RNA–Protein interactions for RNA: ENST00000578469.1

SREBF1-218, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 588 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-218ENST00000578469 NBPF8Q3BBV2 869 aa23.93■■□□□ 1.42
SREBF1-218ENST00000578469 PHF23Q9BUL5 403 aaPredicted RBP23.93■■□□□ 1.42
SREBF1-218ENST00000578469 ABCC3O15438 1527 aa23.93■■□□□ 1.42
SREBF1-218ENST00000578469 SYNMO15061 1565 aa23.92■■□□□ 1.42
SREBF1-218ENST00000578469 EIF4G2P78344 907 aaKnown RBP eCLIP23.91■■□□□ 1.42
SREBF1-218ENST00000578469 TRPM2O94759 1503 aa23.9■■□□□ 1.42
SREBF1-218ENST00000578469 ERVK-7P63135 1459 aa23.89■■□□□ 1.42
SREBF1-218ENST00000578469 SPHKAPQ2M3C7 1700 aa23.89■■□□□ 1.41
SREBF1-218ENST00000578469 EFCAB6Q5THR3 1501 aa23.89■■□□□ 1.41
SREBF1-218ENST00000578469 DCAF11Q8TEB1 546 aa23.88■■□□□ 1.41
SREBF1-218ENST00000578469 ZNF326Q5BKZ1 582 aaKnown RBP23.86■■□□□ 1.41
SREBF1-218ENST00000578469 LRRC7Q96NW7 1537 aa23.84■■□□□ 1.41
SREBF1-218ENST00000578469 ALKQ9UM73 1620 aa23.84■■□□□ 1.41
SREBF1-218ENST00000578469 CEP152O94986 1710 aa23.84■■□□□ 1.41
SREBF1-218ENST00000578469 HSPA5P11021 654 aaKnown RBP23.84■■□□□ 1.41
SREBF1-218ENST00000578469 RGL3Q3MIN7 710 aa23.84■■□□□ 1.41
SREBF1-218ENST00000578469 KDM2AQ9Y2K7 1162 aa23.84■■□□□ 1.41
SREBF1-218ENST00000578469 HIRIP3Q9BW71 556 aaPredicted RBP23.83■■□□□ 1.41
SREBF1-218ENST00000578469 SCAF11Q99590 1463 aaKnown RBP23.82■■□□□ 1.4
SREBF1-218ENST00000578469 STRCP1A6NGW2 1772 aa23.81■■□□□ 1.4
SREBF1-218ENST00000578469 UBR1Q8IWV7 1749 aa23.81■■□□□ 1.4
SREBF1-218ENST00000578469 RALGAPBQ86X10 1494 aa23.81■■□□□ 1.4
SREBF1-218ENST00000578469 STAC3Q96MF2 364 aa23.8■■□□□ 1.4
SREBF1-218ENST00000578469 SPATA31E1Q6ZUB1 1445 aa23.79■■□□□ 1.4
SREBF1-218ENST00000578469 CLTCL1P53675 1640 aa23.79■■□□□ 1.4
SREBF1-218ENST00000578469 SENP3Q9H4L4 574 aaPredicted RBP23.77■■□□□ 1.4
SREBF1-218ENST00000578469 PRAG1Q86YV5 1406 aa23.76■■□□□ 1.39
SREBF1-218ENST00000578469 SLIT1O75093 1534 aa23.75■■□□□ 1.39
SREBF1-218ENST00000578469 CFAP65Q6ZU64 1925 aaKnown RBP23.74■■□□□ 1.39
SREBF1-218ENST00000578469 EID1Q9Y6B2 187 aa23.74■■□□□ 1.39
SREBF1-218ENST00000578469 ARHGAP31Q2M1Z3 1444 aa23.74■■□□□ 1.39
SREBF1-218ENST00000578469 ARHGAP23Q9P227 1491 aa23.74■■□□□ 1.39
SREBF1-218ENST00000578469 DDX10Q13206 875 aaKnown RBP23.72■■□□□ 1.39
SREBF1-218ENST00000578469 TXNDC2Q86VQ3 553 aa23.72■■□□□ 1.39
SREBF1-218ENST00000578469 MIER1Q8N108 512 aa23.72■■□□□ 1.39
SREBF1-218ENST00000578469 CARD11Q9BXL7 1154 aa23.72■■□□□ 1.39
SREBF1-218ENST00000578469 USP47Q96K76 1375 aa23.7■■□□□ 1.38
SREBF1-218ENST00000578469 ROCK2O75116 1388 aaKnown RBP23.69■■□□□ 1.38
SREBF1-218ENST00000578469 KIF1BO60333 1816 aa23.68■■□□□ 1.38
SREBF1-218ENST00000578469 STAG3Q9UJ98 1225 aa23.68■■□□□ 1.38
SREBF1-218ENST00000578469 TRPM1Q7Z4N2 1603 aa23.67■■□□□ 1.38
SREBF1-218ENST00000578469 LTKP29376 864 aa23.67■■□□□ 1.38
SREBF1-218ENST00000578469 NOS1P29475 1434 aa23.67■■□□□ 1.38
SREBF1-218ENST00000578469 PIK3C2BO00750 1634 aa23.66■■□□□ 1.38
SREBF1-218ENST00000578469 TMEM2Q9UHN6 1383 aa23.64■■□□□ 1.37
SREBF1-218ENST00000578469 KDM5AP29375 1690 aaKnown RBP23.63■■□□□ 1.37
SREBF1-218ENST00000578469 GPRASP1Q5JY77 1395 aa23.63■■□□□ 1.37
SREBF1-218ENST00000578469 XIRP1Q702N8 1843 aaKnown RBP23.62■■□□□ 1.37
SREBF1-218ENST00000578469 WASHC2AQ641Q2 1341 aa23.61■■□□□ 1.37
SREBF1-218ENST00000578469 CHGAP10645 457 aaKnown RBP23.61■■□□□ 1.37
SREBF1-218ENST00000578469 LAMC1P11047 1609 aa23.61■■□□□ 1.37
SREBF1-218ENST00000578469 CCDC7Q96M83 1385 aa23.6■■□□□ 1.37
SREBF1-218ENST00000578469 FAM135BQ49AJ0 1406 aa23.59■■□□□ 1.37
SREBF1-218ENST00000578469 ADGRB3O60242 1522 aa23.59■■□□□ 1.37
SREBF1-218ENST00000578469 SLC52A1Q9NWF4 448 aa23.59■■□□□ 1.37
SREBF1-218ENST00000578469 MYOM2P54296 1465 aa23.59■■□□□ 1.37
SREBF1-218ENST00000578469 RPGRIP1LQ68CZ1 1315 aa23.59■■□□□ 1.37
SREBF1-218ENST00000578469 TMEM94Q12767 1356 aa23.57■■□□□ 1.36
SREBF1-218ENST00000578469 NBPF1Q3BBV0 1214 aa23.56■■□□□ 1.36
SREBF1-218ENST00000578469 KCNA6P17658 529 aa23.54■■□□□ 1.36
SREBF1-218ENST00000578469 C11orf95C9JLR9 678 aaPredicted RBP23.53■■□□□ 1.36
SREBF1-218ENST00000578469 ANP32CO43423 234 aa23.53■■□□□ 1.36
SREBF1-218ENST00000578469 NKTRP30414 1462 aaKnown RBP23.53■■□□□ 1.36
SREBF1-218ENST00000578469 KIF7Q2M1P5 1343 aa23.53■■□□□ 1.36
SREBF1-218ENST00000578469 ROBO1Q9Y6N7 1651 aa23.52■■□□□ 1.36
SREBF1-218ENST00000578469 ST20-MTHFSA0A0A6YYL1 179 aa23.52■■□□□ 1.36
SREBF1-218ENST00000578469 IFT172Q9UG01 1749 aa23.52■■□□□ 1.36
SREBF1-218ENST00000578469 KIAA1210Q9ULL0 1709 aa23.51■■□□□ 1.35
SREBF1-218ENST00000578469 IDI1Q13907 227 aa23.51■■□□□ 1.35
SREBF1-218ENST00000578469 PROSER2Q86WR7 435 aaPredicted RBP23.51■■□□□ 1.35
SREBF1-218ENST00000578469 RGS17Q9UGC6 210 aaPredicted RBP23.51■■□□□ 1.35
SREBF1-218ENST00000578469 NWD1Q149M9 1564 aa23.49■■□□□ 1.35
SREBF1-218ENST00000578469 SLC26A8Q96RN1 970 aa23.49■■□□□ 1.35
SREBF1-218ENST00000578469 BCANQ96GW7 911 aa23.48■■□□□ 1.35
SREBF1-218ENST00000578469 MSH6P52701 1360 aa23.48■■□□□ 1.35
SREBF1-218ENST00000578469 ADGRF5Q8IZF2 1346 aa23.47■■□□□ 1.35
SREBF1-218ENST00000578469 NRXN1Q9ULB1 1477 aa23.47■■□□□ 1.35
SREBF1-218ENST00000578469 PPLO60437 1756 aa23.45■■□□□ 1.34
SREBF1-218ENST00000578469 VGFO15240 615 aaPredicted RBP23.45■■□□□ 1.34
SREBF1-218ENST00000578469 EIF3AQ14152 1382 aaKnown RBP23.42■■□□□ 1.34
SREBF1-218ENST00000578469 POLR3GLQ9BT43 218 aa23.42■■□□□ 1.34
SREBF1-218ENST00000578469 CFAP70Q5T0N1 1121 aa23.41■■□□□ 1.34
SREBF1-218ENST00000578469 HDGFP51858 240 aaKnown RBP23.4■■□□□ 1.34
SREBF1-218ENST00000578469 POTEAQ6S8J7 498 aa23.4■■□□□ 1.34
SREBF1-218ENST00000578469 RBM33Q96EV2 1170 aaKnown RBP23.4■■□□□ 1.34
SREBF1-218ENST00000578469 PHLPP1O60346 1717 aa23.39■■□□□ 1.34
SREBF1-218ENST00000578469 CCER2I3L3R5 266 aa23.39■■□□□ 1.33
SREBF1-218ENST00000578469 TMEM131LA2VDJ0 1609 aa23.39■■□□□ 1.33
SREBF1-218ENST00000578469 PIK3C2GO75747 1445 aa23.39■■□□□ 1.33
SREBF1-218ENST00000578469 PLEKHG1Q9ULL1 1385 aa23.39■■□□□ 1.33
SREBF1-218ENST00000578469 NEXMIFQ5QGS0 1516 aa23.38■■□□□ 1.33
SREBF1-218ENST00000578469 TMF1P82094 1093 aa23.38■■□□□ 1.33
SREBF1-218ENST00000578469 ZFYVE9O95405 1425 aa23.38■■□□□ 1.33
SREBF1-218ENST00000578469 JCADQ9P266 1359 aa23.38■■□□□ 1.33
SREBF1-218ENST00000578469 SLC24A1O60721 1099 aa23.37■■□□□ 1.33
SREBF1-218ENST00000578469 C14orf93Q9H972 538 aaKnown RBP23.37■■□□□ 1.33
SREBF1-218ENST00000578469 SLAIN2Q9P270 581 aa23.37■■□□□ 1.33
SREBF1-218ENST00000578469 SETBP1Q9Y6X0 1596 aa23.36■■□□□ 1.33
SREBF1-218ENST00000578469 CENPBP07199 599 aaPredicted RBP23.36■■□□□ 1.33
SREBF1-218ENST00000578469 TESK2Q96S53 571 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms