RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 HDGFP51858 240 aaKnown RBP16.34■□□□□ 0.21
RFFL-209ENST00000581265 PROSER2Q86WR7 435 aaPredicted RBP16.34■□□□□ 0.21
RFFL-209ENST00000581265 TRIM52Q96A61 297 aa16.34■□□□□ 0.21
RFFL-209ENST00000581265 ADGRB3O60242 1522 aa16.33■□□□□ 0.2
RFFL-209ENST00000581265 ROCK1Q13464 1354 aa16.32■□□□□ 0.2
RFFL-209ENST00000581265 XIRP1Q702N8 1843 aaKnown RBP16.32■□□□□ 0.2
RFFL-209ENST00000581265 BCANQ96GW7 911 aa16.31■□□□□ 0.2
RFFL-209ENST00000581265 ZFYVE9O95405 1425 aa16.3■□□□□ 0.2
RFFL-209ENST00000581265 JCADQ9P266 1359 aa16.3■□□□□ 0.2
RFFL-209ENST00000581265 ZNF772Q68DY9 489 aaPredicted RBP16.3■□□□□ 0.2
RFFL-209ENST00000581265 PLEKHG1Q9ULL1 1385 aa16.29■□□□□ 0.2
RFFL-209ENST00000581265 RBM33Q96EV2 1170 aaKnown RBP16.29■□□□□ 0.2
RFFL-209ENST00000581265 ROBO1Q9Y6N7 1651 aa16.29■□□□□ 0.2
RFFL-209ENST00000581265 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.28■□□□□ 0.2
RFFL-209ENST00000581265 TBX22Q9Y458 520 aa16.28■□□□□ 0.2
RFFL-209ENST00000581265 RIMS2Q9UQ26 1411 aa16.28■□□□□ 0.2
RFFL-209ENST00000581265 PPP1R15AO75807 674 aaPredicted RBP16.27■□□□□ 0.2
RFFL-209ENST00000581265 NKTRP30414 1462 aaKnown RBP16.27■□□□□ 0.19
RFFL-209ENST00000581265 UNC13BO14795 1591 aa16.26■□□□□ 0.19
RFFL-209ENST00000581265 SLAIN2Q9P270 581 aa16.25■□□□□ 0.19
RFFL-209ENST00000581265 TMEM131LA2VDJ0 1609 aa16.25■□□□□ 0.19
RFFL-209ENST00000581265 NWD1Q149M9 1564 aa16.25■□□□□ 0.19
RFFL-209ENST00000581265 NUP155O75694 1391 aa16.25■□□□□ 0.19
RFFL-209ENST00000581265 MSH6P52701 1360 aa16.25■□□□□ 0.19
RFFL-209ENST00000581265 CHGAP10645 457 aaKnown RBP16.24■□□□□ 0.19
RFFL-209ENST00000581265 RXRBP28702 533 aa16.24■□□□□ 0.19
RFFL-209ENST00000581265 GCC2Q8IWJ2 1684 aa16.24■□□□□ 0.19
RFFL-209ENST00000581265 PHLPP1O60346 1717 aa16.22■□□□□ 0.19
RFFL-209ENST00000581265 ITGAEP38570 1179 aa16.22■□□□□ 0.19
RFFL-209ENST00000581265 SPATA31A6Q5VVP1 1343 aa16.21■□□□□ 0.19
RFFL-209ENST00000581265 NCOA3Q9Y6Q9 1424 aa16.21■□□□□ 0.19
RFFL-209ENST00000581265 MYO5BQ9ULV0 1848 aa16.21■□□□□ 0.19
RFFL-209ENST00000581265 E9PCH4 1651 aa16.21■□□□□ 0.18
RFFL-209ENST00000581265 IQGAP3Q86VI3 1631 aa16.2■□□□□ 0.18
RFFL-209ENST00000581265 CHD2O14647 1828 aaKnown RBP16.2■□□□□ 0.18
RFFL-209ENST00000581265 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
RFFL-209ENST00000581265 ADAMTS13Q76LX8 1427 aa16.19■□□□□ 0.18
RFFL-209ENST00000581265 PIK3R4Q99570 1358 aa16.19■□□□□ 0.18
RFFL-209ENST00000581265 PPARGC1BQ86YN6 1023 aaKnown RBP16.19■□□□□ 0.18
RFFL-209ENST00000581265 C14orf37Q86TY3 774 aa16.18■□□□□ 0.18
RFFL-209ENST00000581265 C19orf44Q9H6X5 657 aa16.17■□□□□ 0.18
RFFL-209ENST00000581265 NUTM2BA6NNL0 878 aaPredicted RBP16.16■□□□□ 0.18
RFFL-209ENST00000581265 NUTM2EB1AL46 878 aaPredicted RBP16.16■□□□□ 0.18
RFFL-209ENST00000581265 FOXD1Q16676 465 aa16.16■□□□□ 0.18
RFFL-209ENST00000581265 NUTM2AQ8IVF1 878 aaPredicted RBP16.16■□□□□ 0.18
RFFL-209ENST00000581265 CADPS2Q86UW7 1296 aa16.15■□□□□ 0.18
RFFL-209ENST00000581265 AMOTL2Q9Y2J4 779 aa16.15■□□□□ 0.18
RFFL-209ENST00000581265 LRP6O75581 1613 aa16.14■□□□□ 0.17
RFFL-209ENST00000581265 DIP2AQ14689 1571 aa16.13■□□□□ 0.17
RFFL-209ENST00000581265 ATF3P18847 181 aa16.12■□□□□ 0.17
RFFL-209ENST00000581265 PTPRUQ92729 1446 aa16.11■□□□□ 0.17
RFFL-209ENST00000581265 CDK12Q9NYV4 1490 aaPredicted RBP16.1■□□□□ 0.17
RFFL-209ENST00000581265 COL16A1Q07092 1604 aaPredicted RBP16.1■□□□□ 0.17
RFFL-209ENST00000581265 TRPM2O94759 1503 aa16.09■□□□□ 0.17
RFFL-209ENST00000581265 ZNF326Q5BKZ1 582 aaKnown RBP16.09■□□□□ 0.17
RFFL-209ENST00000581265 AFF2P51816 1311 aa16.09■□□□□ 0.17
RFFL-209ENST00000581265 RRBP1Q9P2E9 1410 aaKnown RBP16.09■□□□□ 0.17
RFFL-209ENST00000581265 ZRANB1Q9UGI0 708 aa16.08■□□□□ 0.16
RFFL-209ENST00000581265 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.07■□□□□ 0.16
RFFL-209ENST00000581265 SETBP1Q9Y6X0 1596 aa16.06■□□□□ 0.16
RFFL-209ENST00000581265 NAIPQ13075 1403 aa16.06■□□□□ 0.16
RFFL-209ENST00000581265 QTRT2Q9H974 415 aaKnown RBP16.06■□□□□ 0.16
RFFL-209ENST00000581265 SPHKAPQ2M3C7 1700 aa16.05■□□□□ 0.16
RFFL-209ENST00000581265 METP08581 1390 aa16.05■□□□□ 0.16
RFFL-209ENST00000581265 RBM6P78332 1123 aaKnown RBP16.05■□□□□ 0.16
RFFL-209ENST00000581265 BRINP3Q76B58 766 aa16.05■□□□□ 0.16
RFFL-209ENST00000581265 DCCP43146 1447 aa16.04■□□□□ 0.16
RFFL-209ENST00000581265 NRXN3Q9Y4C0 1643 aa16.04■□□□□ 0.16
RFFL-209ENST00000581265 C8orf37Q96NL8 207 aa16.03■□□□□ 0.16
RFFL-209ENST00000581265 SHPRHQ149N8 1683 aa16.02■□□□□ 0.16
RFFL-209ENST00000581265 AHDC1Q5TGY3 1603 aaPredicted RBP16.02■□□□□ 0.16
RFFL-209ENST00000581265 NGLY1Q96IV0 654 aa16.02■□□□□ 0.16
RFFL-209ENST00000581265 VGFO15240 615 aaPredicted RBP16.01■□□□□ 0.15
RFFL-209ENST00000581265 XRN1Q8IZH2 1706 aaKnown RBP16.01■□□□□ 0.15
RFFL-209ENST00000581265 RGS12O14924 1447 aa16.01■□□□□ 0.15
RFFL-209ENST00000581265 ATAD2Q6PL18 1390 aa16■□□□□ 0.15
RFFL-209ENST00000581265 CLTCL1P53675 1640 aa16■□□□□ 0.15
RFFL-209ENST00000581265 NEXMIFQ5QGS0 1516 aa15.99■□□□□ 0.15
RFFL-209ENST00000581265 HFM1A2PYH4 1435 aa15.99■□□□□ 0.15
RFFL-209ENST00000581265 MST1RQ04912 1400 aa15.99■□□□□ 0.15
RFFL-209ENST00000581265 RPGRIP1LQ68CZ1 1315 aa15.98■□□□□ 0.15
RFFL-209ENST00000581265 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
RFFL-209ENST00000581265 ADGRL3Q9HAR2 1447 aa15.97■□□□□ 0.15
RFFL-209ENST00000581265 LRRC59Q96AG4 307 aaKnown RBP15.97■□□□□ 0.15
RFFL-209ENST00000581265 SETD5Q9C0A6 1442 aa15.96■□□□□ 0.15
RFFL-209ENST00000581265 ASXL1Q8IXJ9 1541 aa15.95■□□□□ 0.14
RFFL-209ENST00000581265 KIF1BO60333 1816 aa15.94■□□□□ 0.14
RFFL-209ENST00000581265 ADAMTS2O95450 1211 aa15.93■□□□□ 0.14
RFFL-209ENST00000581265 PTCH1Q13635 1447 aa15.92■□□□□ 0.14
RFFL-209ENST00000581265 ROBO2Q9HCK4 1378 aa15.91■□□□□ 0.14
RFFL-209ENST00000581265 DDX17Q92841 729 aaKnown RBP15.91■□□□□ 0.14
RFFL-209ENST00000581265 PRAG1Q86YV5 1406 aa15.91■□□□□ 0.14
RFFL-209ENST00000581265 CCDC125Q86Z20 511 aa15.9■□□□□ 0.14
RFFL-209ENST00000581265 USP21Q9UK80 565 aa15.9■□□□□ 0.14
RFFL-209ENST00000581265 C1orf167Q5SNV9 1468 aa15.9■□□□□ 0.14
RFFL-209ENST00000581265 TRPC5Q9UL62 973 aaPredicted RBP15.89■□□□□ 0.13
RFFL-209ENST00000581265 NHSL1Q5SYE7 1610 aa15.89■□□□□ 0.13
RFFL-209ENST00000581265 ORAI2Q96SN7 254 aa15.88■□□□□ 0.13
RFFL-209ENST00000581265 NALCNQ8IZF0 1738 aa15.88■□□□□ 0.13
RFFL-209ENST00000581265 PNPLA6Q8IY17 1366 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms