RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 IDI1Q13907 227 aa20.63■□□□□ 0.89
TRAF4-214ENST00000580073 E9PCH4 1651 aa20.63■□□□□ 0.89
TRAF4-214ENST00000580073 DIP2AQ14689 1571 aa20.62■□□□□ 0.89
TRAF4-214ENST00000580073 KCNA6P17658 529 aa20.6■□□□□ 0.89
TRAF4-214ENST00000580073 HDGFP51858 240 aaKnown RBP20.6■□□□□ 0.89
TRAF4-214ENST00000580073 FAM135BQ49AJ0 1406 aa20.6■□□□□ 0.89
TRAF4-214ENST00000580073 TMEM94Q12767 1356 aa20.59■□□□□ 0.89
TRAF4-214ENST00000580073 ROCK1Q13464 1354 aa20.59■□□□□ 0.89
TRAF4-214ENST00000580073 ZFYVE9O95405 1425 aa20.58■□□□□ 0.88
TRAF4-214ENST00000580073 PLEKHG1Q9ULL1 1385 aa20.58■□□□□ 0.88
TRAF4-214ENST00000580073 PHLPP1O60346 1717 aa20.56■□□□□ 0.88
TRAF4-214ENST00000580073 MSH6P52701 1360 aa20.56■□□□□ 0.88
TRAF4-214ENST00000580073 PPP1R15AO75807 674 aaPredicted RBP20.55■□□□□ 0.88
TRAF4-214ENST00000580073 BCANQ96GW7 911 aa20.55■□□□□ 0.88
TRAF4-214ENST00000580073 SPHKAPQ2M3C7 1700 aa20.55■□□□□ 0.88
TRAF4-214ENST00000580073 RIMS2Q9UQ26 1411 aa20.54■□□□□ 0.88
TRAF4-214ENST00000580073 PROSER2Q86WR7 435 aaPredicted RBP20.54■□□□□ 0.88
TRAF4-214ENST00000580073 SENP3Q9H4L4 574 aaPredicted RBP20.54■□□□□ 0.88
TRAF4-214ENST00000580073 SLC26A8Q96RN1 970 aa20.53■□□□□ 0.88
TRAF4-214ENST00000580073 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.51■□□□□ 0.87
TRAF4-214ENST00000580073 TRPM2O94759 1503 aa20.5■□□□□ 0.87
TRAF4-214ENST00000580073 NCOA3Q9Y6Q9 1424 aa20.5■□□□□ 0.87
TRAF4-214ENST00000580073 PIK3R4Q99570 1358 aa20.47■□□□□ 0.87
TRAF4-214ENST00000580073 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.45■□□□□ 0.86
TRAF4-214ENST00000580073 KIF1BO60333 1816 aa20.44■□□□□ 0.86
TRAF4-214ENST00000580073 CHGAP10645 457 aaKnown RBP20.44■□□□□ 0.86
TRAF4-214ENST00000580073 TBX22Q9Y458 520 aa20.43■□□□□ 0.86
TRAF4-214ENST00000580073 COL16A1Q07092 1604 aaPredicted RBP20.42■□□□□ 0.86
TRAF4-214ENST00000580073 NUP155O75694 1391 aa20.42■□□□□ 0.86
TRAF4-214ENST00000580073 SHPRHQ149N8 1683 aa20.41■□□□□ 0.86
TRAF4-214ENST00000580073 SETD1AO15047 1707 aaKnown RBP20.41■□□□□ 0.86
TRAF4-214ENST00000580073 AHDC1Q5TGY3 1603 aaPredicted RBP20.4■□□□□ 0.86
TRAF4-214ENST00000580073 ADAMTS13Q76LX8 1427 aa20.4■□□□□ 0.86
TRAF4-214ENST00000580073 XRN1Q8IZH2 1706 aaKnown RBP20.4■□□□□ 0.86
TRAF4-214ENST00000580073 SETBP1Q9Y6X0 1596 aa20.4■□□□□ 0.86
TRAF4-214ENST00000580073 JCADQ9P266 1359 aa20.39■□□□□ 0.85
TRAF4-214ENST00000580073 C14orf37Q86TY3 774 aa20.38■□□□□ 0.85
TRAF4-214ENST00000580073 SLAIN2Q9P270 581 aa20.38■□□□□ 0.85
TRAF4-214ENST00000580073 NRXN3Q9Y4C0 1643 aa20.38■□□□□ 0.85
TRAF4-214ENST00000580073 DCCP43146 1447 aa20.36■□□□□ 0.85
TRAF4-214ENST00000580073 CADPS2Q86UW7 1296 aa20.36■□□□□ 0.85
TRAF4-214ENST00000580073 RBM33Q96EV2 1170 aaKnown RBP20.36■□□□□ 0.85
TRAF4-214ENST00000580073 CLTCL1P53675 1640 aa20.33■□□□□ 0.84
TRAF4-214ENST00000580073 ATF3P18847 181 aa20.32■□□□□ 0.84
TRAF4-214ENST00000580073 ITGAEP38570 1179 aa20.32■□□□□ 0.84
TRAF4-214ENST00000580073 C19orf44Q9H6X5 657 aa20.31■□□□□ 0.84
TRAF4-214ENST00000580073 RGS17Q9UGC6 210 aaPredicted RBP20.31■□□□□ 0.84
TRAF4-214ENST00000580073 NHSL1Q5SYE7 1610 aa20.31■□□□□ 0.84
TRAF4-214ENST00000580073 SPATA31A6Q5VVP1 1343 aa20.3■□□□□ 0.84
TRAF4-214ENST00000580073 NEXMIFQ5QGS0 1516 aa20.29■□□□□ 0.84
TRAF4-214ENST00000580073 RRBP1Q9P2E9 1410 aaKnown RBP20.28■□□□□ 0.84
TRAF4-214ENST00000580073 NALCNQ8IZF0 1738 aa20.28■□□□□ 0.84
TRAF4-214ENST00000580073 NUTM2DQ5VT03 806 aaPredicted RBP20.28■□□□□ 0.84
TRAF4-214ENST00000580073 PPARGC1BQ86YN6 1023 aaKnown RBP20.27■□□□□ 0.84
TRAF4-214ENST00000580073 ZNF326Q5BKZ1 582 aaKnown RBP20.26■□□□□ 0.83
TRAF4-214ENST00000580073 AMOTL2Q9Y2J4 779 aa20.26■□□□□ 0.83
TRAF4-214ENST00000580073 ASXL1Q8IXJ9 1541 aa20.26■□□□□ 0.83
TRAF4-214ENST00000580073 PTPRUQ92729 1446 aa20.25■□□□□ 0.83
TRAF4-214ENST00000580073 MEX3CQ5U5Q3 659 aaKnown RBP20.23■□□□□ 0.83
TRAF4-214ENST00000580073 PPLO60437 1756 aa20.23■□□□□ 0.83
TRAF4-214ENST00000580073 ADGRL3Q9HAR2 1447 aa20.22■□□□□ 0.83
TRAF4-214ENST00000580073 POTEAQ6S8J7 498 aa20.22■□□□□ 0.83
TRAF4-214ENST00000580073 LRP6O75581 1613 aa20.22■□□□□ 0.83
TRAF4-214ENST00000580073 NAIPQ13075 1403 aa20.2■□□□□ 0.82
TRAF4-214ENST00000580073 ZNF772Q68DY9 489 aaPredicted RBP20.2■□□□□ 0.82
TRAF4-214ENST00000580073 MST1RQ04912 1400 aa20.19■□□□□ 0.82
TRAF4-214ENST00000580073 HFM1A2PYH4 1435 aa20.18■□□□□ 0.82
TRAF4-214ENST00000580073 PTCH1Q13635 1447 aa20.18■□□□□ 0.82
TRAF4-214ENST00000580073 LAMC1P11047 1609 aa20.17■□□□□ 0.82
TRAF4-214ENST00000580073 SETD5Q9C0A6 1442 aa20.17■□□□□ 0.82
TRAF4-214ENST00000580073 BRINP3Q76B58 766 aa20.16■□□□□ 0.82
TRAF4-214ENST00000580073 METP08581 1390 aa20.15■□□□□ 0.82
TRAF4-214ENST00000580073 PRAG1Q86YV5 1406 aa20.14■□□□□ 0.81
TRAF4-214ENST00000580073 CDK12Q9NYV4 1490 aaPredicted RBP20.12■□□□□ 0.81
TRAF4-214ENST00000580073 VGFO15240 615 aaPredicted RBP20.12■□□□□ 0.81
TRAF4-214ENST00000580073 IFT172Q9UG01 1749 aa20.11■□□□□ 0.81
TRAF4-214ENST00000580073 RPGRIP1LQ68CZ1 1315 aa20.1■□□□□ 0.81
TRAF4-214ENST00000580073 TRIM52Q96A61 297 aa20.09■□□□□ 0.81
TRAF4-214ENST00000580073 LRRC59Q96AG4 307 aaKnown RBP20.09■□□□□ 0.81
TRAF4-214ENST00000580073 KNDC1Q76NI1 1749 aa20.08■□□□□ 0.81
TRAF4-214ENST00000580073 CDC42BPGQ6DT37 1551 aa20.08■□□□□ 0.8
TRAF4-214ENST00000580073 C1orf167Q5SNV9 1468 aa20.06■□□□□ 0.8
TRAF4-214ENST00000580073 SLC4A1APQ9BWU0 796 aaKnown RBP20.06■□□□□ 0.8
TRAF4-214ENST00000580073 NUTM2BA6NNL0 878 aaPredicted RBP20.05■□□□□ 0.8
TRAF4-214ENST00000580073 NUTM2EB1AL46 878 aaPredicted RBP20.05■□□□□ 0.8
TRAF4-214ENST00000580073 NUTM2AQ8IVF1 878 aaPredicted RBP20.05■□□□□ 0.8
TRAF4-214ENST00000580073 PNPLA6Q8IY17 1366 aa20.05■□□□□ 0.8
TRAF4-214ENST00000580073 COL22A1Q8NFW1 1626 aaPredicted RBP20.05■□□□□ 0.8
TRAF4-214ENST00000580073 MARF1Q9Y4F3 1742 aaKnown RBP20.05■□□□□ 0.8
TRAF4-214ENST00000580073 CCDC144AA2RUR9 1427 aa20.03■□□□□ 0.8
TRAF4-214ENST00000580073 RXRBP28702 533 aa20.03■□□□□ 0.8
TRAF4-214ENST00000580073 AFF2P51816 1311 aa20.02■□□□□ 0.8
TRAF4-214ENST00000580073 ROBO2Q9HCK4 1378 aa20■□□□□ 0.79
TRAF4-214ENST00000580073 KIF1AQ12756 1690 aa20■□□□□ 0.79
TRAF4-214ENST00000580073 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
TRAF4-214ENST00000580073 ANKRD30BQ9BXX2 1392 aa19.97■□□□□ 0.79
TRAF4-214ENST00000580073 C8orf37Q96NL8 207 aa19.96■□□□□ 0.79
TRAF4-214ENST00000580073 FMN2Q9NZ56 1722 aa19.96■□□□□ 0.79
TRAF4-214ENST00000580073 TECPR2O15040 1411 aa19.95■□□□□ 0.78
TRAF4-214ENST00000580073 SOS2Q07890 1332 aaPredicted RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms