RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 HNRNPMP52272 730 aaKnown RBP eCLIP5.43□□□□□ -1.54
VRK3-204ENST00000593912 DDX17Q92841 729 aaKnown RBP5.43□□□□□ -1.54
VRK3-204ENST00000593912 TROQ12816 1431 aaPredicted RBP5.42□□□□□ -1.54
VRK3-204ENST00000593912 SETD5Q9C0A6 1442 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 DCAF8L1A6NGE4 600 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 GIGYF1O75420 1035 aaPredicted RBP5.42□□□□□ -1.54
VRK3-204ENST00000593912 BRINP3Q76B58 766 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 PCDH10Q9P2E7 1040 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 ZNF777Q9ULD5 760 aaPredicted RBP5.42□□□□□ -1.54
VRK3-204ENST00000593912 ATP1B4Q9UN42 357 aaPredicted RBP5.42□□□□□ -1.54
VRK3-204ENST00000593912 LRRIQ1Q96JM4 1722 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 GLI3P10071 1580 aa5.42□□□□□ -1.54
VRK3-204ENST00000593912 CAMSAP2Q08AD1 1489 aa5.41□□□□□ -1.54
VRK3-204ENST00000593912 EN1Q05925 392 aaPredicted RBP5.41□□□□□ -1.54
VRK3-204ENST00000593912 ASXL1Q8IXJ9 1541 aa5.41□□□□□ -1.54
VRK3-204ENST00000593912 GPATCH8Q9UKJ3 1502 aaKnown RBP5.41□□□□□ -1.54
VRK3-204ENST00000593912 WASHC2CQ9Y4E1 1318 aa5.41□□□□□ -1.54
VRK3-204ENST00000593912 TET3O43151 1660 aa5.4□□□□□ -1.54
VRK3-204ENST00000593912 SPHKAPQ2M3C7 1700 aa5.4□□□□□ -1.54
VRK3-204ENST00000593912 ERVK-7P63135 1459 aa5.4□□□□□ -1.54
VRK3-204ENST00000593912 CHD2O14647 1828 aaKnown RBP5.4□□□□□ -1.54
VRK3-204ENST00000593912 BAG6P46379 1132 aa5.4□□□□□ -1.54
VRK3-204ENST00000593912 PPP1R1BQ9UD71 204 aaPredicted RBP5.4□□□□□ -1.54
VRK3-204ENST00000593912 KIF3BO15066 747 aa5.39□□□□□ -1.55
VRK3-204ENST00000593912 COL13A1Q5TAT6 717 aaPredicted RBP5.39□□□□□ -1.55
VRK3-204ENST00000593912 C14orf37Q86TY3 774 aa5.39□□□□□ -1.55
VRK3-204ENST00000593912 FNBP4Q8N3X1 1017 aaPredicted RBP5.39□□□□□ -1.55
VRK3-204ENST00000593912 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.39□□□□□ -1.55
VRK3-204ENST00000593912 EID1Q9Y6B2 187 aa5.39□□□□□ -1.55
VRK3-204ENST00000593912 NINLQ9Y2I6 1382 aa5.39□□□□□ -1.55
VRK3-204ENST00000593912 CLIP1P30622 1438 aa5.39□□□□□ -1.55
VRK3-204ENST00000593912 PIK3C2BO00750 1634 aa5.38□□□□□ -1.55
VRK3-204ENST00000593912 MROH1Q8NDA8 1641 aa5.38□□□□□ -1.55
VRK3-204ENST00000593912 PRELPP51888 382 aa5.38□□□□□ -1.55
VRK3-204ENST00000593912 LRRC59Q96AG4 307 aaKnown RBP5.38□□□□□ -1.55
VRK3-204ENST00000593912 GJD4Q96KN9 370 aaPredicted RBP5.38□□□□□ -1.55
VRK3-204ENST00000593912 RALGAPBQ86X10 1494 aa5.38□□□□□ -1.55
VRK3-204ENST00000593912 TNS1Q9HBL0 1735 aaKnown RBP5.37□□□□□ -1.55
VRK3-204ENST00000593912 ATF3P18847 181 aa5.37□□□□□ -1.55
VRK3-204ENST00000593912 EZH2Q15910 746 aaKnown RBP5.37□□□□□ -1.55
VRK3-204ENST00000593912 TMEM2Q9UHN6 1383 aa5.37□□□□□ -1.55
VRK3-204ENST00000593912 CEP152O94986 1710 aa5.37□□□□□ -1.55
VRK3-204ENST00000593912 RGPD1P0DJD0 1748 aa5.37□□□□□ -1.55
VRK3-204ENST00000593912 MARF1Q9Y4F3 1742 aaKnown RBP5.37□□□□□ -1.55
VRK3-204ENST00000593912 CADPS2Q86UW7 1296 aa5.36□□□□□ -1.55
VRK3-204ENST00000593912 CDK11AQ9UQ88 783 aaPredicted RBP5.36□□□□□ -1.55
VRK3-204ENST00000593912 DHX29Q7Z478 1369 aaKnown RBP5.36□□□□□ -1.55
VRK3-204ENST00000593912 ARHGAP35Q9NRY4 1499 aa5.36□□□□□ -1.55
VRK3-204ENST00000593912 SHANK3Q9BYB0 1731 aa5.36□□□□□ -1.55
VRK3-204ENST00000593912 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.36□□□□□ -1.55
VRK3-204ENST00000593912 NRKQ7Z2Y5 1582 aa5.35□□□□□ -1.55
VRK3-204ENST00000593912 PTCH1Q13635 1447 aa5.35□□□□□ -1.55
VRK3-204ENST00000593912 SEPT12Q8IYM1 358 aa5.35□□□□□ -1.55
VRK3-204ENST00000593912 NUP188Q5SRE5 1749 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 MYOM1P52179 1685 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 GOLGB1Q14789 3259 aaKnown RBP5.34□□□□□ -1.55
VRK3-204ENST00000593912 FAM182BQ5T319 152 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 TNS4Q8IZW8 715 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 BCANQ96GW7 911 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 C19orf44Q9H6X5 657 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 SPON1Q9HCB6 807 aa5.34□□□□□ -1.55
VRK3-204ENST00000593912 MST1RQ04912 1400 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 KCNQ2O43526 872 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 HSPA6P17066 643 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 KRT27Q7Z3Y8 459 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 RREB1Q92766 1687 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 COL22A1Q8NFW1 1626 aaPredicted RBP5.33□□□□□ -1.56
VRK3-204ENST00000593912 EFCAB6Q5THR3 1501 aa5.33□□□□□ -1.56
VRK3-204ENST00000593912 NCOA3Q9Y6Q9 1424 aa5.32□□□□□ -1.56
VRK3-204ENST00000593912 PCNTO95613 3336 aa5.32□□□□□ -1.56
VRK3-204ENST00000593912 MYOM2P54296 1465 aa5.32□□□□□ -1.56
VRK3-204ENST00000593912 KIAA1107Q9UPP5 1409 aa5.31□□□□□ -1.56
VRK3-204ENST00000593912 STAG3Q9UJ98 1225 aa5.31□□□□□ -1.56
VRK3-204ENST00000593912 DISP2A7MBM2 1401 aa5.31□□□□□ -1.56
VRK3-204ENST00000593912 ZNF644Q9H582 1327 aaPredicted RBP5.3□□□□□ -1.56
VRK3-204ENST00000593912 A0A0G2JS52 829 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 MYT1Q01538 1121 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 UNC5CLQ8IV45 518 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 CAMKK2Q96RR4 588 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 PLEKHH2Q8IVE3 1493 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 FMN1Q68DA7 1419 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 MYO5BQ9ULV0 1848 aa5.3□□□□□ -1.56
VRK3-204ENST00000593912 SLIT2O94813 1529 aa5.29□□□□□ -1.56
VRK3-204ENST00000593912 LAMC1P11047 1609 aa5.29□□□□□ -1.56
VRK3-204ENST00000593912 DCCP43146 1447 aa5.29□□□□□ -1.56
VRK3-204ENST00000593912 CASZ1Q86V15 1759 aa5.29□□□□□ -1.56
VRK3-204ENST00000593912 ADGRB2O60241 1585 aa5.29□□□□□ -1.56
VRK3-204ENST00000593912 ADGRB3O60242 1522 aa5.28□□□□□ -1.56
VRK3-204ENST00000593912 MBD5Q9P267 1494 aa5.28□□□□□ -1.56
VRK3-204ENST00000593912 PPP1R15AO75807 674 aaPredicted RBP5.28□□□□□ -1.56
VRK3-204ENST00000593912 FHDC1Q9C0D6 1143 aaPredicted RBP5.28□□□□□ -1.56
VRK3-204ENST00000593912 PDGFDQ9GZP0 370 aaPredicted RBP5.28□□□□□ -1.56
VRK3-204ENST00000593912 CFDP1Q9UEE9 299 aaPredicted RBP5.28□□□□□ -1.56
VRK3-204ENST00000593912 TRPM2O94759 1503 aa5.28□□□□□ -1.56
VRK3-204ENST00000593912 PLCH1Q4KWH8 1693 aa5.28□□□□□ -1.56
VRK3-204ENST00000593912 SOS2Q07890 1332 aaPredicted RBP5.27□□□□□ -1.57
VRK3-204ENST00000593912 IDI1Q13907 227 aa5.27□□□□□ -1.57
VRK3-204ENST00000593912 NALCNQ8IZF0 1738 aa5.27□□□□□ -1.57
VRK3-204ENST00000593912 DNAJC5GQ8N7S2 189 aa5.27□□□□□ -1.57
VRK3-204ENST00000593912 PTPRUQ92729 1446 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms