RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	TMEM94	Q12767	1356 aa		13.76	□□□□□ -0.21
NUP85-223	ENST00000583877	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.76	□□□□□ -0.21	2e-12	■■■■□ 21.3
NUP85-223	ENST00000583877	FOXD4L1	Q9NU39	408 aa		13.76	□□□□□ -0.21
NUP85-223	ENST00000583877	NKTR	P30414	1462 aa	Known RBP	13.75	□□□□□ -0.21
NUP85-223	ENST00000583877	KCNA6	P17658	529 aa		13.75	□□□□□ -0.21
NUP85-223	ENST00000583877	HOXD11	P31277	338 aa	Predicted RBP	13.75	□□□□□ -0.21
NUP85-223	ENST00000583877	IDI1	Q13907	227 aa		13.75	□□□□□ -0.21
NUP85-223	ENST00000583877	GCC2	Q8IWJ2	1684 aa		13.74	□□□□□ -0.21
NUP85-223	ENST00000583877	NOS1	P29475	1434 aa		13.73	□□□□□ -0.21
NUP85-223	ENST00000583877	FGD6	Q6ZV73	1430 aa		13.73	□□□□□ -0.21
NUP85-223	ENST00000583877	ANKRD30A	Q9BXX3	1397 aa		13.72	□□□□□ -0.21
NUP85-223	ENST00000583877	LOC105371045	A0A1W2PR82	267 aa		13.72	□□□□□ -0.21
NUP85-223	ENST00000583877	PROSER2	Q86WR7	435 aa	Predicted RBP	13.72	□□□□□ -0.21
NUP85-223	ENST00000583877	SETD1A	O15047	1707 aa	Known RBP	13.72	□□□□□ -0.21
NUP85-223	ENST00000583877	POTEA	Q6S8J7	498 aa		13.71	□□□□□ -0.21
NUP85-223	ENST00000583877	SLC26A8	Q96RN1	970 aa		13.71	□□□□□ -0.21
NUP85-223	ENST00000583877	SLC52A1	Q9NWF4	448 aa		13.7	□□□□□ -0.22
NUP85-223	ENST00000583877	MSH6	P52701	1360 aa		13.7	□□□□□ -0.22
NUP85-223	ENST00000583877	RPRD2	Q5VT52	1461 aa	Known RBP	13.69	□□□□□ -0.22
NUP85-223	ENST00000583877	TMEM131L	A2VDJ0	1609 aa		13.69	□□□□□ -0.22
NUP85-223	ENST00000583877	COL16A1	Q07092	1604 aa	Predicted RBP	13.68	□□□□□ -0.22
NUP85-223	ENST00000583877	ADGRL2	O95490	1459 aa		13.68	□□□□□ -0.22
NUP85-223	ENST00000583877	RBM33	Q96EV2	1170 aa	Known RBP	13.68	□□□□□ -0.22
NUP85-223	ENST00000583877	CHIC2	Q9UKJ5	165 aa		13.68	□□□□□ -0.22
NUP85-223	ENST00000583877	ZFYVE9	O95405	1425 aa		13.67	□□□□□ -0.22
NUP85-223	ENST00000583877	APLP2	Q06481	763 aa		13.67	□□□□□ -0.22
NUP85-223	ENST00000583877	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.67	□□□□□ -0.22
NUP85-223	ENST00000583877	SLAIN2	Q9P270	581 aa		13.66	□□□□□ -0.22
NUP85-223	ENST00000583877	PLEKHG1	Q9ULL1	1385 aa		13.66	□□□□□ -0.22
NUP85-223	ENST00000583877	BCAN	Q96GW7	911 aa		13.65	□□□□□ -0.22
NUP85-223	ENST00000583877	JCAD	Q9P266	1359 aa		13.65	□□□□□ -0.22
NUP85-223	ENST00000583877	SHPRH	Q149N8	1683 aa		13.65	□□□□□ -0.22
NUP85-223	ENST00000583877		E9PCH4	1651 aa		13.64	□□□□□ -0.23
NUP85-223	ENST00000583877	RIMS2	Q9UQ26	1411 aa		13.64	□□□□□ -0.23
NUP85-223	ENST00000583877	NCOA3	Q9Y6Q9	1424 aa		13.64	□□□□□ -0.23
NUP85-223	ENST00000583877	UNC13B	O14795	1591 aa		13.63	□□□□□ -0.23
NUP85-223	ENST00000583877	DIP2A	Q14689	1571 aa		13.63	□□□□□ -0.23
NUP85-223	ENST00000583877	HDGF	P51858	240 aa	Known RBP	13.63	□□□□□ -0.23
NUP85-223	ENST00000583877	ANKRD50	Q9ULJ7	1429 aa		13.62	□□□□□ -0.23
NUP85-223	ENST00000583877	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.61	□□□□□ -0.23
NUP85-223	ENST00000583877	PPP1R15A	O75807	674 aa	Predicted RBP	13.61	□□□□□ -0.23
NUP85-223	ENST00000583877	TBX22	Q9Y458	520 aa		13.6	□□□□□ -0.23
NUP85-223	ENST00000583877	LRP6	O75581	1613 aa		13.59	□□□□□ -0.23
NUP85-223	ENST00000583877	IQGAP3	Q86VI3	1631 aa		13.59	□□□□□ -0.23
NUP85-223	ENST00000583877	SPATA31A6	Q5VVP1	1343 aa		13.59	□□□□□ -0.23
NUP85-223	ENST00000583877	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
NUP85-223	ENST00000583877	PIK3R4	Q99570	1358 aa		13.58	□□□□□ -0.24
NUP85-223	ENST00000583877	ADAMTS13	Q76LX8	1427 aa		13.57	□□□□□ -0.24
NUP85-223	ENST00000583877	TRPM2	O94759	1503 aa		13.57	□□□□□ -0.24
NUP85-223	ENST00000583877	FAM50A	Q14320	339 aa	Known RBP	13.56	□□□□□ -0.24
NUP85-223	ENST00000583877	CADPS2	Q86UW7	1296 aa		13.56	□□□□□ -0.24
NUP85-223	ENST00000583877	NHSL1	Q5SYE7	1610 aa		13.55	□□□□□ -0.24
NUP85-223	ENST00000583877	ZNF772	Q68DY9	489 aa	Predicted RBP	13.55	□□□□□ -0.24
NUP85-223	ENST00000583877	C14orf37	Q86TY3	774 aa		13.55	□□□□□ -0.24
NUP85-223	ENST00000583877	C19orf44	Q9H6X5	657 aa		13.55	□□□□□ -0.24
NUP85-223	ENST00000583877	SPHKAP	Q2M3C7	1700 aa		13.55	□□□□□ -0.24
NUP85-223	ENST00000583877	XRN1	Q8IZH2	1706 aa	Known RBP	13.54	□□□□□ -0.24
NUP85-223	ENST00000583877	ATF3	P18847	181 aa		13.54	□□□□□ -0.24
NUP85-223	ENST00000583877	MEX3C	Q5U5Q3	659 aa	Known RBP	13.54	□□□□□ -0.24
NUP85-223	ENST00000583877	NRXN3	Q9Y4C0	1643 aa		13.53	□□□□□ -0.24
NUP85-223	ENST00000583877	CHGA	P10645	457 aa	Known RBP	13.53	□□□□□ -0.24
NUP85-223	ENST00000583877	DCC	P43146	1447 aa		13.52	□□□□□ -0.25
NUP85-223	ENST00000583877	SLC4A2	P04920	1241 aa		13.51	□□□□□ -0.25
NUP85-223	ENST00000583877	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.51	□□□□□ -0.25
NUP85-223	ENST00000583877	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
NUP85-223	ENST00000583877	SETBP1	Q9Y6X0	1596 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	ASXL1	Q8IXJ9	1541 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	PTPRU	Q92729	1446 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	SRCAP	Q6ZRS2	3230 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	ROCK1	Q13464	1354 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	AMOTL2	Q9Y2J4	779 aa		13.5	□□□□□ -0.25
NUP85-223	ENST00000583877	KIF1B	O60333	1816 aa		13.49	□□□□□ -0.25
NUP85-223	ENST00000583877	BRINP3	Q76B58	766 aa		13.49	□□□□□ -0.25
NUP85-223	ENST00000583877	TRIM52	Q96A61	297 aa		13.49	□□□□□ -0.25
NUP85-223	ENST00000583877	NALCN	Q8IZF0	1738 aa		13.48	□□□□□ -0.25
NUP85-223	ENST00000583877	RXRB	P28702	533 aa		13.48	□□□□□ -0.25
NUP85-223	ENST00000583877	SETD5	Q9C0A6	1442 aa		13.47	□□□□□ -0.25
NUP85-223	ENST00000583877	MST1R	Q04912	1400 aa		13.47	□□□□□ -0.25
NUP85-223	ENST00000583877	NUP155	O75694	1391 aa		13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	EP400	Q96L91	3159 aa		13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	NUTM2E	B1AL46	878 aa	Predicted RBP	13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	LAMC1	P11047	1609 aa		13.45	□□□□□ -0.26
NUP85-223	ENST00000583877	AFF2	P51816	1311 aa		13.44	□□□□□ -0.26
NUP85-223	ENST00000583877	LRRC59	Q96AG4	307 aa	Known RBP	13.43	□□□□□ -0.26
NUP85-223	ENST00000583877	ADGRL3	Q9HAR2	1447 aa		13.42	□□□□□ -0.26
NUP85-223	ENST00000583877	NEXMIF	Q5QGS0	1516 aa		13.42	□□□□□ -0.26
NUP85-223	ENST00000583877	CLTCL1	P53675	1640 aa		13.42	□□□□□ -0.26
NUP85-223	ENST00000583877	MET	P08581	1390 aa		13.41	□□□□□ -0.26
NUP85-223	ENST00000583877	MARF1	Q9Y4F3	1742 aa	Known RBP	13.4	□□□□□ -0.26
NUP85-223	ENST00000583877	PNPLA6	Q8IY17	1366 aa		13.4	□□□□□ -0.26
NUP85-223	ENST00000583877	RGS12	O14924	1447 aa		13.39	□□□□□ -0.27
NUP85-223	ENST00000583877	ZNF326	Q5BKZ1	582 aa	Known RBP	13.39	□□□□□ -0.27
NUP85-223	ENST00000583877	RBM6	P78332	1123 aa	Known RBP	13.38	□□□□□ -0.27
NUP85-223	ENST00000583877	C8orf37	Q96NL8	207 aa		13.38	□□□□□ -0.27
NUP85-223	ENST00000583877	QTRT2	Q9H974	415 aa	Known RBP	13.38	□□□□□ -0.27
NUP85-223	ENST00000583877	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.37	□□□□□ -0.27
NUP85-223	ENST00000583877	PPL	O60437	1756 aa		13.37	□□□□□ -0.27

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