RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 MYOM2P54296 1465 aa16.16■□□□□ 0.18
VMP1-207ENST00000588131 MYO3AQ8NEV4 1616 aa16.16■□□□□ 0.18
VMP1-207ENST00000588131 UBR1Q8IWV7 1749 aa16.15■□□□□ 0.18
VMP1-207ENST00000588131 TRPM1Q7Z4N2 1603 aa16.15■□□□□ 0.18
VMP1-207ENST00000588131 PTPRMP28827 1452 aa16.14■□□□□ 0.17
VMP1-207ENST00000588131 RALGAPBQ86X10 1494 aa16.14■□□□□ 0.17
VMP1-207ENST00000588131 NLRP1Q9C000 1473 aa16.14■□□□□ 0.17
VMP1-207ENST00000588131 KDM5AP29375 1690 aaKnown RBP16.14■□□□□ 0.17
VMP1-207ENST00000588131 RPGRIP1LQ68CZ1 1315 aa16.13■□□□□ 0.17
VMP1-207ENST00000588131 NRXN1Q9ULB1 1477 aa16.12■□□□□ 0.17
VMP1-207ENST00000588131 STAG3Q9UJ98 1225 aa16.11■□□□□ 0.17
VMP1-207ENST00000588131 ADGRF5Q8IZF2 1346 aa16.11■□□□□ 0.17
VMP1-207ENST00000588131 STAC3Q96MF2 364 aa16.1■□□□□ 0.17
VMP1-207ENST00000588131 NUTM2DQ5VT03 806 aaPredicted RBP16.09■□□□□ 0.17
VMP1-207ENST00000588131 CEP170BQ9Y4F5 1589 aaPredicted RBP16.09■□□□□ 0.17
VMP1-207ENST00000588131 ZNF142P52746 1687 aaPredicted RBP16.08■□□□□ 0.16
VMP1-207ENST00000588131 KIAA1210Q9ULL0 1709 aa16.08■□□□□ 0.16
VMP1-207ENST00000588131 KDM4FA0A1W2PPD8 638 aa16.07■□□□□ 0.16
VMP1-207ENST00000588131 PIK3C2GO75747 1445 aa16.07■□□□□ 0.16
VMP1-207ENST00000588131 ZFYVE9O95405 1425 aa16.07■□□□□ 0.16
VMP1-207ENST00000588131 RIMS2Q9UQ26 1411 aa16.07■□□□□ 0.16
VMP1-207ENST00000588131 NBPF1Q3BBV0 1214 aa16.06■□□□□ 0.16
VMP1-207ENST00000588131 LAMC1P11047 1609 aa16.05■□□□□ 0.16
VMP1-207ENST00000588131 ROCK2O75116 1388 aaKnown RBP16.05■□□□□ 0.16
VMP1-207ENST00000588131 GPRASP1Q5JY77 1395 aa16.04■□□□□ 0.16
VMP1-207ENST00000588131 VGFO15240 615 aaPredicted RBP16.04■□□□□ 0.16
VMP1-207ENST00000588131 TMEM2Q9UHN6 1383 aa16.03■□□□□ 0.16
VMP1-207ENST00000588131 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
VMP1-207ENST00000588131 CFAP70Q5T0N1 1121 aa16.03■□□□□ 0.16
VMP1-207ENST00000588131 ARHGAP23Q9P227 1491 aa16.03■□□□□ 0.16
VMP1-207ENST00000588131 HIRIP3Q9BW71 556 aaPredicted RBP16.02■□□□□ 0.16
VMP1-207ENST00000588131 CARD11Q9BXL7 1154 aa16.02■□□□□ 0.16
VMP1-207ENST00000588131 SLIT1O75093 1534 aa16.02■□□□□ 0.15
VMP1-207ENST00000588131 HSPA5P11021 654 aaKnown RBP16.01■□□□□ 0.15
VMP1-207ENST00000588131 USP47Q96K76 1375 aa16■□□□□ 0.15
VMP1-207ENST00000588131 SETD1BQ9UPS6 1966 aaKnown RBP16■□□□□ 0.15
VMP1-207ENST00000588131 IQGAP1P46940 1657 aa16■□□□□ 0.15
VMP1-207ENST00000588131 EIF4G2P78344 907 aaKnown RBP eCLIP16■□□□□ 0.15
VMP1-207ENST00000588131 NRXN3Q9Y4C0 1643 aa16■□□□□ 0.15
VMP1-207ENST00000588131 SETBP1Q9Y6X0 1596 aa16■□□□□ 0.15
VMP1-207ENST00000588131 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.99■□□□□ 0.15
VMP1-207ENST00000588131 C14orf93Q9H972 538 aaKnown RBP15.99■□□□□ 0.15
VMP1-207ENST00000588131 ADGRB1O14514 1584 aa15.99■□□□□ 0.15
VMP1-207ENST00000588131 ASXL1Q8IXJ9 1541 aa15.99■□□□□ 0.15
VMP1-207ENST00000588131 SETD1AO15047 1707 aaKnown RBP15.98■□□□□ 0.15
VMP1-207ENST00000588131 THEMISQ8N1K5 641 aaPredicted RBP15.98■□□□□ 0.15
VMP1-207ENST00000588131 ALKQ9UM73 1620 aa15.97■□□□□ 0.15
VMP1-207ENST00000588131 LTKP29376 864 aa15.97■□□□□ 0.15
VMP1-207ENST00000588131 SCAF11Q99590 1463 aaKnown RBP15.96■□□□□ 0.14
VMP1-207ENST00000588131 HDGFP51858 240 aaKnown RBP15.95■□□□□ 0.14
VMP1-207ENST00000588131 TXNDC2Q86VQ3 553 aa15.95■□□□□ 0.14
VMP1-207ENST00000588131 TMEM132EQ6IEE7 984 aa15.94■□□□□ 0.14
VMP1-207ENST00000588131 PLEKHG1Q9ULL1 1385 aa15.94■□□□□ 0.14
VMP1-207ENST00000588131 EID1Q9Y6B2 187 aa15.92■□□□□ 0.14
VMP1-207ENST00000588131 ADAMTS13Q76LX8 1427 aa15.92■□□□□ 0.14
VMP1-207ENST00000588131 ST20-MTHFSA0A0A6YYL1 179 aa15.91■□□□□ 0.14
VMP1-207ENST00000588131 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
VMP1-207ENST00000588131 ARHGEF28Q8N1W1 1705 aaKnown RBP15.89■□□□□ 0.13
VMP1-207ENST00000588131 MED14O60244 1454 aa15.89■□□□□ 0.13
VMP1-207ENST00000588131 BCANQ96GW7 911 aa15.88■□□□□ 0.13
VMP1-207ENST00000588131 LMTK3Q96Q04 1460 aa15.88■□□□□ 0.13
VMP1-207ENST00000588131 METP08581 1390 aa15.87■□□□□ 0.13
VMP1-207ENST00000588131 YTHDC2Q9H6S0 1430 aaKnown RBP15.87■□□□□ 0.13
VMP1-207ENST00000588131 C11orf95C9JLR9 678 aaPredicted RBP15.87■□□□□ 0.13
VMP1-207ENST00000588131 ANKLE2Q86XL3 938 aa15.87■□□□□ 0.13
VMP1-207ENST00000588131 TRAK1Q9UPV9 953 aa15.87■□□□□ 0.13
VMP1-207ENST00000588131 EIF3AQ14152 1382 aaKnown RBP15.87■□□□□ 0.13
VMP1-207ENST00000588131 DIP2AQ14689 1571 aa15.86■□□□□ 0.13
VMP1-207ENST00000588131 SLC26A8Q96RN1 970 aa15.85■□□□□ 0.13
VMP1-207ENST00000588131 TESK2Q96S53 571 aa15.85■□□□□ 0.13
VMP1-207ENST00000588131 STK26Q9P289 416 aa15.85■□□□□ 0.13
VMP1-207ENST00000588131 WASHC2AQ641Q2 1341 aa15.85■□□□□ 0.13
VMP1-207ENST00000588131 QRICH2Q9H0J4 1663 aa15.85■□□□□ 0.13
VMP1-207ENST00000588131 LRPPRCP42704 1394 aaKnown RBP15.85■□□□□ 0.13
VMP1-207ENST00000588131 KNDC1Q76NI1 1749 aa15.84■□□□□ 0.13
VMP1-207ENST00000588131 HSPA2P54652 639 aa15.83■□□□□ 0.12
VMP1-207ENST00000588131 NCKAP5LQ9HCH0 1330 aa15.83■□□□□ 0.12
VMP1-207ENST00000588131 CCDC7Q96M83 1385 aa15.83■□□□□ 0.12
VMP1-207ENST00000588131 NPHP4O75161 1426 aaPredicted RBP15.83■□□□□ 0.12
VMP1-207ENST00000588131 DLC1Q96QB1 1528 aa15.83■□□□□ 0.12
VMP1-207ENST00000588131 TBX22Q9Y458 520 aa15.82■□□□□ 0.12
VMP1-207ENST00000588131 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
VMP1-207ENST00000588131 PTPRUQ92729 1446 aa15.82■□□□□ 0.12
VMP1-207ENST00000588131 CENPJQ9HC77 1338 aaPredicted RBP15.81■□□□□ 0.12
VMP1-207ENST00000588131 DISP3Q9P2K9 1392 aa15.81■□□□□ 0.12
VMP1-207ENST00000588131 CPS1P31327 1500 aa15.8■□□□□ 0.12
VMP1-207ENST00000588131 TECPR2O15040 1411 aa15.8■□□□□ 0.12
VMP1-207ENST00000588131 ABCC11Q96J66 1382 aa15.8■□□□□ 0.12
VMP1-207ENST00000588131 XRN1Q8IZH2 1706 aaKnown RBP15.79■□□□□ 0.12
VMP1-207ENST00000588131 SBNO2Q9Y2G9 1366 aa15.78■□□□□ 0.12
VMP1-207ENST00000588131 PRAM1Q96QH2 718 aa15.78■□□□□ 0.12
VMP1-207ENST00000588131 PLEKHH1Q9ULM0 1364 aa15.77■□□□□ 0.12
VMP1-207ENST00000588131 TMF1P82094 1093 aa15.77■□□□□ 0.12
VMP1-207ENST00000588131 DDX10Q13206 875 aaKnown RBP15.77■□□□□ 0.12
VMP1-207ENST00000588131 STRCQ7RTU9 1775 aa15.77■□□□□ 0.11
VMP1-207ENST00000588131 SAFB2Q14151 953 aaKnown RBP eCLIP15.76■□□□□ 0.11
VMP1-207ENST00000588131 DIEXFQ68CQ4 756 aaKnown RBP15.76■□□□□ 0.11
VMP1-207ENST00000588131 POLR3GLQ9BT43 218 aa15.76■□□□□ 0.11
VMP1-207ENST00000588131 PIK3R4Q99570 1358 aa15.75■□□□□ 0.11
VMP1-207ENST00000588131 ROBO2Q9HCK4 1378 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms