RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 TMC1Q8TDI8 760 aa19.12■□□□□ 0.65
VPS33B-208ENST00000574755 CHGAP10645 457 aaKnown RBP19.11■□□□□ 0.65
VPS33B-208ENST00000574755 ZBED9Q6R2W3 1325 aa19.11■□□□□ 0.65
VPS33B-208ENST00000574755 MYBBP1AQ9BQG0 1328 aaKnown RBP19.11■□□□□ 0.65
VPS33B-208ENST00000574755 ADGRF5Q8IZF2 1346 aa19.1■□□□□ 0.65
VPS33B-208ENST00000574755 YEATS2Q9ULM3 1422 aa19.1■□□□□ 0.65
VPS33B-208ENST00000574755 EIF3AQ14152 1382 aaKnown RBP19.1■□□□□ 0.65
VPS33B-208ENST00000574755 TSPOAP1O95153 1857 aa19.09■□□□□ 0.65
VPS33B-208ENST00000574755 PER1O15534 1290 aaPredicted RBP19.09■□□□□ 0.65
VPS33B-208ENST00000574755 CFAP70Q5T0N1 1121 aa19.08■□□□□ 0.65
VPS33B-208ENST00000574755 ZC3H13Q5T200 1668 aaKnown RBP19.08■□□□□ 0.64
VPS33B-208ENST00000574755 PANK3Q9H999 370 aa19.07■□□□□ 0.64
VPS33B-208ENST00000574755 BRD4O60885 1362 aaPredicted RBP19.07■□□□□ 0.64
VPS33B-208ENST00000574755 SIGLEC1Q9BZZ2 1709 aa19.07■□□□□ 0.64
VPS33B-208ENST00000574755 NOS1P29475 1434 aa19.06■□□□□ 0.64
VPS33B-208ENST00000574755 PARD3Q8TEW0 1356 aa19.06■□□□□ 0.64
VPS33B-208ENST00000574755 NRXN1Q9ULB1 1477 aa19.06■□□□□ 0.64
VPS33B-208ENST00000574755 PNISRQ8TF01 805 aaKnown RBP19.06■□□□□ 0.64
VPS33B-208ENST00000574755 BCANQ96GW7 911 aa19.06■□□□□ 0.64
VPS33B-208ENST00000574755 PPLO60437 1756 aa19.06■□□□□ 0.64
VPS33B-208ENST00000574755 CDCA8Q53HL2 280 aa19.05■□□□□ 0.64
VPS33B-208ENST00000574755 ZMYM4Q5VZL5 1548 aa19.04■□□□□ 0.64
VPS33B-208ENST00000574755 PELP1Q8IZL8 1130 aaKnown RBP19.03■□□□□ 0.64
VPS33B-208ENST00000574755 SYNMO15061 1565 aa19.02■□□□□ 0.64
VPS33B-208ENST00000574755 CC2D1BQ5T0F9 858 aaKnown RBP19.02■□□□□ 0.64
VPS33B-208ENST00000574755 NLRP13Q86W25 1043 aa19.02■□□□□ 0.64
VPS33B-208ENST00000574755 PIK3C2BO00750 1634 aa19.02■□□□□ 0.63
VPS33B-208ENST00000574755 ARHGAP31Q2M1Z3 1444 aa19.01■□□□□ 0.63
VPS33B-208ENST00000574755 KDM5AP29375 1690 aaKnown RBP19■□□□□ 0.63
VPS33B-208ENST00000574755 RPGRIP1LQ68CZ1 1315 aa18.99■□□□□ 0.63
VPS33B-208ENST00000574755 PIK3C2GO75747 1445 aa18.99■□□□□ 0.63
VPS33B-208ENST00000574755 SETBP1Q9Y6X0 1596 aa18.99■□□□□ 0.63
VPS33B-208ENST00000574755 LRPPRCP42704 1394 aaKnown RBP18.99■□□□□ 0.63
VPS33B-208ENST00000574755 SLC24A1O60721 1099 aa18.98■□□□□ 0.63
VPS33B-208ENST00000574755 MYOM1P52179 1685 aa18.98■□□□□ 0.63
VPS33B-208ENST00000574755 MYO3AQ8NEV4 1616 aa18.96■□□□□ 0.63
VPS33B-208ENST00000574755 KNSTRNQ9Y448 316 aa18.96■□□□□ 0.63
VPS33B-208ENST00000574755 PREX1Q8TCU6 1659 aa18.95■□□□□ 0.62
VPS33B-208ENST00000574755 C14orf93Q9H972 538 aaKnown RBP18.95■□□□□ 0.62
VPS33B-208ENST00000574755 ERVK-7P63135 1459 aa18.94■□□□□ 0.62
VPS33B-208ENST00000574755 NEXMIFQ5QGS0 1516 aa18.93■□□□□ 0.62
VPS33B-208ENST00000574755 IDI1Q13907 227 aa18.93■□□□□ 0.62
VPS33B-208ENST00000574755 SLC52A1Q9NWF4 448 aa18.92■□□□□ 0.62
VPS33B-208ENST00000574755 SENP3-EIF4A1A0A087X0R7 540 aa18.92■□□□□ 0.62
VPS33B-208ENST00000574755 VGFO15240 615 aaPredicted RBP18.92■□□□□ 0.62
VPS33B-208ENST00000574755 ADGRB1O14514 1584 aa18.92■□□□□ 0.62
VPS33B-208ENST00000574755 KIF13AQ9H1H9 1805 aa18.91■□□□□ 0.62
VPS33B-208ENST00000574755 REREQ9P2R6 1566 aa18.91■□□□□ 0.62
VPS33B-208ENST00000574755 IRX6P78412 446 aaPredicted RBP18.91■□□□□ 0.62
VPS33B-208ENST00000574755 NUTM2DQ5VT03 806 aaPredicted RBP18.91■□□□□ 0.62
VPS33B-208ENST00000574755 TRAK1Q9UPV9 953 aa18.91■□□□□ 0.62
VPS33B-208ENST00000574755 CENPJQ9HC77 1338 aaPredicted RBP18.91■□□□□ 0.62
VPS33B-208ENST00000574755 SBNO2Q9Y2G9 1366 aa18.91■□□□□ 0.62
VPS33B-208ENST00000574755 SMG6Q86US8 1419 aaKnown RBP18.9■□□□□ 0.62
VPS33B-208ENST00000574755 MYO5BQ9ULV0 1848 aa18.9■□□□□ 0.62
VPS33B-208ENST00000574755 TMEM132EQ6IEE7 984 aa18.9■□□□□ 0.62
VPS33B-208ENST00000574755 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
VPS33B-208ENST00000574755 QRICH2Q9H0J4 1663 aa18.9■□□□□ 0.62
VPS33B-208ENST00000574755 AMER1Q5JTC6 1135 aaPredicted RBP18.89■□□□□ 0.61
VPS33B-208ENST00000574755 AGLP35573 1532 aa18.88■□□□□ 0.61
VPS33B-208ENST00000574755 TMEM131LA2VDJ0 1609 aa18.87■□□□□ 0.61
VPS33B-208ENST00000574755 NUDCQ9Y266 331 aa18.87■□□□□ 0.61
VPS33B-208ENST00000574755 FBXO31Q5XUX0 539 aaPredicted RBP18.85■□□□□ 0.61
VPS33B-208ENST00000574755 CLTCQ00610 1675 aaKnown RBP18.85■□□□□ 0.61
VPS33B-208ENST00000574755 PPP2R1AP30153 589 aa18.83■□□□□ 0.61
VPS33B-208ENST00000574755 PPP6R1Q9UPN7 881 aa18.83■□□□□ 0.61
VPS33B-208ENST00000574755 NPC1L1Q9UHC9 1359 aa18.83■□□□□ 0.61
VPS33B-208ENST00000574755 ZFYVE9O95405 1425 aa18.83■□□□□ 0.6
VPS33B-208ENST00000574755 ARHGEF28Q8N1W1 1705 aaKnown RBP18.82■□□□□ 0.6
VPS33B-208ENST00000574755 ARHGEF40Q8TER5 1519 aa18.82■□□□□ 0.6
VPS33B-208ENST00000574755 ERICH6BQ5W0A0 696 aa18.82■□□□□ 0.6
VPS33B-208ENST00000574755 MLECQ14165 292 aa18.8■□□□□ 0.6
VPS33B-208ENST00000574755 SALL2Q9Y467 1007 aaPredicted RBP18.8■□□□□ 0.6
VPS33B-208ENST00000574755 INSRP06213 1382 aa18.8■□□□□ 0.6
VPS33B-208ENST00000574755 BLMP54132 1417 aaPredicted RBP18.8■□□□□ 0.6
VPS33B-208ENST00000574755 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
VPS33B-208ENST00000574755 STAG3Q9UJ98 1225 aa18.79■□□□□ 0.6
VPS33B-208ENST00000574755 CARD14Q9BXL6 1004 aa18.78■□□□□ 0.6
VPS33B-208ENST00000574755 SPATA31D1Q6ZQQ2 1576 aa18.75■□□□□ 0.59
VPS33B-208ENST00000574755 WDR43Q15061 677 aaKnown RBP eCLIP18.75■□□□□ 0.59
VPS33B-208ENST00000574755 EVC2Q86UK5 1308 aa18.75■□□□□ 0.59
VPS33B-208ENST00000574755 ADAMTS8Q9UP79 889 aa18.75■□□□□ 0.59
VPS33B-208ENST00000574755 PPP4R2Q9NY27 417 aa18.74■□□□□ 0.59
VPS33B-208ENST00000574755 PDE3BQ13370 1112 aa18.74■□□□□ 0.59
VPS33B-208ENST00000574755 SLC12A5Q9H2X9 1139 aa18.74■□□□□ 0.59
VPS33B-208ENST00000574755 TSHZ2Q9NRE2 1034 aa18.74■□□□□ 0.59
VPS33B-208ENST00000574755 STK26Q9P289 416 aa18.74■□□□□ 0.59
VPS33B-208ENST00000574755 TULP4Q9NRJ4 1543 aa18.73■□□□□ 0.59
VPS33B-208ENST00000574755 NSD3Q9BZ95 1437 aa18.72■□□□□ 0.59
VPS33B-208ENST00000574755 SAFB2Q14151 953 aaKnown RBP eCLIP18.72■□□□□ 0.59
VPS33B-208ENST00000574755 ESF1Q9H501 851 aaKnown RBP18.72■□□□□ 0.59
VPS33B-208ENST00000574755 RNF123Q5XPI4 1314 aa18.72■□□□□ 0.59
VPS33B-208ENST00000574755 PUS7Q96PZ0 661 aaKnown RBP18.7■□□□□ 0.58
VPS33B-208ENST00000574755 ALKQ9UM73 1620 aa18.7■□□□□ 0.58
VPS33B-208ENST00000574755 A2ML1A8K2U0 1454 aa18.7■□□□□ 0.58
VPS33B-208ENST00000574755 YTHDC2Q9H6S0 1430 aaKnown RBP18.69■□□□□ 0.58
VPS33B-208ENST00000574755 PTPRMP28827 1452 aa18.68■□□□□ 0.58
VPS33B-208ENST00000574755 CABP2Q9NPB3 220 aa18.67■□□□□ 0.58
VPS33B-208ENST00000574755 USP32Q8NFA0 1604 aa18.67■□□□□ 0.58
VPS33B-208ENST00000574755 CDCA7LQ96GN5 454 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms