RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 TRAK2O60296 914 aa12.8□□□□□ -0.36
PTPRM-205ENST00000577827 MAP7D2Q96T17 732 aa12.8□□□□□ -0.36
PTPRM-205ENST00000577827 PTPRGP23470 1445 aa12.8□□□□□ -0.36
PTPRM-205ENST00000577827 HECW1Q76N89 1606 aa12.8□□□□□ -0.36
PTPRM-205ENST00000577827 API5Q9BZZ5 524 aaKnown RBP12.8□□□□□ -0.36
PTPRM-205ENST00000577827 DAPK1P53355 1430 aa12.8□□□□□ -0.36
PTPRM-205ENST00000577827 TRIM6-TRIM34B2RNG4 842 aa12.79□□□□□ -0.36
PTPRM-205ENST00000577827 PANK1Q8TE04 598 aa12.79□□□□□ -0.36
PTPRM-205ENST00000577827 PLEKHH2Q8IVE3 1493 aa12.79□□□□□ -0.36
PTPRM-205ENST00000577827 ANKRD30BQ9BXX2 1392 aa12.79□□□□□ -0.36
PTPRM-205ENST00000577827 PCF11O94913 1555 aaKnown RBP12.79□□□□□ -0.36
PTPRM-205ENST00000577827 MTERF4Q7Z6M4 381 aaKnown RBP12.79□□□□□ -0.36
PTPRM-205ENST00000577827 MAPKBP1O60336 1514 aa12.78□□□□□ -0.36
PTPRM-205ENST00000577827 ANO8Q9HCE9 1232 aaPredicted RBP12.78□□□□□ -0.36
PTPRM-205ENST00000577827 VGFO15240 615 aaPredicted RBP12.78□□□□□ -0.36
PTPRM-205ENST00000577827 GPATCH3Q96I76 525 aa12.78□□□□□ -0.36
PTPRM-205ENST00000577827 TPM2P07951 284 aa12.77□□□□□ -0.36
PTPRM-205ENST00000577827 CT47B1P0C2W7 299 aaPredicted RBP12.76□□□□□ -0.37
PTPRM-205ENST00000577827 PLPPR3Q6T4P5 718 aa12.76□□□□□ -0.37
PTPRM-205ENST00000577827 NAP1L2Q9ULW6 460 aaPredicted RBP12.76□□□□□ -0.37
PTPRM-205ENST00000577827 PEG3Q9GZU2 1588 aa12.75□□□□□ -0.37
PTPRM-205ENST00000577827 TPM4P67936 248 aa12.75□□□□□ -0.37
PTPRM-205ENST00000577827 INTS3Q68E01 1043 aaKnown RBP12.75□□□□□ -0.37
PTPRM-205ENST00000577827 PDZRN3Q9UPQ7 1066 aa12.75□□□□□ -0.37
PTPRM-205ENST00000577827 DIAPH1O60610 1272 aaKnown RBP12.75□□□□□ -0.37
PTPRM-205ENST00000577827 NASPP49321 788 aaPredicted RBP12.75□□□□□ -0.37
PTPRM-205ENST00000577827 TROQ12816 1431 aaPredicted RBP12.75□□□□□ -0.37
PTPRM-205ENST00000577827 C11orf95C9JLR9 678 aaPredicted RBP12.74□□□□□ -0.37
PTPRM-205ENST00000577827 ARID3AQ99856 593 aa12.74□□□□□ -0.37
PTPRM-205ENST00000577827 RIPK4P57078 832 aa12.74□□□□□ -0.37
PTPRM-205ENST00000577827 C9orf84Q5VXU9 1444 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 RPRD2Q5VT52 1461 aaKnown RBP12.73□□□□□ -0.37
PTPRM-205ENST00000577827 CDC45O75419 566 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 TCP11L2Q8N4U5 519 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 LNPKQ9C0E8 428 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 CIZ1Q9ULV3 898 aaPredicted RBP12.73□□□□□ -0.37
PTPRM-205ENST00000577827 KIF3AQ9Y496 699 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 GRIN2BQ13224 1484 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 SLC4A10Q6U841 1118 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 PRDM2Q13029 1718 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 CCDC173Q0VFZ6 552 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 ERBINQ96RT1 1412 aa12.73□□□□□ -0.37
PTPRM-205ENST00000577827 PTPN23Q9H3S7 1636 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
PTPRM-205ENST00000577827 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 BIVM-ERCC5R4GMW8 1640 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 GNAI1P63096 354 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 TOPBP1Q92547 1522 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 NBPF1Q3BBV0 1214 aa12.72□□□□□ -0.37
PTPRM-205ENST00000577827 ABCA10Q8WWZ4 1543 aa12.71□□□□□ -0.37
PTPRM-205ENST00000577827 FAM13BQ9NYF5 915 aa12.71□□□□□ -0.38
PTPRM-205ENST00000577827 EPRSP07814 1512 aaKnown RBP12.71□□□□□ -0.38
PTPRM-205ENST00000577827 MCM4P33991 863 aa12.71□□□□□ -0.38
PTPRM-205ENST00000577827 NOL8Q76FK4 1167 aaKnown RBP12.71□□□□□ -0.38
PTPRM-205ENST00000577827 CCDC39Q9UFE4 941 aa12.71□□□□□ -0.38
PTPRM-205ENST00000577827 MBD3O95983 291 aa12.7□□□□□ -0.38
PTPRM-205ENST00000577827 SLFN5Q08AF3 891 aa12.7□□□□□ -0.38
PTPRM-205ENST00000577827 CHMP4CQ96CF2 233 aa12.7□□□□□ -0.38
PTPRM-205ENST00000577827 SOX12O15370 315 aa12.7□□□□□ -0.38
PTPRM-205ENST00000577827 BCAR3O75815 825 aa12.7□□□□□ -0.38
PTPRM-205ENST00000577827 GCC1Q96CN9 775 aa12.69□□□□□ -0.38
PTPRM-205ENST00000577827 DNMBPQ6XZF7 1577 aa12.69□□□□□ -0.38
PTPRM-205ENST00000577827 ELL2O00472 640 aaPredicted RBP12.69□□□□□ -0.38
PTPRM-205ENST00000577827 FOXD4L5Q5VV16 416 aaPredicted RBP12.69□□□□□ -0.38
PTPRM-205ENST00000577827 MCTP1Q6DN14 999 aa12.69□□□□□ -0.38
PTPRM-205ENST00000577827 FOXD4L4Q8WXT5 416 aaPredicted RBP12.69□□□□□ -0.38
PTPRM-205ENST00000577827 RABEP1Q15276 862 aa12.69□□□□□ -0.38
PTPRM-205ENST00000577827 GRPEL1Q9HAV7 217 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 CUL7Q14999 1698 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 RILPL2Q969X0 211 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 RRP9O43818 475 aaKnown RBP12.68□□□□□ -0.38
PTPRM-205ENST00000577827 MCM2P49736 904 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 MTHFSP49914 203 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.68□□□□□ -0.381e-7■■□□□ 14.3
PTPRM-205ENST00000577827 RUFY2Q8WXA3 655 aa12.68□□□□□ -0.38
PTPRM-205ENST00000577827 GNL2Q13823 731 aaKnown RBP12.67□□□□□ -0.38
PTPRM-205ENST00000577827 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
PTPRM-205ENST00000577827 COG3Q96JB2 828 aa12.67□□□□□ -0.38
PTPRM-205ENST00000577827 MVPQ14764 893 aaKnown RBP12.66□□□□□ -0.38
PTPRM-205ENST00000577827 ESPNB1AK53 854 aa12.66□□□□□ -0.38
PTPRM-205ENST00000577827 TPM3P06753 285 aa12.66□□□□□ -0.38
PTPRM-205ENST00000577827 CWC22Q9HCG8 908 aaKnown RBP12.66□□□□□ -0.38
PTPRM-205ENST00000577827 GOLGA6L19H0YKK7 550 aa12.66□□□□□ -0.38
PTPRM-205ENST00000577827 DIAPH3Q9NSV4 1193 aa12.65□□□□□ -0.38
PTPRM-205ENST00000577827 SYNJ2O15056 1496 aa12.65□□□□□ -0.38
PTPRM-205ENST00000577827 HMGN5P82970 282 aaKnown RBP12.65□□□□□ -0.39
PTPRM-205ENST00000577827 ABCC5O15440 1437 aa12.64□□□□□ -0.39
PTPRM-205ENST00000577827 R3HCC1Q9Y3T6 440 aaKnown RBP12.64□□□□□ -0.39
PTPRM-205ENST00000577827 ZNF428Q96B54 188 aa12.64□□□□□ -0.39
PTPRM-205ENST00000577827 PRG4Q92954 1404 aaPredicted RBP12.64□□□□□ -0.39
PTPRM-205ENST00000577827 LETM1O95202 739 aaPredicted RBP12.64□□□□□ -0.39
PTPRM-205ENST00000577827 HSP90B1P14625 803 aaKnown RBP12.64□□□□□ -0.39
PTPRM-205ENST00000577827 ZKSCAN1P17029 563 aaPredicted RBP12.64□□□□□ -0.39
PTPRM-205ENST00000577827 PLEKHG5O94827 1062 aa12.63□□□□□ -0.39
PTPRM-205ENST00000577827 K7ELQ4 463 aaPredicted RBP12.63□□□□□ -0.39
PTPRM-205ENST00000577827 EXOSC9Q06265 439 aaKnown RBP12.63□□□□□ -0.39
PTPRM-205ENST00000577827 ANO2Q9NQ90 1003 aa12.63□□□□□ -0.39
PTPRM-205ENST00000577827 ATF7IPQ6VMQ6 1270 aa12.63□□□□□ -0.39
PTPRM-205ENST00000577827 NKTRP30414 1462 aaKnown RBP12.63□□□□□ -0.39
PTPRM-205ENST00000577827 BECN2A8MW95 431 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms