RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SIN3AQ96ST3 1273 aa26.46■■□□□ 1.83
CCDC40-213ENST00000574933 SCAF11Q99590 1463 aaKnown RBP26.46■■□□□ 1.83
CCDC40-213ENST00000574933 MED14O60244 1454 aa26.45■■□□□ 1.82
CCDC40-213ENST00000574933 HDGFP51858 240 aaKnown RBP26.44■■□□□ 1.82
CCDC40-213ENST00000574933 ANKLE2Q86XL3 938 aa26.44■■□□□ 1.82
CCDC40-213ENST00000574933 LTKP29376 864 aa26.43■■□□□ 1.82
CCDC40-213ENST00000574933 ZNF326Q5BKZ1 582 aaKnown RBP26.43■■□□□ 1.82
CCDC40-213ENST00000574933 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.43■■□□□ 1.82
CCDC40-213ENST00000574933 CCER1Q8TC90 406 aaPredicted RBP26.43■■□□□ 1.82
CCDC40-213ENST00000574933 TXNDC2Q86VQ3 553 aa26.41■■□□□ 1.82
CCDC40-213ENST00000574933 EID1Q9Y6B2 187 aa26.41■■□□□ 1.82
CCDC40-213ENST00000574933 RGL3Q3MIN7 710 aa26.4■■□□□ 1.82
CCDC40-213ENST00000574933 IQGAP1P46940 1657 aa26.4■■□□□ 1.82
CCDC40-213ENST00000574933 MYOM2P54296 1465 aa26.38■■□□□ 1.81
CCDC40-213ENST00000574933 STAC3Q96MF2 364 aa26.38■■□□□ 1.81
CCDC40-213ENST00000574933 NCKAP5LQ9HCH0 1330 aa26.37■■□□□ 1.81
CCDC40-213ENST00000574933 PLEKHG1Q9ULL1 1385 aa26.36■■□□□ 1.81
CCDC40-213ENST00000574933 NEUROD1Q13562 356 aa26.36■■□□□ 1.81
CCDC40-213ENST00000574933 VGFO15240 615 aaPredicted RBP26.35■■□□□ 1.81
CCDC40-213ENST00000574933 NPHP4O75161 1426 aaPredicted RBP26.35■■□□□ 1.81
CCDC40-213ENST00000574933 NRXN1Q9ULB1 1477 aa26.35■■□□□ 1.81
CCDC40-213ENST00000574933 SETBP1Q9Y6X0 1596 aa26.34■■□□□ 1.81
CCDC40-213ENST00000574933 NRXN3Q9Y4C0 1643 aa26.34■■□□□ 1.81
CCDC40-213ENST00000574933 PPP1R15AO75807 674 aaPredicted RBP26.31■■□□□ 1.8
CCDC40-213ENST00000574933 L3MBTL2Q969R5 705 aa26.3■■□□□ 1.8
CCDC40-213ENST00000574933 DMRT2Q9Y5R5 561 aa26.3■■□□□ 1.8
CCDC40-213ENST00000574933 SETD1AO15047 1707 aaKnown RBP26.3■■□□□ 1.8
CCDC40-213ENST00000574933 DIP2AQ14689 1571 aa26.29■■□□□ 1.8
CCDC40-213ENST00000574933 NUTM2DQ5VT03 806 aaPredicted RBP26.29■■□□□ 1.8
CCDC40-213ENST00000574933 TIMELESSQ9UNS1 1208 aa26.29■■□□□ 1.8
CCDC40-213ENST00000574933 DCAF11Q8TEB1 546 aa26.28■■□□□ 1.8
CCDC40-213ENST00000574933 ADGRF5Q8IZF2 1346 aa26.28■■□□□ 1.8
CCDC40-213ENST00000574933 TONSLQ96HA7 1378 aa26.27■■□□□ 1.8
CCDC40-213ENST00000574933 PIK3C2GO75747 1445 aa26.27■■□□□ 1.8
CCDC40-213ENST00000574933 ADAMTS13Q76LX8 1427 aa26.27■■□□□ 1.8
CCDC40-213ENST00000574933 LAMC1P11047 1609 aa26.25■■□□□ 1.79
CCDC40-213ENST00000574933 KIAA1210Q9ULL0 1709 aa26.24■■□□□ 1.79
CCDC40-213ENST00000574933 ALKQ9UM73 1620 aa26.24■■□□□ 1.79
CCDC40-213ENST00000574933 TBX22Q9Y458 520 aa26.22■■□□□ 1.79
CCDC40-213ENST00000574933 CHD2O14647 1828 aaKnown RBP26.22■■□□□ 1.79
CCDC40-213ENST00000574933 KDM2AQ9Y2K7 1162 aa26.21■■□□□ 1.79
CCDC40-213ENST00000574933 PRAG1Q86YV5 1406 aa26.21■■□□□ 1.79
CCDC40-213ENST00000574933 PIK3R4Q99570 1358 aa26.18■■□□□ 1.78
CCDC40-213ENST00000574933 C14orf93Q9H972 538 aaKnown RBP26.17■■□□□ 1.78
CCDC40-213ENST00000574933 TRPM1Q7Z4N2 1603 aa26.15■■□□□ 1.78
CCDC40-213ENST00000574933 BCANQ96GW7 911 aa26.15■■□□□ 1.78
CCDC40-213ENST00000574933 SLC26A8Q96RN1 970 aa26.15■■□□□ 1.78
CCDC40-213ENST00000574933 STRCP1A6NGW2 1772 aa26.14■■□□□ 1.78
CCDC40-213ENST00000574933 NWD1Q149M9 1564 aa26.13■■□□□ 1.77
CCDC40-213ENST00000574933 ASXL1Q8IXJ9 1541 aa26.13■■□□□ 1.77
CCDC40-213ENST00000574933 XRN1Q8IZH2 1706 aaKnown RBP26.11■■□□□ 1.77
CCDC40-213ENST00000574933 METP08581 1390 aa26.1■■□□□ 1.77
CCDC40-213ENST00000574933 ADGRB1O14514 1584 aa26.1■■□□□ 1.77
CCDC40-213ENST00000574933 CFAP70Q5T0N1 1121 aa26.09■■□□□ 1.77
CCDC40-213ENST00000574933 SENP3Q9H4L4 574 aaPredicted RBP26.09■■□□□ 1.77
CCDC40-213ENST00000574933 KNDC1Q76NI1 1749 aa26.08■■□□□ 1.77
CCDC40-213ENST00000574933 NBPF8Q3BBV2 869 aa26.08■■□□□ 1.77
CCDC40-213ENST00000574933 PTPRUQ92729 1446 aa26.06■■□□□ 1.76
CCDC40-213ENST00000574933 KCNA6P17658 529 aa26.06■■□□□ 1.76
CCDC40-213ENST00000574933 LTBP4Q8N2S1 1624 aa26.05■■□□□ 1.76
CCDC40-213ENST00000574933 RALGAPBQ86X10 1494 aa26.04■■□□□ 1.76
CCDC40-213ENST00000574933 ZNF335Q9H4Z2 1342 aaPredicted RBP26.03■■□□□ 1.76
CCDC40-213ENST00000574933 NKTRP30414 1462 aaKnown RBP26.03■■□□□ 1.76
CCDC40-213ENST00000574933 LRPPRCP42704 1394 aaKnown RBP26.02■■□□□ 1.76
CCDC40-213ENST00000574933 TECPR2O15040 1411 aa26.02■■□□□ 1.76
CCDC40-213ENST00000574933 CPS1P31327 1500 aa26.02■■□□□ 1.76
CCDC40-213ENST00000574933 GPRASP1Q5JY77 1395 aa26.01■■□□□ 1.75
CCDC40-213ENST00000574933 YTHDC2Q9H6S0 1430 aaKnown RBP26.01■■□□□ 1.75
CCDC40-213ENST00000574933 ABCC11Q96J66 1382 aa26■■□□□ 1.75
CCDC40-213ENST00000574933 TMEM132EQ6IEE7 984 aa25.99■■□□□ 1.75
CCDC40-213ENST00000574933 AMOTL2Q9Y2J4 779 aa25.99■■□□□ 1.75
CCDC40-213ENST00000574933 XIRP1Q702N8 1843 aaKnown RBP25.98■■□□□ 1.75
CCDC40-213ENST00000574933 NBPF1Q3BBV0 1214 aa25.98■■□□□ 1.75
CCDC40-213ENST00000574933 DLC1Q96QB1 1528 aa25.98■■□□□ 1.75
CCDC40-213ENST00000574933 PTCH1Q13635 1447 aa25.97■■□□□ 1.75
CCDC40-213ENST00000574933 ARHGEF28Q8N1W1 1705 aaKnown RBP25.97■■□□□ 1.75
CCDC40-213ENST00000574933 SIRT1Q96EB6 747 aa25.94■■□□□ 1.74
CCDC40-213ENST00000574933 ROCK2O75116 1388 aaKnown RBP25.94■■□□□ 1.74
CCDC40-213ENST00000574933 LRRC7Q96NW7 1537 aa25.93■■□□□ 1.74
CCDC40-213ENST00000574933 FAM135BQ49AJ0 1406 aa25.91■■□□□ 1.74
CCDC40-213ENST00000574933 NCOA3Q9Y6Q9 1424 aa25.9■■□□□ 1.74
CCDC40-213ENST00000574933 ROBO2Q9HCK4 1378 aa25.9■■□□□ 1.74
CCDC40-213ENST00000574933 STK26Q9P289 416 aa25.88■■□□□ 1.73
CCDC40-213ENST00000574933 IQSEC2Q5JU85 1478 aa25.86■■□□□ 1.73
CCDC40-213ENST00000574933 PROSER2Q86WR7 435 aaPredicted RBP25.86■■□□□ 1.73
CCDC40-213ENST00000574933 CARD11Q9BXL7 1154 aa25.84■■□□□ 1.73
CCDC40-213ENST00000574933 TRAK1Q9UPV9 953 aa25.84■■□□□ 1.73
CCDC40-213ENST00000574933 TMEM94Q12767 1356 aa25.83■■□□□ 1.73
CCDC40-213ENST00000574933 NALCNQ8IZF0 1738 aa25.83■■□□□ 1.73
CCDC40-213ENST00000574933 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.83■■□□□ 1.73
CCDC40-213ENST00000574933 ZEB1P37275 1124 aaPredicted RBP25.83■■□□□ 1.73
CCDC40-213ENST00000574933 QRICH2Q9H0J4 1663 aa25.8■■□□□ 1.72
CCDC40-213ENST00000574933 PLEKHH1Q9ULM0 1364 aa25.8■■□□□ 1.72
CCDC40-213ENST00000574933 WAPLQ7Z5K2 1190 aa25.79■■□□□ 1.72
CCDC40-213ENST00000574933 EIF3AQ14152 1382 aaKnown RBP25.79■■□□□ 1.72
CCDC40-213ENST00000574933 ADGRL3Q9HAR2 1447 aa25.79■■□□□ 1.72
CCDC40-213ENST00000574933 PRAM1Q96QH2 718 aa25.78■■□□□ 1.72
CCDC40-213ENST00000574933 ADGRB2O60241 1585 aa25.78■■□□□ 1.72
CCDC40-213ENST00000574933 CERKQ8TCT0 537 aa25.76■■□□□ 1.71
CCDC40-213ENST00000574933 POGKQ9P215 609 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms