RNA–Protein interactions for RNA: ENST00000575711.1

RPAIN-217, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-217ENST00000575711 SCAF11Q99590 1463 aaKnown RBP20.35■□□□□ 0.85
RPAIN-217ENST00000575711 ZFYVE9O95405 1425 aa20.35■□□□□ 0.85
RPAIN-217ENST00000575711 NEURL4Q96JN8 1562 aa20.34■□□□□ 0.85
RPAIN-217ENST00000575711 RGL3Q3MIN7 710 aa20.34■□□□□ 0.85
RPAIN-217ENST00000575711 PPP1R15AO75807 674 aaPredicted RBP20.33■□□□□ 0.85
RPAIN-217ENST00000575711 LTKP29376 864 aa20.33■□□□□ 0.85
RPAIN-217ENST00000575711 RPGRIP1LQ68CZ1 1315 aa20.32■□□□□ 0.84
RPAIN-217ENST00000575711 POLR1AO95602 1720 aaPredicted RBP20.31■□□□□ 0.84
RPAIN-217ENST00000575711 DMRT2Q9Y5R5 561 aa20.31■□□□□ 0.84
RPAIN-217ENST00000575711 STRCQ7RTU9 1775 aa20.31■□□□□ 0.84
RPAIN-217ENST00000575711 NUTM2DQ5VT03 806 aaPredicted RBP20.3■□□□□ 0.84
RPAIN-217ENST00000575711 CCER1Q8TC90 406 aaPredicted RBP20.3■□□□□ 0.84
RPAIN-217ENST00000575711 SIN3AQ96ST3 1273 aa20.3■□□□□ 0.84
RPAIN-217ENST00000575711 NPHP4O75161 1426 aaPredicted RBP20.29■□□□□ 0.84
RPAIN-217ENST00000575711 NEXMIFQ5QGS0 1516 aa20.29■□□□□ 0.84
RPAIN-217ENST00000575711 NEUROD1Q13562 356 aa20.29■□□□□ 0.84
RPAIN-217ENST00000575711 MED14O60244 1454 aa20.29■□□□□ 0.84
RPAIN-217ENST00000575711 CLSPNQ9HAW4 1339 aa20.28■□□□□ 0.84
RPAIN-217ENST00000575711 VGFO15240 615 aaPredicted RBP20.27■□□□□ 0.84
RPAIN-217ENST00000575711 PLEKHG1Q9ULL1 1385 aa20.26■□□□□ 0.83
RPAIN-217ENST00000575711 BCANQ96GW7 911 aa20.26■□□□□ 0.83
RPAIN-217ENST00000575711 IQGAP1P46940 1657 aa20.24■□□□□ 0.83
RPAIN-217ENST00000575711 PPLO60437 1756 aa20.23■□□□□ 0.83
RPAIN-217ENST00000575711 DCAF11Q8TEB1 546 aa20.21■□□□□ 0.83
RPAIN-217ENST00000575711 STAC3Q96MF2 364 aa20.21■□□□□ 0.83
RPAIN-217ENST00000575711 MYOM2P54296 1465 aa20.2■□□□□ 0.82
RPAIN-217ENST00000575711 IFT172Q9UG01 1749 aa20.2■□□□□ 0.82
RPAIN-217ENST00000575711 KDM2AQ9Y2K7 1162 aa20.19■□□□□ 0.82
RPAIN-217ENST00000575711 ADGRF5Q8IZF2 1346 aa20.19■□□□□ 0.82
RPAIN-217ENST00000575711 TONSLQ96HA7 1378 aa20.19■□□□□ 0.82
RPAIN-217ENST00000575711 SLC26A8Q96RN1 970 aa20.18■□□□□ 0.82
RPAIN-217ENST00000575711 SETBP1Q9Y6X0 1596 aa20.17■□□□□ 0.82
RPAIN-217ENST00000575711 L3MBTL2Q969R5 705 aa20.17■□□□□ 0.82
RPAIN-217ENST00000575711 ADAMTS13Q76LX8 1427 aa20.16■□□□□ 0.82
RPAIN-217ENST00000575711 TBX22Q9Y458 520 aa20.15■□□□□ 0.82
RPAIN-217ENST00000575711 DIP2AQ14689 1571 aa20.15■□□□□ 0.82
RPAIN-217ENST00000575711 NRXN1Q9ULB1 1477 aa20.14■□□□□ 0.81
RPAIN-217ENST00000575711 PIK3C2GO75747 1445 aa20.14■□□□□ 0.81
RPAIN-217ENST00000575711 NRXN3Q9Y4C0 1643 aa20.13■□□□□ 0.81
RPAIN-217ENST00000575711 ALKQ9UM73 1620 aa20.1■□□□□ 0.81
RPAIN-217ENST00000575711 PIK3R4Q99570 1358 aa20.09■□□□□ 0.81
RPAIN-217ENST00000575711 ZNF335Q9H4Z2 1342 aaPredicted RBP20.09■□□□□ 0.81
RPAIN-217ENST00000575711 TIMELESSQ9UNS1 1208 aa20.09■□□□□ 0.81
RPAIN-217ENST00000575711 C14orf93Q9H972 538 aaKnown RBP20.07■□□□□ 0.8
RPAIN-217ENST00000575711 PRAG1Q86YV5 1406 aa20.07■□□□□ 0.8
RPAIN-217ENST00000575711 METP08581 1390 aa20.07■□□□□ 0.8
RPAIN-217ENST00000575711 KCNA6P17658 529 aa20.06■□□□□ 0.8
RPAIN-217ENST00000575711 CFAP70Q5T0N1 1121 aa20.06■□□□□ 0.8
RPAIN-217ENST00000575711 LAMC1P11047 1609 aa20.05■□□□□ 0.8
RPAIN-217ENST00000575711 SETD1AO15047 1707 aaKnown RBP20.04■□□□□ 0.8
RPAIN-217ENST00000575711 AMOTL2Q9Y2J4 779 aa20.02■□□□□ 0.8
RPAIN-217ENST00000575711 NWD1Q149M9 1564 aa20.02■□□□□ 0.8
RPAIN-217ENST00000575711 CPS1P31327 1500 aa20.02■□□□□ 0.79
RPAIN-217ENST00000575711 PTPRUQ92729 1446 aa20.02■□□□□ 0.79
RPAIN-217ENST00000575711 TMEM132EQ6IEE7 984 aa20.01■□□□□ 0.79
RPAIN-217ENST00000575711 LTBP4Q8N2S1 1624 aa20■□□□□ 0.79
RPAIN-217ENST00000575711 NKTRP30414 1462 aaKnown RBP19.99■□□□□ 0.79
RPAIN-217ENST00000575711 ASXL1Q8IXJ9 1541 aa19.99■□□□□ 0.79
RPAIN-217ENST00000575711 CHD2O14647 1828 aaKnown RBP19.99■□□□□ 0.79
RPAIN-217ENST00000575711 NBPF8Q3BBV2 869 aa19.98■□□□□ 0.79
RPAIN-217ENST00000575711 KIAA1210Q9ULL0 1709 aa19.98■□□□□ 0.79
RPAIN-217ENST00000575711 LRPPRCP42704 1394 aaKnown RBP19.97■□□□□ 0.79
RPAIN-217ENST00000575711 YTHDC2Q9H6S0 1430 aaKnown RBP19.97■□□□□ 0.79
RPAIN-217ENST00000575711 STK26Q9P289 416 aa19.97■□□□□ 0.79
RPAIN-217ENST00000575711 STRCP1A6NGW2 1772 aa19.97■□□□□ 0.79
RPAIN-217ENST00000575711 XRN1Q8IZH2 1706 aaKnown RBP19.96■□□□□ 0.79
RPAIN-217ENST00000575711 ADGRB1O14514 1584 aa19.96■□□□□ 0.79
RPAIN-217ENST00000575711 NBPF1Q3BBV0 1214 aa19.95■□□□□ 0.78
RPAIN-217ENST00000575711 PROSER2Q86WR7 435 aaPredicted RBP19.95■□□□□ 0.78
RPAIN-217ENST00000575711 ABCC11Q96J66 1382 aa19.95■□□□□ 0.78
RPAIN-217ENST00000575711 LRRC7Q96NW7 1537 aa19.94■□□□□ 0.78
RPAIN-217ENST00000575711 TRPM1Q7Z4N2 1603 aa19.94■□□□□ 0.78
RPAIN-217ENST00000575711 ROCK2O75116 1388 aaKnown RBP19.94■□□□□ 0.78
RPAIN-217ENST00000575711 PTCH1Q13635 1447 aa19.93■□□□□ 0.78
RPAIN-217ENST00000575711 TECPR2O15040 1411 aa19.93■□□□□ 0.78
RPAIN-217ENST00000575711 TMEM94Q12767 1356 aa19.92■□□□□ 0.78
RPAIN-217ENST00000575711 RALGAPBQ86X10 1494 aa19.92■□□□□ 0.78
RPAIN-217ENST00000575711 CERKQ8TCT0 537 aa19.91■□□□□ 0.78
RPAIN-217ENST00000575711 TRAK1Q9UPV9 953 aa19.91■□□□□ 0.78
RPAIN-217ENST00000575711 ROBO2Q9HCK4 1378 aa19.91■□□□□ 0.78
RPAIN-217ENST00000575711 POTEDQ86YR6 584 aa19.9■□□□□ 0.78
RPAIN-217ENST00000575711 RBM33Q96EV2 1170 aaKnown RBP19.9■□□□□ 0.78
RPAIN-217ENST00000575711 KNDC1Q76NI1 1749 aa19.9■□□□□ 0.78
RPAIN-217ENST00000575711 SIRT1Q96EB6 747 aa19.89■□□□□ 0.77
RPAIN-217ENST00000575711 DLC1Q96QB1 1528 aa19.88■□□□□ 0.77
RPAIN-217ENST00000575711 NCOA3Q9Y6Q9 1424 aa19.88■□□□□ 0.77
RPAIN-217ENST00000575711 GPRASP1Q5JY77 1395 aa19.88■□□□□ 0.77
RPAIN-217ENST00000575711 C14orf37Q86TY3 774 aa19.88■□□□□ 0.77
RPAIN-217ENST00000575711 IQSEC2Q5JU85 1478 aa19.87■□□□□ 0.77
RPAIN-217ENST00000575711 FAM135BQ49AJ0 1406 aa19.87■□□□□ 0.77
RPAIN-217ENST00000575711 CARD11Q9BXL7 1154 aa19.87■□□□□ 0.77
RPAIN-217ENST00000575711 POGKQ9P215 609 aa19.86■□□□□ 0.77
RPAIN-217ENST00000575711 WAPLQ7Z5K2 1190 aa19.85■□□□□ 0.77
RPAIN-217ENST00000575711 PRAM1Q96QH2 718 aa19.85■□□□□ 0.77
RPAIN-217ENST00000575711 MSH6P52701 1360 aa19.83■□□□□ 0.77
RPAIN-217ENST00000575711 PLEKHH1Q9ULM0 1364 aa19.83■□□□□ 0.77
RPAIN-217ENST00000575711 EIF3AQ14152 1382 aaKnown RBP19.82■□□□□ 0.76
RPAIN-217ENST00000575711 SAFB2Q14151 953 aaKnown RBP eCLIP19.81■□□□□ 0.76
RPAIN-217ENST00000575711 C19orf44Q9H6X5 657 aa19.81■□□□□ 0.76
RPAIN-217ENST00000575711 ADGRL3Q9HAR2 1447 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms