RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 MYSM1Q5VVJ2 828 aa9.44□□□□□ -0.9
SMAD4-208ENST00000589706 WIZO95785 1651 aa9.44□□□□□ -0.9
SMAD4-208ENST00000589706 PRSS12P56730 875 aa9.43□□□□□ -0.9
SMAD4-208ENST00000589706 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.43□□□□□ -0.9
SMAD4-208ENST00000589706 ADAM33Q9BZ11 813 aa9.43□□□□□ -0.9
SMAD4-208ENST00000589706 NUDT7P0C024 238 aa9.42□□□□□ -0.9
SMAD4-208ENST00000589706 CLK2P49760 499 aaKnown RBP9.42□□□□□ -0.9
SMAD4-208ENST00000589706 DIXDC1Q155Q3 683 aa9.42□□□□□ -0.9
SMAD4-208ENST00000589706 RBM46Q8TBY0 533 aaKnown RBP9.42□□□□□ -0.9
SMAD4-208ENST00000589706 CDCA7LQ96GN5 454 aa9.41□□□□□ -0.9
SMAD4-208ENST00000589706 TBC1D2Q9BYX2 928 aa9.41□□□□□ -0.9
SMAD4-208ENST00000589706 DOK7Q18PE1 504 aa9.4□□□□□ -0.9
SMAD4-208ENST00000589706 ARSIQ5FYB1 569 aa9.4□□□□□ -0.9
SMAD4-208ENST00000589706 KHSRPQ92945 711 aaKnown RBP eCLIP9.4□□□□□ -0.91e-6■□□□□ 10.3
SMAD4-208ENST00000589706 PODXL2Q9NZ53 605 aa9.4□□□□□ -0.9
SMAD4-208ENST00000589706 CLASP1Q7Z460 1538 aa9.4□□□□□ -0.91
SMAD4-208ENST00000589706 TOPBP1Q92547 1522 aa9.4□□□□□ -0.91
SMAD4-208ENST00000589706 RAD21O60216 631 aa9.39□□□□□ -0.91
SMAD4-208ENST00000589706 PROSER2Q86WR7 435 aaPredicted RBP9.39□□□□□ -0.91
SMAD4-208ENST00000589706 CCDC82Q8N4S0 544 aa9.39□□□□□ -0.91
SMAD4-208ENST00000589706 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.38□□□□□ -0.91
SMAD4-208ENST00000589706 SPDYE5A6NIY4 337 aa9.38□□□□□ -0.91
SMAD4-208ENST00000589706 POM121Q96HA1 1249 aa9.38□□□□□ -0.91
SMAD4-208ENST00000589706 BANK1Q8NDB2 785 aa9.37□□□□□ -0.91
SMAD4-208ENST00000589706 ZSWIM6Q9HCJ5 1215 aa9.37□□□□□ -0.91
SMAD4-208ENST00000589706 GAPVD1Q14C86 1478 aa9.36□□□□□ -0.91
SMAD4-208ENST00000589706 RIMBP2O15034 1052 aa9.36□□□□□ -0.91
SMAD4-208ENST00000589706 HOXB3P14651 431 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-208ENST00000589706 RFC5P40937 340 aa9.36□□□□□ -0.91
SMAD4-208ENST00000589706 TRIM26Q12899 539 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-208ENST00000589706 GPR153Q6NV75 609 aa9.36□□□□□ -0.91
SMAD4-208ENST00000589706 FNBP4Q8N3X1 1017 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-208ENST00000589706 ZNF777Q9ULD5 760 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-208ENST00000589706 TARBP1Q13395 1621 aaKnown RBP9.35□□□□□ -0.91
SMAD4-208ENST00000589706 RCCD1A6NED2 376 aa9.35□□□□□ -0.91
SMAD4-208ENST00000589706 CHMP7Q8WUX9 453 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-208ENST00000589706 FAM198AQ9UFP1 575 aa9.35□□□□□ -0.91
SMAD4-208ENST00000589706 LIMD1Q9UGP4 676 aa9.35□□□□□ -0.91
SMAD4-208ENST00000589706 TMEM259Q4ZIN3 620 aa9.34□□□□□ -0.91
SMAD4-208ENST00000589706 PPP2R2DQ66LE6 453 aa9.34□□□□□ -0.91
SMAD4-208ENST00000589706 RIC3Q7Z5B4 369 aa9.34□□□□□ -0.91
SMAD4-208ENST00000589706 SPIRE2Q8WWL2 714 aa9.34□□□□□ -0.91
SMAD4-208ENST00000589706 EYA1Q99502 592 aa9.34□□□□□ -0.91
SMAD4-208ENST00000589706 PRDM2Q13029 1718 aa9.34□□□□□ -0.92
SMAD4-208ENST00000589706 SYNJ1O43426 1573 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 ABCC8Q09428 1581 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 CD46P15529 392 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 COL9A1P20849 921 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 FBXO31Q5XUX0 539 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-208ENST00000589706 SNRKQ9NRH2 765 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 LHX6Q9UPM6 363 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 COG6Q9Y2V7 657 aa9.33□□□□□ -0.92
SMAD4-208ENST00000589706 PPP4R3BQ5MIZ7 849 aa9.32□□□□□ -0.92
SMAD4-208ENST00000589706 BCL2L12Q9HB09 334 aa9.32□□□□□ -0.92
SMAD4-208ENST00000589706 TSKSQ9UJT2 592 aa9.32□□□□□ -0.92
SMAD4-208ENST00000589706 PSDA5PKW4 1024 aaPredicted RBP9.31□□□□□ -0.92
SMAD4-208ENST00000589706 TUSC1Q2TAM9 212 aa9.31□□□□□ -0.92
SMAD4-208ENST00000589706 SULF1Q8IWU6 871 aa9.31□□□□□ -0.92
SMAD4-208ENST00000589706 SNAPC4Q5SXM2 1469 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 TDRD9Q8NDG6 1382 aaKnown RBP9.3□□□□□ -0.92
SMAD4-208ENST00000589706 PPP1R3GB7ZBB8 358 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 SPTLC1O15269 473 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 HRCP23327 699 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 NUDT18Q6ZVK8 323 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 NUTM1Q86Y26 1132 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 ZNF710Q8N1W2 664 aa9.3□□□□□ -0.92
SMAD4-208ENST00000589706 DNMBPQ6XZF7 1577 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 KIF13AQ9H1H9 1805 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 DDX11L8A8MPP1 907 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 PTPREP23469 700 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 DNAJB2P25686 324 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 POTEHQ6S545 545 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 SERPINA10Q9UK55 444 aa9.29□□□□□ -0.92
SMAD4-208ENST00000589706 NBPF26B4DH59 902 aa9.28□□□□□ -0.92
SMAD4-208ENST00000589706 POTEJP0CG39 1038 aa9.28□□□□□ -0.92
SMAD4-208ENST00000589706 PDIA4P13667 645 aaKnown RBP9.28□□□□□ -0.92
SMAD4-208ENST00000589706 RSBN1LQ6PCB5 846 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-208ENST00000589706 SP7Q8TDD2 431 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-208ENST00000589706 TATDN2Q93075 761 aa9.28□□□□□ -0.92
SMAD4-208ENST00000589706 CCDC97Q96F63 343 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-208ENST00000589706 FBXO41Q8TF61 875 aa9.27□□□□□ -0.93
SMAD4-208ENST00000589706 PNMA3Q9UL41 463 aa9.27□□□□□ -0.93
SMAD4-208ENST00000589706 ZNF330Q9Y3S2 320 aaPredicted RBP9.27□□□□□ -0.93
SMAD4-208ENST00000589706 RAD54L2Q9Y4B4 1467 aa9.27□□□□□ -0.93
SMAD4-208ENST00000589706 MOXD2PA6NHM9 499 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 TRIM6-TRIM34B2RNG4 842 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 C3orf80F5H4A9 247 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 GJA5P36382 358 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 PACS2Q86VP3 889 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 TMEM134Q9H6X4 195 aa9.26□□□□□ -0.93
SMAD4-208ENST00000589706 POLA1P09884 1462 aaPredicted RBP9.26□□□□□ -0.93
SMAD4-208ENST00000589706 CSPP1Q1MSJ5 1256 aa9.25□□□□□ -0.93
SMAD4-208ENST00000589706 MTMR14Q8NCE2 650 aa9.25□□□□□ -0.93
SMAD4-208ENST00000589706 PLSCR2Q9NRY7 297 aa9.25□□□□□ -0.93
SMAD4-208ENST00000589706 TOP2AP11388 1531 aaKnown RBP9.25□□□□□ -0.93
SMAD4-208ENST00000589706 SOGA1O94964 1423 aa9.24□□□□□ -0.93
SMAD4-208ENST00000589706 MAGI1Q96QZ7 1491 aaPredicted RBP9.24□□□□□ -0.93
SMAD4-208ENST00000589706 LILRB3O75022 631 aa9.24□□□□□ -0.93
SMAD4-208ENST00000589706 NDUFV2P19404 249 aa9.24□□□□□ -0.93
SMAD4-208ENST00000589706 FAM69CQ0P6D2 419 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms