RNA–Protein interactions for RNA: ENST00000579028.1

BRIP1-204, Transcript of BRCA1 interacting protein C-terminal helicase 1, human

TSL 5

Gene BRIP1, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRIP1-204	ENST00000579028	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
BRIP1-204	ENST00000579028	RRP7BP	Q9NSQ0	103 aa		13.81	□□□□□ -0.2
BRIP1-204	ENST00000579028	NOS1	P29475	1434 aa		13.81	□□□□□ -0.2
BRIP1-204	ENST00000579028	COL16A1	Q07092	1604 aa	Predicted RBP	13.79	□□□□□ -0.2
BRIP1-204	ENST00000579028	SLAIN2	Q9P270	581 aa		13.79	□□□□□ -0.2
BRIP1-204	ENST00000579028	CHD2	O14647	1828 aa	Known RBP	13.77	□□□□□ -0.21
BRIP1-204	ENST00000579028	DAPK1	P53355	1430 aa		13.77	□□□□□ -0.21
BRIP1-204	ENST00000579028	FGD6	Q6ZV73	1430 aa		13.77	□□□□□ -0.21
BRIP1-204	ENST00000579028	PTPN23	Q9H3S7	1636 aa		13.77	□□□□□ -0.21
BRIP1-204	ENST00000579028	SLC52A1	Q9NWF4	448 aa		13.76	□□□□□ -0.21
BRIP1-204	ENST00000579028	LRP6	O75581	1613 aa		13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	ZFYVE9	O95405	1425 aa		13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	NCOA3	Q9Y6Q9	1424 aa		13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	PLEKHG1	Q9ULL1	1385 aa		13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	SPATA31A6	Q5VVP1	1343 aa		13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
BRIP1-204	ENST00000579028	ANKRD30A	Q9BXX3	1397 aa		13.73	□□□□□ -0.21
BRIP1-204	ENST00000579028	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.73	□□□□□ -0.21
BRIP1-204	ENST00000579028	ZNF772	Q68DY9	489 aa	Predicted RBP	13.73	□□□□□ -0.21
BRIP1-204	ENST00000579028	RPRD2	Q5VT52	1461 aa	Known RBP	13.73	□□□□□ -0.21
BRIP1-204	ENST00000579028	SHPRH	Q149N8	1683 aa		13.72	□□□□□ -0.21
BRIP1-204	ENST00000579028	BCAN	Q96GW7	911 aa		13.72	□□□□□ -0.21
BRIP1-204	ENST00000579028	MYO5B	Q9ULV0	1848 aa		13.71	□□□□□ -0.21
BRIP1-204	ENST00000579028	RIMS2	Q9UQ26	1411 aa		13.71	□□□□□ -0.22
BRIP1-204	ENST00000579028	GCC2	Q8IWJ2	1684 aa		13.7	□□□□□ -0.22
BRIP1-204	ENST00000579028	TBX22	Q9Y458	520 aa		13.7	□□□□□ -0.22
BRIP1-204	ENST00000579028	TMEM131L	A2VDJ0	1609 aa		13.7	□□□□□ -0.22
BRIP1-204	ENST00000579028	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.7	□□□□□ -0.22
BRIP1-204	ENST00000579028	HDGF	P51858	240 aa	Known RBP	13.69	□□□□□ -0.22
BRIP1-204	ENST00000579028	MEX3C	Q5U5Q3	659 aa	Known RBP	13.69	□□□□□ -0.22
BRIP1-204	ENST00000579028	TRIM52	Q96A61	297 aa		13.69	□□□□□ -0.22
BRIP1-204	ENST00000579028	ADGRL2	O95490	1459 aa		13.68	□□□□□ -0.22
BRIP1-204	ENST00000579028	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.68	□□□□□ -0.22
BRIP1-204	ENST00000579028	CADPS2	Q86UW7	1296 aa		13.68	□□□□□ -0.22
BRIP1-204	ENST00000579028	CHIC2	Q9UKJ5	165 aa		13.68	□□□□□ -0.22
BRIP1-204	ENST00000579028	DIP2A	Q14689	1571 aa		13.67	□□□□□ -0.22
BRIP1-204	ENST00000579028	ADAMTS13	Q76LX8	1427 aa		13.67	□□□□□ -0.22
BRIP1-204	ENST00000579028	PPP1R15A	O75807	674 aa	Predicted RBP	13.67	□□□□□ -0.22
BRIP1-204	ENST00000579028	C19orf44	Q9H6X5	657 aa		13.67	□□□□□ -0.22
BRIP1-204	ENST00000579028	PIK3R4	Q99570	1358 aa		13.67	□□□□□ -0.22
BRIP1-204	ENST00000579028	RXRB	P28702	533 aa		13.66	□□□□□ -0.22
BRIP1-204	ENST00000579028	C14orf37	Q86TY3	774 aa		13.65	□□□□□ -0.22
BRIP1-204	ENST00000579028	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
BRIP1-204	ENST00000579028	ATF3	P18847	181 aa		13.64	□□□□□ -0.23
BRIP1-204	ENST00000579028	ANKRD50	Q9ULJ7	1429 aa		13.64	□□□□□ -0.23
BRIP1-204	ENST00000579028	BRINP3	Q76B58	766 aa		13.63	□□□□□ -0.23
BRIP1-204	ENST00000579028	DCC	P43146	1447 aa		13.63	□□□□□ -0.23
BRIP1-204	ENST00000579028	TRPM2	O94759	1503 aa		13.62	□□□□□ -0.23
BRIP1-204	ENST00000579028	SETD5	Q9C0A6	1442 aa		13.62	□□□□□ -0.23
BRIP1-204	ENST00000579028	LOC105371045	A0A1W2PR82	267 aa		13.61	□□□□□ -0.23
BRIP1-204	ENST00000579028	ASXL1	Q8IXJ9	1541 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	NUTM2E	B1AL46	878 aa	Predicted RBP	13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	UNC13B	O14795	1591 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	APLP2	Q06481	763 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	PTPRU	Q92729	1446 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	NHSL1	Q5SYE7	1610 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	AFF2	P51816	1311 aa		13.6	□□□□□ -0.23
BRIP1-204	ENST00000579028	AMOTL2	Q9Y2J4	779 aa		13.59	□□□□□ -0.23
BRIP1-204	ENST00000579028		E9PCH4	1651 aa		13.59	□□□□□ -0.23
BRIP1-204	ENST00000579028	RGS12	O14924	1447 aa		13.58	□□□□□ -0.24
BRIP1-204	ENST00000579028	CHGA	P10645	457 aa	Known RBP	13.58	□□□□□ -0.24
BRIP1-204	ENST00000579028	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.58	□□□□□ -0.24
BRIP1-204	ENST00000579028	XRN1	Q8IZH2	1706 aa	Known RBP	13.58	□□□□□ -0.24
BRIP1-204	ENST00000579028	MST1R	Q04912	1400 aa		13.57	□□□□□ -0.24
BRIP1-204	ENST00000579028	NRXN3	Q9Y4C0	1643 aa		13.55	□□□□□ -0.24
BRIP1-204	ENST00000579028	RBM6	P78332	1123 aa	Known RBP	13.55	□□□□□ -0.24
BRIP1-204	ENST00000579028	LRRC59	Q96AG4	307 aa	Known RBP	13.55	□□□□□ -0.24
BRIP1-204	ENST00000579028	PNPLA6	Q8IY17	1366 aa		13.55	□□□□□ -0.24
BRIP1-204	ENST00000579028	SETBP1	Q9Y6X0	1596 aa		13.54	□□□□□ -0.24
BRIP1-204	ENST00000579028	IQGAP3	Q86VI3	1631 aa		13.54	□□□□□ -0.24
BRIP1-204	ENST00000579028	QTRT2	Q9H974	415 aa	Known RBP	13.54	□□□□□ -0.24
BRIP1-204	ENST00000579028	HOXD11	P31277	338 aa	Predicted RBP	13.53	□□□□□ -0.24
BRIP1-204	ENST00000579028	CNKSR2	Q8WXI2	1034 aa		13.53	□□□□□ -0.24
BRIP1-204	ENST00000579028	C8orf37	Q96NL8	207 aa		13.53	□□□□□ -0.24
BRIP1-204	ENST00000579028	FAM50A	Q14320	339 aa	Known RBP	13.52	□□□□□ -0.25
BRIP1-204	ENST00000579028	ADGRL3	Q9HAR2	1447 aa		13.51	□□□□□ -0.25
BRIP1-204	ENST00000579028	LAMC1	P11047	1609 aa		13.5	□□□□□ -0.25
BRIP1-204	ENST00000579028	NALCN	Q8IZF0	1738 aa		13.5	□□□□□ -0.25
BRIP1-204	ENST00000579028	MET	P08581	1390 aa		13.49	□□□□□ -0.25
BRIP1-204	ENST00000579028	ATAD2	Q6PL18	1390 aa		13.49	□□□□□ -0.25
BRIP1-204	ENST00000579028	DDX17	Q92841	729 aa	Known RBP	13.49	□□□□□ -0.25
BRIP1-204	ENST00000579028	NGLY1	Q96IV0	654 aa		13.49	□□□□□ -0.25
BRIP1-204	ENST00000579028	ROCK1	Q13464	1354 aa		13.48	□□□□□ -0.25
BRIP1-204	ENST00000579028	SPHKAP	Q2M3C7	1700 aa		13.46	□□□□□ -0.25
BRIP1-204	ENST00000579028	C1orf167	Q5SNV9	1468 aa		13.46	□□□□□ -0.25
BRIP1-204	ENST00000579028	NUP155	O75694	1391 aa		13.45	□□□□□ -0.26
BRIP1-204	ENST00000579028	SOS2	Q07890	1332 aa	Predicted RBP	13.45	□□□□□ -0.26
BRIP1-204	ENST00000579028	ADAMTS2	O95450	1211 aa		13.45	□□□□□ -0.26
BRIP1-204	ENST00000579028	PTCH1	Q13635	1447 aa		13.45	□□□□□ -0.26
BRIP1-204	ENST00000579028	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.44	□□□□□ -0.26
BRIP1-204	ENST00000579028	USP21	Q9UK80	565 aa		13.44	□□□□□ -0.26
BRIP1-204	ENST00000579028	TRPC5	Q9UL62	973 aa	Predicted RBP	13.44	□□□□□ -0.26
BRIP1-204	ENST00000579028	ATRN	O75882	1429 aa		13.43	□□□□□ -0.26
BRIP1-204	ENST00000579028	ZRANB1	Q9UGI0	708 aa		13.43	□□□□□ -0.26
BRIP1-204	ENST00000579028	NEXMIF	Q5QGS0	1516 aa		13.43	□□□□□ -0.26
BRIP1-204	ENST00000579028	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.42	□□□□□ -0.26
BRIP1-204	ENST00000579028	ZNF326	Q5BKZ1	582 aa	Known RBP	13.42	□□□□□ -0.26
BRIP1-204	ENST00000579028	RNF216	Q9NWF9	866 aa	Predicted RBP	13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 72 ms