RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 PLEKHG1Q9ULL1 1385 aa14.02□□□□□ -0.17
SMG6-218ENST00000575454 SPATA31A6Q5VVP1 1343 aa14.02□□□□□ -0.17
SMG6-218ENST00000575454 C14orf37Q86TY3 774 aa14.02□□□□□ -0.17
SMG6-218ENST00000575454 TET3O43151 1660 aa14.01□□□□□ -0.17
SMG6-218ENST00000575454 MEX3CQ5U5Q3 659 aaKnown RBP14.01□□□□□ -0.17
SMG6-218ENST00000575454 CADPS2Q86UW7 1296 aa14.01□□□□□ -0.17
SMG6-218ENST00000575454 FGD6Q6ZV73 1430 aa14□□□□□ -0.17
SMG6-218ENST00000575454 C19orf44Q9H6X5 657 aa14□□□□□ -0.17
SMG6-218ENST00000575454 ATF3P18847 181 aa13.99□□□□□ -0.17
SMG6-218ENST00000575454 PIK3C2BO00750 1634 aa13.99□□□□□ -0.17
SMG6-218ENST00000575454 RPRD2Q5VT52 1461 aaKnown RBP13.99□□□□□ -0.17
SMG6-218ENST00000575454 KDM5AP29375 1690 aaKnown RBP13.98□□□□□ -0.17
SMG6-218ENST00000575454 ADGRB3O60242 1522 aa13.97□□□□□ -0.17
SMG6-218ENST00000575454 CEP152O94986 1710 aa13.97□□□□□ -0.17
SMG6-218ENST00000575454 ZFYVE9O95405 1425 aa13.97□□□□□ -0.17
SMG6-218ENST00000575454 RIMS2Q9UQ26 1411 aa13.97□□□□□ -0.17
SMG6-218ENST00000575454 XIRP1Q702N8 1843 aaKnown RBP13.97□□□□□ -0.17
SMG6-218ENST00000575454 PIK3R4Q99570 1358 aa13.96□□□□□ -0.17
SMG6-218ENST00000575454 ROBO1Q9Y6N7 1651 aa13.96□□□□□ -0.17
SMG6-218ENST00000575454 ANKRD50Q9ULJ7 1429 aa13.96□□□□□ -0.18
SMG6-218ENST00000575454 NWD1Q149M9 1564 aa13.96□□□□□ -0.18
SMG6-218ENST00000575454 CHGAP10645 457 aaKnown RBP13.95□□□□□ -0.18
SMG6-218ENST00000575454 RXRBP28702 533 aa13.95□□□□□ -0.18
SMG6-218ENST00000575454 UPF1Q92900 1129 aaKnown RBP eCLIP13.95□□□□□ -0.187e-6■■■■□ 22.8
SMG6-218ENST00000575454 PTPN23Q9H3S7 1636 aa13.94□□□□□ -0.18
SMG6-218ENST00000575454 FAM50AQ14320 339 aaKnown RBP13.94□□□□□ -0.18
SMG6-218ENST00000575454 ADGRL2O95490 1459 aa13.93□□□□□ -0.18
SMG6-218ENST00000575454 TRIM52Q96A61 297 aa13.92□□□□□ -0.18
SMG6-218ENST00000575454 AMOTL2Q9Y2J4 779 aa13.91□□□□□ -0.18
SMG6-218ENST00000575454 BRINP3Q76B58 766 aa13.9□□□□□ -0.18
SMG6-218ENST00000575454 NUTM2DQ5VT03 806 aaPredicted RBP13.89□□□□□ -0.19
SMG6-218ENST00000575454 ADAMTS13Q76LX8 1427 aa13.89□□□□□ -0.19
SMG6-218ENST00000575454 NUTM2BA6NNL0 878 aaPredicted RBP13.88□□□□□ -0.19
SMG6-218ENST00000575454 NUTM2EB1AL46 878 aaPredicted RBP13.88□□□□□ -0.19
SMG6-218ENST00000575454 NUTM2AQ8IVF1 878 aaPredicted RBP13.88□□□□□ -0.19
SMG6-218ENST00000575454 LRRC59Q96AG4 307 aaKnown RBP13.88□□□□□ -0.19
SMG6-218ENST00000575454 CROCC2H7BZ55 1655 aa13.87□□□□□ -0.19
SMG6-218ENST00000575454 LRP6O75581 1613 aa13.86□□□□□ -0.19
SMG6-218ENST00000575454 DCCP43146 1447 aa13.86□□□□□ -0.19
SMG6-218ENST00000575454 CFAP65Q6ZU64 1925 aaKnown RBP13.86□□□□□ -0.19
SMG6-218ENST00000575454 PHLPP1O60346 1717 aa13.85□□□□□ -0.19
SMG6-218ENST00000575454 CDK12Q9NYV4 1490 aaPredicted RBP13.85□□□□□ -0.19
SMG6-218ENST00000575454 AFF2P51816 1311 aa13.85□□□□□ -0.19
SMG6-218ENST00000575454 COL16A1Q07092 1604 aaPredicted RBP13.84□□□□□ -0.19
SMG6-218ENST00000575454 AHDC1Q5TGY3 1603 aaPredicted RBP13.84□□□□□ -0.19
SMG6-218ENST00000575454 DIP2AQ14689 1571 aa13.83□□□□□ -0.19
SMG6-218ENST00000575454 SETD5Q9C0A6 1442 aa13.83□□□□□ -0.2
SMG6-218ENST00000575454 RBM6P78332 1123 aaKnown RBP13.83□□□□□ -0.2
SMG6-218ENST00000575454 NUP155O75694 1391 aa13.83□□□□□ -0.2
SMG6-218ENST00000575454 ROCK1Q13464 1354 aa13.83□□□□□ -0.2
SMG6-218ENST00000575454 FOXD1Q16676 465 aa13.82□□□□□ -0.2
SMG6-218ENST00000575454 QTRT2Q9H974 415 aaKnown RBP13.82□□□□□ -0.2
SMG6-218ENST00000575454 ZNF326Q5BKZ1 582 aaKnown RBP13.81□□□□□ -0.2
SMG6-218ENST00000575454 NGLY1Q96IV0 654 aa13.81□□□□□ -0.2
SMG6-218ENST00000575454 C8orf37Q96NL8 207 aa13.81□□□□□ -0.2
SMG6-218ENST00000575454 TMEM131LA2VDJ0 1609 aa13.81□□□□□ -0.2
SMG6-218ENST00000575454 TRPM2O94759 1503 aa13.8□□□□□ -0.2
SMG6-218ENST00000575454 PTPRUQ92729 1446 aa13.8□□□□□ -0.2
SMG6-218ENST00000575454 MST1RQ04912 1400 aa13.78□□□□□ -0.2
SMG6-218ENST00000575454 ASXL1Q8IXJ9 1541 aa13.77□□□□□ -0.21
SMG6-218ENST00000575454 CHD2O14647 1828 aaKnown RBP13.76□□□□□ -0.21
SMG6-218ENST00000575454 PNPLA6Q8IY17 1366 aa13.76□□□□□ -0.21
SMG6-218ENST00000575454 METP08581 1390 aa13.75□□□□□ -0.21
SMG6-218ENST00000575454 ADGRL3Q9HAR2 1447 aa13.74□□□□□ -0.21
SMG6-218ENST00000575454 ATAD2Q6PL18 1390 aa13.74□□□□□ -0.21
SMG6-218ENST00000575454 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.74□□□□□ -0.21
SMG6-218ENST00000575454 ADAMTS2O95450 1211 aa13.74□□□□□ -0.21
SMG6-218ENST00000575454 TRPC5Q9UL62 973 aaPredicted RBP13.74□□□□□ -0.21
SMG6-218ENST00000575454 SHPRHQ149N8 1683 aa13.74□□□□□ -0.21
SMG6-218ENST00000575454 DDX17Q92841 729 aaKnown RBP13.73□□□□□ -0.21
SMG6-218ENST00000575454 USP21Q9UK80 565 aa13.73□□□□□ -0.21
SMG6-218ENST00000575454 UNC13BO14795 1591 aa13.73□□□□□ -0.21
SMG6-218ENST00000575454 RGS12O14924 1447 aa13.73□□□□□ -0.21
SMG6-218ENST00000575454 EP400Q96L91 3159 aa13.72□□□□□ -0.21
SMG6-218ENST00000575454 SETBP1Q9Y6X0 1596 aa13.71□□□□□ -0.21
SMG6-218ENST00000575454 SOS2Q07890 1332 aaPredicted RBP13.71□□□□□ -0.21
SMG6-218ENST00000575454 VGFO15240 615 aaPredicted RBP13.71□□□□□ -0.21
SMG6-218ENST00000575454 ITGAEP38570 1179 aa13.71□□□□□ -0.21
SMG6-218ENST00000575454 CCDC125Q86Z20 511 aa13.71□□□□□ -0.21
SMG6-218ENST00000575454 FNBP4Q8N3X1 1017 aaPredicted RBP13.71□□□□□ -0.21
SMG6-218ENST00000575454 ZRANB1Q9UGI0 708 aa13.71□□□□□ -0.21
SMG6-218ENST00000575454 GCC2Q8IWJ2 1684 aa13.71□□□□□ -0.21
SMG6-218ENST00000575454 C1orf167Q5SNV9 1468 aa13.7□□□□□ -0.22
SMG6-218ENST00000575454 PTCH1Q13635 1447 aa13.68□□□□□ -0.22
SMG6-218ENST00000575454 ORAI2Q96SN7 254 aa13.68□□□□□ -0.22
SMG6-218ENST00000575454 IQGAP3Q86VI3 1631 aa13.68□□□□□ -0.22
SMG6-218ENST00000575454 RPGRIP1LQ68CZ1 1315 aa13.67□□□□□ -0.22
SMG6-218ENST00000575454 E9PCH4 1651 aa13.66□□□□□ -0.22
SMG6-218ENST00000575454 NPHP3Q7Z494 1330 aa13.65□□□□□ -0.22
SMG6-218ENST00000575454 XRN1Q8IZH2 1706 aaKnown RBP13.64□□□□□ -0.23
SMG6-218ENST00000575454 ROBO2Q9HCK4 1378 aa13.64□□□□□ -0.23
SMG6-218ENST00000575454 HFM1A2PYH4 1435 aa13.64□□□□□ -0.23
SMG6-218ENST00000575454 LRPPRCP42704 1394 aaKnown RBP13.63□□□□□ -0.23
SMG6-218ENST00000575454 ESCO1Q5FWF5 840 aa13.63□□□□□ -0.23
SMG6-218ENST00000575454 ATRNO75882 1429 aa13.62□□□□□ -0.23
SMG6-218ENST00000575454 PRAG1Q86YV5 1406 aa13.62□□□□□ -0.23
SMG6-218ENST00000575454 NHSL1Q5SYE7 1610 aa13.61□□□□□ -0.23
SMG6-218ENST00000575454 NRXN3Q9Y4C0 1643 aa13.61□□□□□ -0.23
SMG6-218ENST00000575454 GJD4Q96KN9 370 aaPredicted RBP13.61□□□□□ -0.23
SMG6-218ENST00000575454 MYO5BQ9ULV0 1848 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms