RNA–Protein interactions for RNA: ENST00000576348.1

ERCC4-208, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 2

Gene ERCC4, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-208ENST00000576348 RIMS2Q9UQ26 1411 aa23.43■■□□□ 1.34
ERCC4-208ENST00000576348 PRAG1Q86YV5 1406 aa23.42■■□□□ 1.34
ERCC4-208ENST00000576348 EID1Q9Y6B2 187 aa23.41■■□□□ 1.34
ERCC4-208ENST00000576348 ADGRF5Q8IZF2 1346 aa23.4■■□□□ 1.34
ERCC4-208ENST00000576348 CEP170BQ9Y4F5 1589 aaPredicted RBP23.4■■□□□ 1.34
ERCC4-208ENST00000576348 TMEM2Q9UHN6 1383 aa23.4■■□□□ 1.34
ERCC4-208ENST00000576348 NEXMIFQ5QGS0 1516 aa23.38■■□□□ 1.33
ERCC4-208ENST00000576348 BCANQ96GW7 911 aa23.38■■□□□ 1.33
ERCC4-208ENST00000576348 KDM5AP29375 1690 aaKnown RBP23.37■■□□□ 1.33
ERCC4-208ENST00000576348 ZFYVE9O95405 1425 aa23.36■■□□□ 1.33
ERCC4-208ENST00000576348 ROCK2O75116 1388 aaKnown RBP23.36■■□□□ 1.33
ERCC4-208ENST00000576348 TXNDC2Q86VQ3 553 aa23.35■■□□□ 1.33
ERCC4-208ENST00000576348 UBR1Q8IWV7 1749 aa23.35■■□□□ 1.33
ERCC4-208ENST00000576348 SENP3Q9H4L4 574 aaPredicted RBP23.34■■□□□ 1.33
ERCC4-208ENST00000576348 RALGAPBQ86X10 1494 aa23.34■■□□□ 1.33
ERCC4-208ENST00000576348 CARD11Q9BXL7 1154 aa23.33■■□□□ 1.33
ERCC4-208ENST00000576348 PPLO60437 1756 aa23.32■■□□□ 1.32
ERCC4-208ENST00000576348 NRXN1Q9ULB1 1477 aa23.32■■□□□ 1.32
ERCC4-208ENST00000576348 PIK3C2GO75747 1445 aa23.31■■□□□ 1.32
ERCC4-208ENST00000576348 MYO5BQ9ULV0 1848 aa23.31■■□□□ 1.32
ERCC4-208ENST00000576348 IFT172Q9UG01 1749 aa23.3■■□□□ 1.32
ERCC4-208ENST00000576348 CFAP70Q5T0N1 1121 aa23.3■■□□□ 1.32
ERCC4-208ENST00000576348 ANKLE2Q86XL3 938 aa23.3■■□□□ 1.32
ERCC4-208ENST00000576348 SETD1BQ9UPS6 1966 aaKnown RBP23.3■■□□□ 1.32
ERCC4-208ENST00000576348 ZNF142P52746 1687 aaPredicted RBP23.29■■□□□ 1.32
ERCC4-208ENST00000576348 SLIT1O75093 1534 aa23.28■■□□□ 1.32
ERCC4-208ENST00000576348 LTKP29376 864 aa23.28■■□□□ 1.32
ERCC4-208ENST00000576348 NBPF1Q3BBV0 1214 aa23.28■■□□□ 1.32
ERCC4-208ENST00000576348 C14orf93Q9H972 538 aaKnown RBP23.28■■□□□ 1.32
ERCC4-208ENST00000576348 ARHGAP23Q9P227 1491 aa23.28■■□□□ 1.32
ERCC4-208ENST00000576348 EIF4G2P78344 907 aaKnown RBP eCLIP23.27■■□□□ 1.32
ERCC4-208ENST00000576348 SCAF11Q99590 1463 aaKnown RBP23.26■■□□□ 1.31
ERCC4-208ENST00000576348 PLEKHG1Q9ULL1 1385 aa23.25■■□□□ 1.31
ERCC4-208ENST00000576348 TRPM1Q7Z4N2 1603 aa23.24■■□□□ 1.31
ERCC4-208ENST00000576348 GPRASP1Q5JY77 1395 aa23.23■■□□□ 1.31
ERCC4-208ENST00000576348 USP47Q96K76 1375 aa23.21■■□□□ 1.31
ERCC4-208ENST00000576348 HSPA5P11021 654 aaKnown RBP23.2■■□□□ 1.3
ERCC4-208ENST00000576348 TMEM132EQ6IEE7 984 aa23.19■■□□□ 1.3
ERCC4-208ENST00000576348 KIAA1210Q9ULL0 1709 aa23.18■■□□□ 1.3
ERCC4-208ENST00000576348 LAMC1P11047 1609 aa23.18■■□□□ 1.3
ERCC4-208ENST00000576348 EIF3AQ14152 1382 aaKnown RBP23.17■■□□□ 1.3
ERCC4-208ENST00000576348 ZNF316A6NFI3 1004 aaPredicted RBP23.17■■□□□ 1.3
ERCC4-208ENST00000576348 HSPA2P54652 639 aa23.17■■□□□ 1.3
ERCC4-208ENST00000576348 ALKQ9UM73 1620 aa23.16■■□□□ 1.3
ERCC4-208ENST00000576348 SETBP1Q9Y6X0 1596 aa23.16■■□□□ 1.3
ERCC4-208ENST00000576348 SLC26A8Q96RN1 970 aa23.16■■□□□ 1.3
ERCC4-208ENST00000576348 NCKAP5LQ9HCH0 1330 aa23.15■■□□□ 1.3
ERCC4-208ENST00000576348 HIRIP3Q9BW71 556 aaPredicted RBP23.15■■□□□ 1.3
ERCC4-208ENST00000576348 STK26Q9P289 416 aa23.15■■□□□ 1.3
ERCC4-208ENST00000576348 LMTK3Q96Q04 1460 aa23.14■■□□□ 1.29
ERCC4-208ENST00000576348 TRAK1Q9UPV9 953 aa23.13■■□□□ 1.29
ERCC4-208ENST00000576348 NPHP4O75161 1426 aaPredicted RBP23.13■■□□□ 1.29
ERCC4-208ENST00000576348 TBX22Q9Y458 520 aa23.12■■□□□ 1.29
ERCC4-208ENST00000576348 ADAMTS13Q76LX8 1427 aa23.11■■□□□ 1.29
ERCC4-208ENST00000576348 ADGRB1O14514 1584 aa23.1■■□□□ 1.29
ERCC4-208ENST00000576348 ST20-MTHFSA0A0A6YYL1 179 aa23.1■■□□□ 1.29
ERCC4-208ENST00000576348 YTHDC2Q9H6S0 1430 aaKnown RBP23.09■■□□□ 1.29
ERCC4-208ENST00000576348 IQGAP1P46940 1657 aa23.09■■□□□ 1.29
ERCC4-208ENST00000576348 METP08581 1390 aa23.08■■□□□ 1.29
ERCC4-208ENST00000576348 LRPPRCP42704 1394 aaKnown RBP23.08■■□□□ 1.29
ERCC4-208ENST00000576348 NRXN3Q9Y4C0 1643 aa23.08■■□□□ 1.28
ERCC4-208ENST00000576348 DIP2AQ14689 1571 aa23.07■■□□□ 1.28
ERCC4-208ENST00000576348 AEBP2Q6ZN18 517 aaPredicted RBP23.06■■□□□ 1.28
ERCC4-208ENST00000576348 POGKQ9P215 609 aa23.06■■□□□ 1.28
ERCC4-208ENST00000576348 ASXL1Q8IXJ9 1541 aa23.06■■□□□ 1.28
ERCC4-208ENST00000576348 CENPJQ9HC77 1338 aaPredicted RBP23.06■■□□□ 1.28
ERCC4-208ENST00000576348 MED14O60244 1454 aa23.05■■□□□ 1.28
ERCC4-208ENST00000576348 ABCC11Q96J66 1382 aa23.02■■□□□ 1.28
ERCC4-208ENST00000576348 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
ERCC4-208ENST00000576348 POLR1AO95602 1720 aaPredicted RBP23.02■■□□□ 1.28
ERCC4-208ENST00000576348 SLC24A1O60721 1099 aa23.01■■□□□ 1.27
ERCC4-208ENST00000576348 TMF1P82094 1093 aa23■■□□□ 1.27
ERCC4-208ENST00000576348 PRAM1Q96QH2 718 aa23■■□□□ 1.27
ERCC4-208ENST00000576348 AMOTL2Q9Y2J4 779 aa23■■□□□ 1.27
ERCC4-208ENST00000576348 SAFB2Q14151 953 aaKnown RBP eCLIP22.99■■□□□ 1.27
ERCC4-208ENST00000576348 POLR3GLQ9BT43 218 aa22.99■■□□□ 1.27
ERCC4-208ENST00000576348 SETD1AO15047 1707 aaKnown RBP22.98■■□□□ 1.27
ERCC4-208ENST00000576348 DLC1Q96QB1 1528 aa22.97■■□□□ 1.27
ERCC4-208ENST00000576348 SIRT1Q96EB6 747 aa22.96■■□□□ 1.27
ERCC4-208ENST00000576348 DMRT2Q9Y5R5 561 aa22.96■■□□□ 1.27
ERCC4-208ENST00000576348 TECPR2O15040 1411 aa22.95■■□□□ 1.26
ERCC4-208ENST00000576348 CDCA8Q53HL2 280 aa22.95■■□□□ 1.26
ERCC4-208ENST00000576348 PTPRUQ92729 1446 aa22.95■■□□□ 1.26
ERCC4-208ENST00000576348 TESK2Q96S53 571 aa22.95■■□□□ 1.26
ERCC4-208ENST00000576348 FAM135BQ49AJ0 1406 aa22.93■■□□□ 1.26
ERCC4-208ENST00000576348 WAPLQ7Z5K2 1190 aa22.93■■□□□ 1.26
ERCC4-208ENST00000576348 MINK1Q8N4C8 1332 aaPredicted RBP22.92■■□□□ 1.26
ERCC4-208ENST00000576348 KCNA6P17658 529 aa22.92■■□□□ 1.26
ERCC4-208ENST00000576348 SBNO2Q9Y2G9 1366 aa22.91■■□□□ 1.26
ERCC4-208ENST00000576348 ROBO2Q9HCK4 1378 aa22.9■■□□□ 1.26
ERCC4-208ENST00000576348 KIF7Q2M1P5 1343 aa22.9■■□□□ 1.26
ERCC4-208ENST00000576348 CPS1P31327 1500 aa22.9■■□□□ 1.26
ERCC4-208ENST00000576348 PTCH1Q13635 1447 aa22.9■■□□□ 1.26
ERCC4-208ENST00000576348 CCDC7Q96M83 1385 aa22.89■■□□□ 1.26
ERCC4-208ENST00000576348 PLEKHH1Q9ULM0 1364 aa22.89■■□□□ 1.26
ERCC4-208ENST00000576348 EVC2Q86UK5 1308 aa22.89■■□□□ 1.26
ERCC4-208ENST00000576348 ARHGEF28Q8N1W1 1705 aaKnown RBP22.89■■□□□ 1.26
ERCC4-208ENST00000576348 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
ERCC4-208ENST00000576348 C11orf95C9JLR9 678 aaPredicted RBP22.88■■□□□ 1.25
ERCC4-208ENST00000576348 KNDC1Q76NI1 1749 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms