RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 SPATA31D1Q6ZQQ2 1576 aa13.9□□□□□ -0.18
VPS25-202ENST00000589219 DEPDC5O75140 1603 aa13.9□□□□□ -0.19
VPS25-202ENST00000589219 MROH1Q8NDA8 1641 aa13.9□□□□□ -0.19
VPS25-202ENST00000589219 CCDC144AA2RUR9 1427 aa13.89□□□□□ -0.19
VPS25-202ENST00000589219 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
VPS25-202ENST00000589219 NEURL4Q96JN8 1562 aa13.88□□□□□ -0.19
VPS25-202ENST00000589219 UBAP1LF5GYI3 381 aa13.88□□□□□ -0.19
VPS25-202ENST00000589219 ERVK-7P63135 1459 aa13.87□□□□□ -0.19
VPS25-202ENST00000589219 CPS1P31327 1500 aa13.87□□□□□ -0.19
VPS25-202ENST00000589219 PRDM15P57071 1507 aaPredicted RBP13.87□□□□□ -0.19
VPS25-202ENST00000589219 MED14O60244 1454 aa13.87□□□□□ -0.19
VPS25-202ENST00000589219 KANK1Q14678 1352 aa13.86□□□□□ -0.19
VPS25-202ENST00000589219 USP47Q96K76 1375 aa13.85□□□□□ -0.19
VPS25-202ENST00000589219 NPHP4O75161 1426 aaPredicted RBP13.85□□□□□ -0.19
VPS25-202ENST00000589219 ARHGAP31Q2M1Z3 1444 aa13.85□□□□□ -0.19
VPS25-202ENST00000589219 LAMC1P11047 1609 aa13.85□□□□□ -0.19
VPS25-202ENST00000589219 DISP3Q9P2K9 1392 aa13.84□□□□□ -0.19
VPS25-202ENST00000589219 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS25-202ENST00000589219 IQGAP1P46940 1657 aa13.84□□□□□ -0.19
VPS25-202ENST00000589219 UBR1Q8IWV7 1749 aa13.83□□□□□ -0.2
VPS25-202ENST00000589219 TET3O43151 1660 aa13.82□□□□□ -0.2
VPS25-202ENST00000589219 TRPM2O94759 1503 aa13.82□□□□□ -0.2
VPS25-202ENST00000589219 TOM1O60784 492 aa13.82□□□□□ -0.2
VPS25-202ENST00000589219 VWDEQ8N2E2 1590 aa13.82□□□□□ -0.2
VPS25-202ENST00000589219 TRPM1Q7Z4N2 1603 aa13.82□□□□□ -0.2
VPS25-202ENST00000589219 PRAG1Q86YV5 1406 aa13.81□□□□□ -0.2
VPS25-202ENST00000589219 ROCK2O75116 1388 aaKnown RBP13.81□□□□□ -0.2
VPS25-202ENST00000589219 KIF7Q2M1P5 1343 aa13.8□□□□□ -0.2
VPS25-202ENST00000589219 EID1Q9Y6B2 187 aa13.79□□□□□ -0.2
VPS25-202ENST00000589219 SCAF11Q99590 1463 aaKnown RBP13.79□□□□□ -0.2
VPS25-202ENST00000589219 LMTK2Q8IWU2 1503 aa13.79□□□□□ -0.2
VPS25-202ENST00000589219 E9PCH4 1651 aa13.79□□□□□ -0.2
VPS25-202ENST00000589219 STAG3Q9UJ98 1225 aa13.78□□□□□ -0.2
VPS25-202ENST00000589219 GPRASP1Q5JY77 1395 aa13.78□□□□□ -0.2
VPS25-202ENST00000589219 SLIT1O75093 1534 aa13.78□□□□□ -0.2
VPS25-202ENST00000589219 KDM5AP29375 1690 aaKnown RBP13.78□□□□□ -0.2
VPS25-202ENST00000589219 SPHKAPQ2M3C7 1700 aa13.78□□□□□ -0.2
VPS25-202ENST00000589219 TXNDC2Q86VQ3 553 aa13.77□□□□□ -0.21
VPS25-202ENST00000589219 PIK3C2BO00750 1634 aa13.76□□□□□ -0.21
VPS25-202ENST00000589219 ARHGAP23Q9P227 1491 aa13.76□□□□□ -0.21
VPS25-202ENST00000589219 ZNF326Q5BKZ1 582 aaKnown RBP13.76□□□□□ -0.21
VPS25-202ENST00000589219 SYNMO15061 1565 aa13.75□□□□□ -0.21
VPS25-202ENST00000589219 PIP4K2BP78356 416 aa13.75□□□□□ -0.21
VPS25-202ENST00000589219 CARD11Q9BXL7 1154 aa13.75□□□□□ -0.21
VPS25-202ENST00000589219 STRCP1A6NGW2 1772 aa13.74□□□□□ -0.21
VPS25-202ENST00000589219 EFCAB6Q5THR3 1501 aa13.74□□□□□ -0.21
VPS25-202ENST00000589219 TMEM2Q9UHN6 1383 aa13.73□□□□□ -0.21
VPS25-202ENST00000589219 C11orf95C9JLR9 678 aaPredicted RBP13.73□□□□□ -0.21
VPS25-202ENST00000589219 LTKP29376 864 aa13.73□□□□□ -0.21
VPS25-202ENST00000589219 DCAF11Q8TEB1 546 aa13.73□□□□□ -0.21
VPS25-202ENST00000589219 IDI1Q13907 227 aa13.72□□□□□ -0.21
VPS25-202ENST00000589219 SLC52A1Q9NWF4 448 aa13.72□□□□□ -0.21
VPS25-202ENST00000589219 LRRC7Q96NW7 1537 aa13.72□□□□□ -0.21
VPS25-202ENST00000589219 CLTCL1P53675 1640 aa13.72□□□□□ -0.21
VPS25-202ENST00000589219 ILDR2Q71H61 639 aa13.71□□□□□ -0.21
VPS25-202ENST00000589219 STAC3Q96MF2 364 aa13.71□□□□□ -0.21
VPS25-202ENST00000589219 NOS1P29475 1434 aa13.71□□□□□ -0.22
VPS25-202ENST00000589219 HSPA1LP34931 641 aa13.7□□□□□ -0.22
VPS25-202ENST00000589219 PRKRIP1Q9H875 184 aaPredicted RBP13.7□□□□□ -0.22
VPS25-202ENST00000589219 ADGRB3O60242 1522 aa13.69□□□□□ -0.22
VPS25-202ENST00000589219 SOCS7O14512 581 aa13.68□□□□□ -0.22
VPS25-202ENST00000589219 KDM2AQ9Y2K7 1162 aa13.68□□□□□ -0.22
VPS25-202ENST00000589219 HDGFP51858 240 aaKnown RBP13.67□□□□□ -0.22
VPS25-202ENST00000589219 KTN1Q86UP2 1357 aaKnown RBP13.67□□□□□ -0.22
VPS25-202ENST00000589219 MYOM2P54296 1465 aa13.67□□□□□ -0.22
VPS25-202ENST00000589219 ALKQ9UM73 1620 aa13.66□□□□□ -0.22
VPS25-202ENST00000589219 KIAA1210Q9ULL0 1709 aa13.66□□□□□ -0.22
VPS25-202ENST00000589219 XIRP1Q702N8 1843 aaKnown RBP13.64□□□□□ -0.23
VPS25-202ENST00000589219 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
VPS25-202ENST00000589219 PELP1Q8IZL8 1130 aaKnown RBP13.64□□□□□ -0.23
VPS25-202ENST00000589219 BCANQ96GW7 911 aa13.64□□□□□ -0.23
VPS25-202ENST00000589219 MYO5BQ9ULV0 1848 aa13.64□□□□□ -0.23
VPS25-202ENST00000589219 ST20-MTHFSA0A0A6YYL1 179 aa13.63□□□□□ -0.23
VPS25-202ENST00000589219 KCNA6P17658 529 aa13.63□□□□□ -0.23
VPS25-202ENST00000589219 RGL3Q3MIN7 710 aa13.63□□□□□ -0.23
VPS25-202ENST00000589219 MED1Q15648 1581 aaPredicted RBP13.62□□□□□ -0.23
VPS25-202ENST00000589219 SLC26A8Q96RN1 970 aa13.62□□□□□ -0.23
VPS25-202ENST00000589219 TMEM131LA2VDJ0 1609 aa13.61□□□□□ -0.23
VPS25-202ENST00000589219 PROSER2Q86WR7 435 aaPredicted RBP13.61□□□□□ -0.23
VPS25-202ENST00000589219 SUPT16HQ9Y5B9 1047 aaKnown RBP13.61□□□□□ -0.23
VPS25-202ENST00000589219 IFT172Q9UG01 1749 aa13.61□□□□□ -0.23
VPS25-202ENST00000589219 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS25-202ENST00000589219 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
VPS25-202ENST00000589219 NKTRP30414 1462 aaKnown RBP13.6□□□□□ -0.23
VPS25-202ENST00000589219 KIF1BO60333 1816 aa13.6□□□□□ -0.23
VPS25-202ENST00000589219 TMEM94Q12767 1356 aa13.59□□□□□ -0.23
VPS25-202ENST00000589219 PLEKHG1Q9ULL1 1385 aa13.59□□□□□ -0.23
VPS25-202ENST00000589219 ZFYVE9O95405 1425 aa13.59□□□□□ -0.23
VPS25-202ENST00000589219 RIMS2Q9UQ26 1411 aa13.59□□□□□ -0.23
VPS25-202ENST00000589219 CHGAP10645 457 aaKnown RBP13.59□□□□□ -0.23
VPS25-202ENST00000589219 HNRNPUQ00839 825 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS25-202ENST00000589219 EIF3AQ14152 1382 aaKnown RBP13.58□□□□□ -0.23
VPS25-202ENST00000589219 NWD1Q149M9 1564 aa13.58□□□□□ -0.23
VPS25-202ENST00000589219 CHD2O14647 1828 aaKnown RBP13.58□□□□□ -0.24
VPS25-202ENST00000589219 POLR3GLQ9BT43 218 aa13.58□□□□□ -0.24
VPS25-202ENST00000589219 FAM135BQ49AJ0 1406 aa13.57□□□□□ -0.24
VPS25-202ENST00000589219 NRXN1Q9ULB1 1477 aa13.57□□□□□ -0.24
VPS25-202ENST00000589219 NEFLP07196 543 aa13.57□□□□□ -0.24
VPS25-202ENST00000589219 RALBP1Q15311 655 aa13.56□□□□□ -0.24
VPS25-202ENST00000589219 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms