RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CDK19Q9BWU1 502 aa12.73□□□□□ -0.37
LIG3-216ENST00000593099 NBPF8Q3BBV2 869 aa12.73□□□□□ -0.37
LIG3-216ENST00000593099 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
LIG3-216ENST00000593099 TCOF1Q13428 1488 aaKnown RBP12.72□□□□□ -0.37
LIG3-216ENST00000593099 MS4A1P11836 297 aa12.72□□□□□ -0.37
LIG3-216ENST00000593099 ABTB2Q8N961 1025 aa12.72□□□□□ -0.37
LIG3-216ENST00000593099 ZNF692Q9BU19 519 aaPredicted RBP12.71□□□□□ -0.37
LIG3-216ENST00000593099 AMOTL2Q9Y2J4 779 aa12.71□□□□□ -0.37
LIG3-216ENST00000593099 MYBBP1AQ9BQG0 1328 aaKnown RBP12.71□□□□□ -0.37
LIG3-216ENST00000593099 CNTLNQ9NXG0 1405 aa12.71□□□□□ -0.38
LIG3-216ENST00000593099 NUTM2GQ5VZR2 741 aa12.71□□□□□ -0.38
LIG3-216ENST00000593099 CHMP4BQ9H444 224 aaKnown RBP12.7□□□□□ -0.38
LIG3-216ENST00000593099 FAM135AQ9P2D6 1515 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 PTPRKQ15262 1439 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 FRAT1Q92837 279 aaPredicted RBP12.7□□□□□ -0.38
LIG3-216ENST00000593099 SHANK2Q9UPX8 1470 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 GGNBP2Q9H3C7 697 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 ZMYM3Q14202 1370 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 KIF7Q2M1P5 1343 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 PIP4K2BP78356 416 aa12.7□□□□□ -0.38
LIG3-216ENST00000593099 CFAP43Q8NDM7 1665 aa12.69□□□□□ -0.38
LIG3-216ENST00000593099 CCDC7Q96M83 1385 aa12.69□□□□□ -0.38
LIG3-216ENST00000593099 ADGRF5Q8IZF2 1346 aa12.68□□□□□ -0.38
LIG3-216ENST00000593099 C1orf141Q5JVX7 400 aa12.68□□□□□ -0.38
LIG3-216ENST00000593099 CABP1Q9NZU7 370 aa12.68□□□□□ -0.38
LIG3-216ENST00000593099 DIAPH1O60610 1272 aaKnown RBP12.68□□□□□ -0.38
LIG3-216ENST00000593099 CCDC61Q9Y6R9 512 aa12.67□□□□□ -0.38
LIG3-216ENST00000593099 ERCC6L2Q5T890 1561 aa12.67□□□□□ -0.38
LIG3-216ENST00000593099 ATAD2Q6PL18 1390 aa12.67□□□□□ -0.38
LIG3-216ENST00000593099 WAPLQ7Z5K2 1190 aa12.67□□□□□ -0.38
LIG3-216ENST00000593099 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
LIG3-216ENST00000593099 SLC12A5Q9H2X9 1139 aa12.66□□□□□ -0.38
LIG3-216ENST00000593099 NOS1P29475 1434 aa12.66□□□□□ -0.38
LIG3-216ENST00000593099 PRKRIP1Q9H875 184 aaPredicted RBP12.66□□□□□ -0.38
LIG3-216ENST00000593099 NLRP2Q9NX02 1062 aa12.66□□□□□ -0.38
LIG3-216ENST00000593099 IRX6P78412 446 aaPredicted RBP12.65□□□□□ -0.38
LIG3-216ENST00000593099 RAPGEF4Q8WZA2 1011 aa12.65□□□□□ -0.38
LIG3-216ENST00000593099 ATP7AQ04656 1500 aa12.65□□□□□ -0.38
LIG3-216ENST00000593099 CCDC146Q8IYE0 955 aa12.65□□□□□ -0.38
LIG3-216ENST00000593099 HSPA2P54652 639 aa12.65□□□□□ -0.38
LIG3-216ENST00000593099 NUDT16Q96DE0 195 aaKnown RBP12.65□□□□□ -0.38
LIG3-216ENST00000593099 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.65□□□□□ -0.39
LIG3-216ENST00000593099 C14orf93Q9H972 538 aaKnown RBP12.64□□□□□ -0.39
LIG3-216ENST00000593099 MAPKBP1O60336 1514 aa12.64□□□□□ -0.39
LIG3-216ENST00000593099 UPF2Q9HAU5 1272 aaKnown RBP12.64□□□□□ -0.39
LIG3-216ENST00000593099 TEFQ10587 303 aa12.64□□□□□ -0.39
LIG3-216ENST00000593099 STK31Q9BXU1 1019 aa12.64□□□□□ -0.39
LIG3-216ENST00000593099 ZFYVE16Q7Z3T8 1539 aa12.63□□□□□ -0.39
LIG3-216ENST00000593099 NUTM2BA6NNL0 878 aaPredicted RBP12.62□□□□□ -0.39
LIG3-216ENST00000593099 NUTM2EB1AL46 878 aaPredicted RBP12.62□□□□□ -0.39
LIG3-216ENST00000593099 NUTM2AQ8IVF1 878 aaPredicted RBP12.62□□□□□ -0.39
LIG3-216ENST00000593099 IPO8O15397 1037 aaKnown RBP12.62□□□□□ -0.39
LIG3-216ENST00000593099 CADPS2Q86UW7 1296 aa12.62□□□□□ -0.39
LIG3-216ENST00000593099 PRKCSHP14314 528 aaPredicted RBP12.62□□□□□ -0.39
LIG3-216ENST00000593099 RIMS2Q9UQ26 1411 aa12.62□□□□□ -0.39
LIG3-216ENST00000593099 CFAP74Q9C0B2 1584 aa12.62□□□□□ -0.39
LIG3-216ENST00000593099 GOLGA2Q08379 1002 aa12.61□□□□□ -0.39
LIG3-216ENST00000593099 RBM33Q96EV2 1170 aaKnown RBP12.61□□□□□ -0.39
LIG3-216ENST00000593099 SUPT16HQ9Y5B9 1047 aaKnown RBP12.61□□□□□ -0.39
LIG3-216ENST00000593099 PRDM11Q9NQV5 511 aa12.6□□□□□ -0.39
LIG3-216ENST00000593099 PHF8Q9UPP1 1060 aa12.6□□□□□ -0.39
LIG3-216ENST00000593099 UHRF1BP1Q6BDS2 1440 aa12.6□□□□□ -0.39
LIG3-216ENST00000593099 XPCQ01831 940 aaPredicted RBP12.6□□□□□ -0.39
LIG3-216ENST00000593099 CLASP1Q7Z460 1538 aa12.6□□□□□ -0.39
LIG3-216ENST00000593099 RPRD2Q5VT52 1461 aaKnown RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 OS9Q13438 667 aaPredicted RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 PHF23Q9BUL5 403 aaPredicted RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 YEATS2Q9ULM3 1422 aa12.59□□□□□ -0.39
LIG3-216ENST00000593099 WASLO00401 505 aaPredicted RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 RRP7AQ9Y3A4 280 aaKnown RBP12.59□□□□□ -0.39
LIG3-216ENST00000593099 WASHC2AQ641Q2 1341 aa12.59□□□□□ -0.39
LIG3-216ENST00000593099 MAGI3Q5TCQ9 1506 aa12.58□□□□□ -0.4
LIG3-216ENST00000593099 STRN4Q9NRL3 753 aa12.58□□□□□ -0.4
LIG3-216ENST00000593099 MAGI2Q86UL8 1455 aa12.58□□□□□ -0.4
LIG3-216ENST00000593099 DNMT1P26358 1616 aaKnown RBP12.58□□□□□ -0.4
LIG3-216ENST00000593099 MTHFSP49914 203 aa12.58□□□□□ -0.4
LIG3-216ENST00000593099 TTC5Q8N0Z6 440 aa12.58□□□□□ -0.4
LIG3-216ENST00000593099 SYTL4Q96C24 671 aaPredicted RBP12.58□□□□□ -0.4
LIG3-216ENST00000593099 NCKAP5LQ9HCH0 1330 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 TOM1O60784 492 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 USP35Q9P2H5 1018 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 ADGRL2O95490 1459 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 FOXO3O43524 673 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 MSH6P52701 1360 aa12.57□□□□□ -0.4
LIG3-216ENST00000593099 PDE3BQ13370 1112 aa12.56□□□□□ -0.4
LIG3-216ENST00000593099 MYO5CQ9NQX4 1742 aa12.56□□□□□ -0.4
LIG3-216ENST00000593099 NGEFQ8N5V2 710 aa12.55□□□□□ -0.4
LIG3-216ENST00000593099 UBAP1LF5GYI3 381 aa12.55□□□□□ -0.4
LIG3-216ENST00000593099 LRPPRCP42704 1394 aaKnown RBP12.55□□□□□ -0.4
LIG3-216ENST00000593099 HMOX1P09601 288 aa12.55□□□□□ -0.4
LIG3-216ENST00000593099 KCNH5Q8NCM2 988 aa12.55□□□□□ -0.4
LIG3-216ENST00000593099 TBX22Q9Y458 520 aa12.55□□□□□ -0.4
LIG3-216ENST00000593099 SMG6Q86US8 1419 aaKnown RBP12.54□□□□□ -0.4
LIG3-216ENST00000593099 TOM1L2Q6ZVM7 507 aa12.54□□□□□ -0.4
LIG3-216ENST00000593099 HDAC5Q9UQL6 1122 aa12.54□□□□□ -0.4
LIG3-216ENST00000593099 APAF1O14727 1248 aa12.54□□□□□ -0.4
LIG3-216ENST00000593099 MLH3Q9UHC1 1453 aa12.53□□□□□ -0.4
LIG3-216ENST00000593099 SMC4Q9NTJ3 1288 aa12.53□□□□□ -0.4
LIG3-216ENST00000593099 MBD5Q9P267 1494 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms