RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 MSH6P52701 1360 aa28.65■■■□□ 2.18
TOP3A-220ENST00000585031 KANK1Q14678 1352 aa28.65■■■□□ 2.18
TOP3A-220ENST00000585031 DAPK1P53355 1430 aa28.65■■■□□ 2.18
TOP3A-220ENST00000585031 LRP6O75581 1613 aa28.64■■■□□ 2.18
TOP3A-220ENST00000585031 LOC105371045A0A1W2PR82 267 aa28.63■■■□□ 2.17
TOP3A-220ENST00000585031 CHIC2Q9UKJ5 165 aa28.62■■■□□ 2.17
TOP3A-220ENST00000585031 ZNF772Q68DY9 489 aaPredicted RBP28.61■■■□□ 2.17
TOP3A-220ENST00000585031 SPATA31A6Q5VVP1 1343 aa28.6■■■□□ 2.17
TOP3A-220ENST00000585031 ZFYVE9O95405 1425 aa28.6■■■□□ 2.17
TOP3A-220ENST00000585031 BCANQ96GW7 911 aa28.58■■■□□ 2.17
TOP3A-220ENST00000585031 SRCAPQ6ZRS2 3230 aa28.57■■■□□ 2.16
TOP3A-220ENST00000585031 TRIM52Q96A61 297 aa28.56■■■□□ 2.16
TOP3A-220ENST00000585031 FGD6Q6ZV73 1430 aa28.55■■■□□ 2.16
TOP3A-220ENST00000585031 SLC52A1Q9NWF4 448 aa28.54■■■□□ 2.16
TOP3A-220ENST00000585031 PLEKHG1Q9ULL1 1385 aa28.53■■■□□ 2.16
TOP3A-220ENST00000585031 GCC2Q8IWJ2 1684 aa28.53■■■□□ 2.16
TOP3A-220ENST00000585031 ANKRD30AQ9BXX3 1397 aa28.51■■■□□ 2.16
TOP3A-220ENST00000585031 MEX3CQ5U5Q3 659 aaKnown RBP28.51■■■□□ 2.15
TOP3A-220ENST00000585031 RIMS2Q9UQ26 1411 aa28.51■■■□□ 2.15
TOP3A-220ENST00000585031 TMEM131LA2VDJ0 1609 aa28.51■■■□□ 2.15
TOP3A-220ENST00000585031 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.5■■■□□ 2.15
TOP3A-220ENST00000585031 RXRBP28702 533 aa28.5■■■□□ 2.15
TOP3A-220ENST00000585031 NCOA3Q9Y6Q9 1424 aa28.5■■■□□ 2.15
TOP3A-220ENST00000585031 SHPRHQ149N8 1683 aa28.48■■■□□ 2.15
TOP3A-220ENST00000585031 AHDC1Q5TGY3 1603 aaPredicted RBP28.47■■■□□ 2.15
TOP3A-220ENST00000585031 TBX22Q9Y458 520 aa28.46■■■□□ 2.15
TOP3A-220ENST00000585031 ADAMTS13Q76LX8 1427 aa28.44■■■□□ 2.14
TOP3A-220ENST00000585031 NUTM2DQ5VT03 806 aaPredicted RBP28.43■■■□□ 2.14
TOP3A-220ENST00000585031 DIP2AQ14689 1571 aa28.42■■■□□ 2.14
TOP3A-220ENST00000585031 RPRD2Q5VT52 1461 aaKnown RBP28.42■■■□□ 2.14
TOP3A-220ENST00000585031 CDK12Q9NYV4 1490 aaPredicted RBP28.42■■■□□ 2.14
TOP3A-220ENST00000585031 PPP1R15AO75807 674 aaPredicted RBP28.42■■■□□ 2.14
TOP3A-220ENST00000585031 C19orf44Q9H6X5 657 aa28.42■■■□□ 2.14
TOP3A-220ENST00000585031 ADGRL2O95490 1459 aa28.41■■■□□ 2.14
TOP3A-220ENST00000585031 CADPS2Q86UW7 1296 aa28.41■■■□□ 2.14
TOP3A-220ENST00000585031 HDGFP51858 240 aaKnown RBP28.4■■■□□ 2.14
TOP3A-220ENST00000585031 C14orf37Q86TY3 774 aa28.39■■■□□ 2.14
TOP3A-220ENST00000585031 ATF3P18847 181 aa28.36■■■□□ 2.13
TOP3A-220ENST00000585031 BRINP3Q76B58 766 aa28.36■■■□□ 2.13
TOP3A-220ENST00000585031 PTPRUQ92729 1446 aa28.35■■■□□ 2.13
TOP3A-220ENST00000585031 NUTM2BA6NNL0 878 aaPredicted RBP28.34■■■□□ 2.13
TOP3A-220ENST00000585031 NUTM2EB1AL46 878 aaPredicted RBP28.34■■■□□ 2.13
TOP3A-220ENST00000585031 NUTM2AQ8IVF1 878 aaPredicted RBP28.34■■■□□ 2.13
TOP3A-220ENST00000585031 ANKRD50Q9ULJ7 1429 aa28.34■■■□□ 2.13
TOP3A-220ENST00000585031 CHGAP10645 457 aaKnown RBP28.33■■■□□ 2.13
TOP3A-220ENST00000585031 E9PCH4 1651 aa28.32■■■□□ 2.12
TOP3A-220ENST00000585031 AFF2P51816 1311 aa28.32■■■□□ 2.12
TOP3A-220ENST00000585031 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.3■■■□□ 2.12
TOP3A-220ENST00000585031 PIK3R4Q99570 1358 aa28.29■■■□□ 2.12
TOP3A-220ENST00000585031 AMOTL2Q9Y2J4 779 aa28.29■■■□□ 2.12
TOP3A-220ENST00000585031 UNC13BO14795 1591 aa28.26■■■□□ 2.11
TOP3A-220ENST00000585031 ASXL1Q8IXJ9 1541 aa28.25■■■□□ 2.11
TOP3A-220ENST00000585031 RBM6P78332 1123 aaKnown RBP28.25■■■□□ 2.11
TOP3A-220ENST00000585031 APLP2Q06481 763 aa28.25■■■□□ 2.11
TOP3A-220ENST00000585031 QTRT2Q9H974 415 aaKnown RBP28.25■■■□□ 2.11
TOP3A-220ENST00000585031 SETD5Q9C0A6 1442 aa28.25■■■□□ 2.11
TOP3A-220ENST00000585031 NHSL1Q5SYE7 1610 aa28.25■■■□□ 2.11
TOP3A-220ENST00000585031 TRPM2O94759 1503 aa28.24■■■□□ 2.11
TOP3A-220ENST00000585031 NRXN3Q9Y4C0 1643 aa28.23■■■□□ 2.11
TOP3A-220ENST00000585031 FAM50AQ14320 339 aaKnown RBP28.23■■■□□ 2.11
TOP3A-220ENST00000585031 RGS12O14924 1447 aa28.22■■■□□ 2.11
TOP3A-220ENST00000585031 DDX17Q92841 729 aaKnown RBP28.22■■■□□ 2.11
TOP3A-220ENST00000585031 XRN1Q8IZH2 1706 aaKnown RBP28.21■■■□□ 2.11
TOP3A-220ENST00000585031 MST1RQ04912 1400 aa28.21■■■□□ 2.11
TOP3A-220ENST00000585031 LRRC59Q96AG4 307 aaKnown RBP28.21■■■□□ 2.11
TOP3A-220ENST00000585031 DCCP43146 1447 aa28.18■■■□□ 2.1
TOP3A-220ENST00000585031 C8orf37Q96NL8 207 aa28.17■■■□□ 2.1
TOP3A-220ENST00000585031 IQGAP3Q86VI3 1631 aa28.16■■■□□ 2.1
TOP3A-220ENST00000585031 PNPLA6Q8IY17 1366 aa28.14■■■□□ 2.1
TOP3A-220ENST00000585031 METP08581 1390 aa28.12■■■□□ 2.09
TOP3A-220ENST00000585031 SETBP1Q9Y6X0 1596 aa28.11■■■□□ 2.09
TOP3A-220ENST00000585031 NGLY1Q96IV0 654 aa28.1■■■□□ 2.09
TOP3A-220ENST00000585031 NALCNQ8IZF0 1738 aa28.09■■■□□ 2.09
TOP3A-220ENST00000585031 EP400Q96L91 3159 aa28.07■■■□□ 2.08
TOP3A-220ENST00000585031 ATAD2Q6PL18 1390 aa28.06■■■□□ 2.08
TOP3A-220ENST00000585031 ZRANB1Q9UGI0 708 aa28.05■■■□□ 2.08
TOP3A-220ENST00000585031 ADGRL3Q9HAR2 1447 aa28.04■■■□□ 2.08
TOP3A-220ENST00000585031 ADAMTS2O95450 1211 aa28.04■■■□□ 2.08
TOP3A-220ENST00000585031 NUP155O75694 1391 aa28.03■■■□□ 2.08
TOP3A-220ENST00000585031 FOXD1Q16676 465 aa28.02■■■□□ 2.08
TOP3A-220ENST00000585031 SPHKAPQ2M3C7 1700 aa28■■■□□ 2.07
TOP3A-220ENST00000585031 LAMC1P11047 1609 aa28■■■□□ 2.07
TOP3A-220ENST00000585031 C1orf167Q5SNV9 1468 aa27.99■■■□□ 2.07
TOP3A-220ENST00000585031 ROCK1Q13464 1354 aa27.99■■■□□ 2.07
TOP3A-220ENST00000585031 FNBP4Q8N3X1 1017 aaPredicted RBP27.98■■■□□ 2.07
TOP3A-220ENST00000585031 USP21Q9UK80 565 aa27.98■■■□□ 2.07
TOP3A-220ENST00000585031 TRPC5Q9UL62 973 aaPredicted RBP27.98■■■□□ 2.07
TOP3A-220ENST00000585031 ZNF326Q5BKZ1 582 aaKnown RBP27.96■■■□□ 2.07
TOP3A-220ENST00000585031 CCDC125Q86Z20 511 aa27.95■■■□□ 2.06
TOP3A-220ENST00000585031 ORAI2Q96SN7 254 aa27.95■■■□□ 2.06
TOP3A-220ENST00000585031 NEXMIFQ5QGS0 1516 aa27.95■■■□□ 2.06
TOP3A-220ENST00000585031 SOS2Q07890 1332 aaPredicted RBP27.93■■■□□ 2.06
TOP3A-220ENST00000585031 CLTCL1P53675 1640 aa27.91■■■□□ 2.06
TOP3A-220ENST00000585031 ATRNO75882 1429 aa27.89■■■□□ 2.06
TOP3A-220ENST00000585031 ROBO2Q9HCK4 1378 aa27.87■■■□□ 2.05
TOP3A-220ENST00000585031 PTCH1Q13635 1447 aa27.87■■■□□ 2.05
TOP3A-220ENST00000585031 COL22A1Q8NFW1 1626 aaPredicted RBP27.86■■■□□ 2.05
TOP3A-220ENST00000585031 ITGAEP38570 1179 aa27.85■■■□□ 2.05
TOP3A-220ENST00000585031 BCL9LQ86UU0 1499 aa27.82■■■□□ 2.04
TOP3A-220ENST00000585031 KIF1BO60333 1816 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms