RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 SLIT1O75093 1534 aa19.7■□□□□ 0.74
VMP1-210ENST00000589823 ARHGAP23Q9P227 1491 aa19.69■□□□□ 0.74
VMP1-210ENST00000589823 ANKLE2Q86XL3 938 aa19.69■□□□□ 0.74
VMP1-210ENST00000589823 PPP1R15AO75807 674 aaPredicted RBP19.68■□□□□ 0.74
VMP1-210ENST00000589823 TXNDC2Q86VQ3 553 aa19.68■□□□□ 0.74
VMP1-210ENST00000589823 TONSLQ96HA7 1378 aa19.68■□□□□ 0.74
VMP1-210ENST00000589823 ZFYVE9O95405 1425 aa19.67■□□□□ 0.74
VMP1-210ENST00000589823 NEXMIFQ5QGS0 1516 aa19.66■□□□□ 0.74
VMP1-210ENST00000589823 VGFO15240 615 aaPredicted RBP19.65■□□□□ 0.74
VMP1-210ENST00000589823 NUTM2DQ5VT03 806 aaPredicted RBP19.65■□□□□ 0.74
VMP1-210ENST00000589823 DCAF11Q8TEB1 546 aa19.65■□□□□ 0.74
VMP1-210ENST00000589823 SCAF11Q99590 1463 aaKnown RBP19.65■□□□□ 0.74
VMP1-210ENST00000589823 LTKP29376 864 aa19.64■□□□□ 0.73
VMP1-210ENST00000589823 NCKAP5LQ9HCH0 1330 aa19.63■□□□□ 0.73
VMP1-210ENST00000589823 L3MBTL2Q969R5 705 aa19.63■□□□□ 0.73
VMP1-210ENST00000589823 STAC3Q96MF2 364 aa19.63■□□□□ 0.73
VMP1-210ENST00000589823 PPLO60437 1756 aa19.62■□□□□ 0.73
VMP1-210ENST00000589823 KDM2AQ9Y2K7 1162 aa19.62■□□□□ 0.73
VMP1-210ENST00000589823 BCANQ96GW7 911 aa19.61■□□□□ 0.73
VMP1-210ENST00000589823 TIMELESSQ9UNS1 1208 aa19.61■□□□□ 0.73
VMP1-210ENST00000589823 POLR1AO95602 1720 aaPredicted RBP19.6■□□□□ 0.73
VMP1-210ENST00000589823 IFT172Q9UG01 1749 aa19.6■□□□□ 0.73
VMP1-210ENST00000589823 MYOM2P54296 1465 aa19.6■□□□□ 0.73
VMP1-210ENST00000589823 PLEKHG1Q9ULL1 1385 aa19.59■□□□□ 0.73
VMP1-210ENST00000589823 NPHP4O75161 1426 aaPredicted RBP19.58■□□□□ 0.72
VMP1-210ENST00000589823 ADGRF5Q8IZF2 1346 aa19.57■□□□□ 0.72
VMP1-210ENST00000589823 MED14O60244 1454 aa19.57■□□□□ 0.72
VMP1-210ENST00000589823 SENP3Q9H4L4 574 aaPredicted RBP19.56■□□□□ 0.72
VMP1-210ENST00000589823 DMRT2Q9Y5R5 561 aa19.56■□□□□ 0.72
VMP1-210ENST00000589823 STRCQ7RTU9 1775 aa19.55■□□□□ 0.72
VMP1-210ENST00000589823 IQGAP1P46940 1657 aa19.53■□□□□ 0.72
VMP1-210ENST00000589823 NRXN1Q9ULB1 1477 aa19.53■□□□□ 0.72
VMP1-210ENST00000589823 SETBP1Q9Y6X0 1596 aa19.52■□□□□ 0.71
VMP1-210ENST00000589823 PIK3C2GO75747 1445 aa19.51■□□□□ 0.71
VMP1-210ENST00000589823 SLC26A8Q96RN1 970 aa19.51■□□□□ 0.71
VMP1-210ENST00000589823 PRAG1Q86YV5 1406 aa19.51■□□□□ 0.71
VMP1-210ENST00000589823 DIP2AQ14689 1571 aa19.49■□□□□ 0.71
VMP1-210ENST00000589823 TBX22Q9Y458 520 aa19.48■□□□□ 0.71
VMP1-210ENST00000589823 ADAMTS13Q76LX8 1427 aa19.48■□□□□ 0.71
VMP1-210ENST00000589823 NRXN3Q9Y4C0 1643 aa19.47■□□□□ 0.71
VMP1-210ENST00000589823 ALKQ9UM73 1620 aa19.47■□□□□ 0.71
VMP1-210ENST00000589823 CFAP70Q5T0N1 1121 aa19.46■□□□□ 0.71
VMP1-210ENST00000589823 C14orf93Q9H972 538 aaKnown RBP19.46■□□□□ 0.71
VMP1-210ENST00000589823 LAMC1P11047 1609 aa19.46■□□□□ 0.71
VMP1-210ENST00000589823 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
VMP1-210ENST00000589823 ZEB1P37275 1124 aaPredicted RBP19.42■□□□□ 0.7
VMP1-210ENST00000589823 PIK3R4Q99570 1358 aa19.42■□□□□ 0.7
VMP1-210ENST00000589823 KIAA1210Q9ULL0 1709 aa19.42■□□□□ 0.7
VMP1-210ENST00000589823 METP08581 1390 aa19.41■□□□□ 0.7
VMP1-210ENST00000589823 TRPM1Q7Z4N2 1603 aa19.4■□□□□ 0.7
VMP1-210ENST00000589823 SETD1AO15047 1707 aaKnown RBP19.39■□□□□ 0.7
VMP1-210ENST00000589823 TMEM132EQ6IEE7 984 aa19.39■□□□□ 0.69
VMP1-210ENST00000589823 ROCK2O75116 1388 aaKnown RBP19.39■□□□□ 0.69
VMP1-210ENST00000589823 RALGAPBQ86X10 1494 aa19.38■□□□□ 0.69
VMP1-210ENST00000589823 KCNA6P17658 529 aa19.37■□□□□ 0.69
VMP1-210ENST00000589823 NBPF1Q3BBV0 1214 aa19.37■□□□□ 0.69
VMP1-210ENST00000589823 ASXL1Q8IXJ9 1541 aa19.36■□□□□ 0.69
VMP1-210ENST00000589823 AMOTL2Q9Y2J4 779 aa19.36■□□□□ 0.69
VMP1-210ENST00000589823 ADGRB1O14514 1584 aa19.36■□□□□ 0.69
VMP1-210ENST00000589823 PTPRUQ92729 1446 aa19.35■□□□□ 0.69
VMP1-210ENST00000589823 YTHDC2Q9H6S0 1430 aaKnown RBP19.35■□□□□ 0.69
VMP1-210ENST00000589823 LRPPRCP42704 1394 aaKnown RBP19.35■□□□□ 0.69
VMP1-210ENST00000589823 ZNF335Q9H4Z2 1342 aaPredicted RBP19.35■□□□□ 0.69
VMP1-210ENST00000589823 STK26Q9P289 416 aa19.35■□□□□ 0.69
VMP1-210ENST00000589823 CARD11Q9BXL7 1154 aa19.34■□□□□ 0.69
VMP1-210ENST00000589823 CHD2O14647 1828 aaKnown RBP19.33■□□□□ 0.69
VMP1-210ENST00000589823 GPRASP1Q5JY77 1395 aa19.32■□□□□ 0.68
VMP1-210ENST00000589823 ABCC11Q96J66 1382 aa19.32■□□□□ 0.68
VMP1-210ENST00000589823 NWD1Q149M9 1564 aa19.32■□□□□ 0.68
VMP1-210ENST00000589823 TRAK1Q9UPV9 953 aa19.31■□□□□ 0.68
VMP1-210ENST00000589823 XRN1Q8IZH2 1706 aaKnown RBP19.3■□□□□ 0.68
VMP1-210ENST00000589823 NKTRP30414 1462 aaKnown RBP19.29■□□□□ 0.68
VMP1-210ENST00000589823 TECPR2O15040 1411 aa19.29■□□□□ 0.68
VMP1-210ENST00000589823 PTCH1Q13635 1447 aa19.28■□□□□ 0.68
VMP1-210ENST00000589823 CPS1P31327 1500 aa19.28■□□□□ 0.68
VMP1-210ENST00000589823 KNDC1Q76NI1 1749 aa19.28■□□□□ 0.68
VMP1-210ENST00000589823 PROSER2Q86WR7 435 aaPredicted RBP19.27■□□□□ 0.68
VMP1-210ENST00000589823 STRCP1A6NGW2 1772 aa19.27■□□□□ 0.67
VMP1-210ENST00000589823 DLC1Q96QB1 1528 aa19.26■□□□□ 0.67
VMP1-210ENST00000589823 SIRT1Q96EB6 747 aa19.26■□□□□ 0.67
VMP1-210ENST00000589823 POGKQ9P215 609 aa19.26■□□□□ 0.67
VMP1-210ENST00000589823 EIF3AQ14152 1382 aaKnown RBP19.26■□□□□ 0.67
VMP1-210ENST00000589823 ROBO2Q9HCK4 1378 aa19.26■□□□□ 0.67
VMP1-210ENST00000589823 FAM135BQ49AJ0 1406 aa19.25■□□□□ 0.67
VMP1-210ENST00000589823 PRAM1Q96QH2 718 aa19.24■□□□□ 0.67
VMP1-210ENST00000589823 LTBP4Q8N2S1 1624 aa19.23■□□□□ 0.67
VMP1-210ENST00000589823 WAPLQ7Z5K2 1190 aa19.23■□□□□ 0.67
VMP1-210ENST00000589823 ARHGEF28Q8N1W1 1705 aaKnown RBP19.22■□□□□ 0.67
VMP1-210ENST00000589823 TMEM94Q12767 1356 aa19.21■□□□□ 0.67
VMP1-210ENST00000589823 USP47Q96K76 1375 aa19.21■□□□□ 0.67
VMP1-210ENST00000589823 LRRC7Q96NW7 1537 aa19.21■□□□□ 0.67
VMP1-210ENST00000589823 SAFB2Q14151 953 aaKnown RBP eCLIP19.21■□□□□ 0.67
VMP1-210ENST00000589823 C14orf37Q86TY3 774 aa19.21■□□□□ 0.67
VMP1-210ENST00000589823 CENPJQ9HC77 1338 aaPredicted RBP19.21■□□□□ 0.67
VMP1-210ENST00000589823 RBM33Q96EV2 1170 aaKnown RBP19.2■□□□□ 0.66
VMP1-210ENST00000589823 PLEKHH1Q9ULM0 1364 aa19.19■□□□□ 0.66
VMP1-210ENST00000589823 NCOA3Q9Y6Q9 1424 aa19.19■□□□□ 0.66
VMP1-210ENST00000589823 EIF4G2P78344 907 aaKnown RBP eCLIP19.19■□□□□ 0.66
VMP1-210ENST00000589823 ST20-MTHFSA0A0A6YYL1 179 aa19.16■□□□□ 0.66
VMP1-210ENST00000589823 MINK1Q8N4C8 1332 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms