa21.29■■□□□ 1
VRK3-207ENST00000594092 ST20-MTHFSA0A0A6YYL1 179 aa21.29■■□□□ 1
VRK3-207ENST00000594092 C11orf95C9JLR9 678 aaPredicted RBP21.27■■□□□ 1
VRK3-207ENST00000594092 IQGAP1P46940 1657 aa21.27■■□□□ 1
VRK3-207ENST00000594092 WASHC2AQ641Q2 1341 aa21.26■□□□□ 0.99
VRK3-207ENST00000594092 SCAF11Q99590 1463 aaKnown RBP21.26■□□□□ 0.99
VRK3-207ENST00000594092 SETBP1Q9Y6X0 1596 aa21.26■□□□□ 0.99
VRK3-207ENST00000594092 MYO3AQ8NEV4 1616 aa21.24■□□□□ 0.99
VRK3-207ENST00000594092 DDX10Q13206 875 aaKnown RBP21.24■□□□□ 0.99
VRK3-207ENST00000594092 ADGRB1O14514 1584 aa21.23■□□□□ 0.99
VRK3-207ENST00000594092 CCDC7Q96M83 1385 aa21.23■□□□□ 0.99
VRK3-207ENST00000594092 TMEM2Q9UHN6 1383 aa21.23■□□□□ 0.99
VRK3-207ENST00000594092 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.22■□□□□ 0.99
VRK3-207ENST00000594092 POLR1AO95602 1720 aaPredicted RBP21.22■□□□□ 0.99
VRK3-207ENST00000594092 KIF7Q2M1P5 1343 aa21.21■□□□□ 0.99
VRK3-207ENST00000594092 PTPRMP28827 1452 aa21.19■□□□□ 0.98
VRK3-207ENST00000594092 HDGFP51858 240 aaKnown RBP21.19■□□□□ 0.98
VRK3-207ENST00000594092 TMEM132EQ6IEE7 984 aa21.19■□□□□ 0.98
VRK3-207ENST00000594092 TESK2Q96S53 571 aa21.19■□□□□ 0.98
VRK3-207ENST00000594092 SENP3Q9H4L4 574 aaPredicted RBP21.19■□□□□ 0.98
VRK3-207ENST00000594092 EIF3AQ14152 1382 aaKnown RBP21.18■□□□□ 0.98
VRK3-207ENST00000594092 ALKQ9UM73 1620 aa21.18■□□□□ 0.98
VRK3-207ENST00000594092 CEP170BQ9Y4F5 1589 aaPredicted RBP21.17■□□□□ 0.98
VRK3-207ENST00000594092 SLIT1O75093 1534 aa21.16■□□□□ 0.98
VRK3-207ENST00000594092 ASXL1Q8IXJ9 1541 aa21.16■□□□□ 0.98
VRK3-207ENST00000594092 ARHGAP23Q9P227 1491 aa21.16■□□□□ 0.98
VRK3-207ENST00000594092 THEMISQ8N1K5 641 aaPredicted RBP21.15■□□□□ 0.98
VRK3-207ENST00000594092 SETD1BQ9UPS6 1966 aaKnown RBP21.15■□□□□ 0.98
VRK3-207ENST00000594092 NRXN3Q9Y4C0 1643 aa21.14■□□□□ 0.97
VRK3-207ENST00000594092 LTKP29376 864 aa21.13■□□□□ 0.97
VRK3-207ENST00000594092 ZNF142P52746 1687 aaPredicted RBP21.13■□□□□ 0.97
VRK3-207ENST00000594092 TRAK1Q9UPV9 953 aa21.13■□□□□ 0.97
VRK3-207ENST00000594092 SETD1AO15047 1707 aaKnown RBP21.11■□□□□ 0.97
VRK3-207ENST00000594092 TXNDC2Q86VQ3 553 aa21.11■□□□□ 0.97
VRK3-207ENST00000594092 MIER1Q8N108 512 aa21.11■□□□□ 0.97
VRK3-207ENST00000594092 DISP3Q9P2K9 1392 aa21.11■□□□□ 0.97
VRK3-207ENST00000594092 EID1Q9Y6B2 187 aa21.11■□□□□ 0.97
VRK3-207ENST00000594092 PLEKHG1Q9ULL1 1385 aa21.1■□□□□ 0.97
VRK3-207ENST00000594092 TMF1P82094 1093 aa21.09■□□□□ 0.97
VRK3-207ENST00000594092 POLR3GLQ9BT43 218 aa21.09■□□□□ 0.97
VRK3-207ENST00000594092 YTHDC2Q9H6S0 1430 aaKnown RBP21.08■□□□□ 0.97
VRK3-207ENST00000594092 CENPJQ9HC77 1338 aaPredicted RBP21.08■□□□□ 0.97
VRK3-207ENST00000594092 ARHGEF28Q8N1W1 1705 aaKnown RBP21.07■□□□□ 0.96
VRK3-207ENST00000594092 STK26Q9P289 416 aa21.06■□□□□ 0.96
VRK3-207ENST00000594092 SBNO2Q9Y2G9 1366 aa21.06■□□□□ 0.96
VRK3-207ENST00000594092 ADAMTS13Q76LX8 1427 aa21.05■□□□□ 0.96
VRK3-207ENST00000594092 BCANQ96GW7 911 aa21.05■□□□□ 0.96
VRK3-207ENST00000594092 METP08581 1390 aa21.04■□□□□ 0.96
VRK3-207ENST00000594092 SLC24A1O60721 1099 aa21.04■□□□□ 0.96
VRK3-207ENST00000594092 LRPPRCP42704 1394 aaKnown RBP21.03■□□□□ 0.96
VRK3-207ENST00000594092 QRICH2Q9H0J4 1663 aa21.03■□□□□ 0.96
VRK3-207ENST00000594092 KDM4FA0A1W2PPD8 638 aa21.03■□□□□ 0.96
VRK3-207ENST00000594092 MED14O60244 1454 aa21.02■□□□□ 0.96
VRK3-207ENST00000594092 ABCC11Q96J66 1382 aa21■□□□□ 0.95
VRK3-207ENST00000594092 DLC1Q96QB1 1528 aa21■□□□□ 0.95
VRK3-207ENST00000594092 CDCA8Q53HL2 280 aa20.99■□□□□ 0.95
VRK3-207ENST00000594092 ANKLE2Q86XL3 938 aa20.98■□□□□ 0.95
VRK3-207ENST00000594092 PRAM1Q96QH2 718 aa20.97■□□□□ 0.95
VRK3-207ENST00000594092 SLC26A8Q96RN1 970 aa20.97■□□□□ 0.95
VRK3-207ENST00000594092 TBX22Q9Y458 520 aa20.97■□□□□ 0.95
VRK3-207ENST00000594092 DIP2AQ14689 1571 aa20.96■□□□□ 0.95
VRK3-207ENST00000594092 TECPR2O15040 1411 aa20.95■□□□□ 0.94
VRK3-207ENST00000594092 ANP32CO43423 234 aa20.95■□□□□ 0.94
VRK3-207ENST00000594092 SAFB2Q14151 953 aaKnown RBP eCLIP20.95■□□□□ 0.94
VRK3-207ENST00000594092 POGKQ9P215 609 aa20.95■□□□□ 0.94
VRK3-207ENST00000594092 KNDC1Q76NI1 1749 aa20.95■□□□□ 0.94
VRK3-207ENST00000594092 CPS1P31327 1500 aa20.92■□□□□ 0.94
VRK3-207ENST00000594092 TULP4Q9NRJ4 1543 aa20.92■□□□□ 0.94
VRK3-207ENST00000594092 WAPLQ7Z5K2 1190 aa20.92■□□□□ 0.94
VRK3-207ENST00000594092 SIRT1Q96EB6 747 aa20.92■□□□□ 0.94
VRK3-207ENST00000594092 PTPRUQ92729 1446 aa20.92■□□□□ 0.94
VRK3-207ENST00000594092 PLEKHH1Q9ULM0 1364 aa20.91■□□□□ 0.94
VRK3-207ENST00000594092 FAM135BQ49AJ0 1406 aa20.91■□□□□ 0.94
VRK3-207ENST00000594092 EVC2Q86UK5 1308 aa20.91■□□□□ 0.94
VRK3-207ENST00000594092 MYOM1P52179 1685 aa20.9■□□□□ 0.94
VRK3-207ENST00000594092 MINK1Q8N4C8 1332 aaPredicted RBP20.89■□□□□ 0.94
VRK3-207ENST00000594092 PANK3Q9H999 370 aa20.88■□□□□ 0.93
VRK3-207ENST00000594092 ROBO2Q9HCK4 1378 aa20.88■□□□□ 0.93
VRK3-207ENST00000594092 PUS7Q96PZ0 661 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms