RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 MYO3AQ8NEV4 1616 aa22.63■■□□□ 1.21
SMPD3-212ENST00000574662 SETD1BQ9UPS6 1966 aaKnown RBP22.63■■□□□ 1.21
SMPD3-212ENST00000574662 MIER1Q8N108 512 aa22.63■■□□□ 1.21
SMPD3-212ENST00000574662 UBR1Q8IWV7 1749 aa22.62■■□□□ 1.21
SMPD3-212ENST00000574662 ADGRF5Q8IZF2 1346 aa22.62■■□□□ 1.21
SMPD3-212ENST00000574662 NEXMIFQ5QGS0 1516 aa22.6■■□□□ 1.21
SMPD3-212ENST00000574662 STAC3Q96MF2 364 aa22.6■■□□□ 1.21
SMPD3-212ENST00000574662 UHRF1BP1Q6BDS2 1440 aa22.6■■□□□ 1.21
SMPD3-212ENST00000574662 THEMISQ8N1K5 641 aaPredicted RBP22.58■■□□□ 1.21
SMPD3-212ENST00000574662 KDM5AP29375 1690 aaKnown RBP22.58■■□□□ 1.21
SMPD3-212ENST00000574662 IFT172Q9UG01 1749 aa22.58■■□□□ 1.21
SMPD3-212ENST00000574662 CEP170BQ9Y4F5 1589 aaPredicted RBP22.58■■□□□ 1.21
SMPD3-212ENST00000574662 PRAG1Q86YV5 1406 aa22.58■■□□□ 1.2
SMPD3-212ENST00000574662 RIMS2Q9UQ26 1411 aa22.58■■□□□ 1.2
SMPD3-212ENST00000574662 PPLO60437 1756 aa22.57■■□□□ 1.2
SMPD3-212ENST00000574662 TMEM2Q9UHN6 1383 aa22.57■■□□□ 1.2
SMPD3-212ENST00000574662 ZFYVE9O95405 1425 aa22.57■■□□□ 1.2
SMPD3-212ENST00000574662 VGFO15240 615 aaPredicted RBP22.56■■□□□ 1.2
SMPD3-212ENST00000574662 MYOM2P54296 1465 aa22.55■■□□□ 1.2
SMPD3-212ENST00000574662 LTKP29376 864 aa22.55■■□□□ 1.2
SMPD3-212ENST00000574662 SENP3Q9H4L4 574 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-212ENST00000574662 NRXN1Q9ULB1 1477 aa22.53■■□□□ 1.2
SMPD3-212ENST00000574662 ZNF142P52746 1687 aaPredicted RBP22.52■■□□□ 1.2
SMPD3-212ENST00000574662 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.52■■□□□ 1.2
SMPD3-212ENST00000574662 ARHGAP23Q9P227 1491 aa22.51■■□□□ 1.19
SMPD3-212ENST00000574662 NBPF1Q3BBV0 1214 aa22.51■■□□□ 1.19
SMPD3-212ENST00000574662 TXNDC2Q86VQ3 553 aa22.51■■□□□ 1.19
SMPD3-212ENST00000574662 HDGFP51858 240 aaKnown RBP22.5■■□□□ 1.19
SMPD3-212ENST00000574662 CFAP70Q5T0N1 1121 aa22.5■■□□□ 1.19
SMPD3-212ENST00000574662 YTHDC1Q96MU7 727 aaKnown RBP22.5■■□□□ 1.19
SMPD3-212ENST00000574662 SLIT1O75093 1534 aa22.5■■□□□ 1.19
SMPD3-212ENST00000574662 PIK3C2GO75747 1445 aa22.48■■□□□ 1.19
SMPD3-212ENST00000574662 C14orf93Q9H972 538 aaKnown RBP22.47■■□□□ 1.19
SMPD3-212ENST00000574662 EID1Q9Y6B2 187 aa22.47■■□□□ 1.19
SMPD3-212ENST00000574662 RALGAPBQ86X10 1494 aa22.45■■□□□ 1.18
SMPD3-212ENST00000574662 TRPM1Q7Z4N2 1603 aa22.45■■□□□ 1.18
SMPD3-212ENST00000574662 HSPA2P54652 639 aa22.43■■□□□ 1.18
SMPD3-212ENST00000574662 ANKLE2Q86XL3 938 aa22.43■■□□□ 1.18
SMPD3-212ENST00000574662 ROCK2O75116 1388 aaKnown RBP22.43■■□□□ 1.18
SMPD3-212ENST00000574662 LMTK3Q96Q04 1460 aa22.42■■□□□ 1.18
SMPD3-212ENST00000574662 TMEM132EQ6IEE7 984 aa22.41■■□□□ 1.18
SMPD3-212ENST00000574662 CARD11Q9BXL7 1154 aa22.41■■□□□ 1.18
SMPD3-212ENST00000574662 SCAF11Q99590 1463 aaKnown RBP22.41■■□□□ 1.18
SMPD3-212ENST00000574662 PLEKHG1Q9ULL1 1385 aa22.41■■□□□ 1.18
SMPD3-212ENST00000574662 BCANQ96GW7 911 aa22.4■■□□□ 1.18
SMPD3-212ENST00000574662 NCKAP5LQ9HCH0 1330 aa22.4■■□□□ 1.18
SMPD3-212ENST00000574662 GPRASP1Q5JY77 1395 aa22.39■■□□□ 1.18
SMPD3-212ENST00000574662 ALKQ9UM73 1620 aa22.38■■□□□ 1.17
SMPD3-212ENST00000574662 NRXN3Q9Y4C0 1643 aa22.37■■□□□ 1.17
SMPD3-212ENST00000574662 KIAA1210Q9ULL0 1709 aa22.37■■□□□ 1.17
SMPD3-212ENST00000574662 SLC26A8Q96RN1 970 aa22.37■■□□□ 1.17
SMPD3-212ENST00000574662 HIRIP3Q9BW71 556 aaPredicted RBP22.36■■□□□ 1.17
SMPD3-212ENST00000574662 ADAMTS13Q76LX8 1427 aa22.36■■□□□ 1.17
SMPD3-212ENST00000574662 SETBP1Q9Y6X0 1596 aa22.36■■□□□ 1.17
SMPD3-212ENST00000574662 ADGRB1O14514 1584 aa22.34■■□□□ 1.17
SMPD3-212ENST00000574662 HSPA5P11021 654 aaKnown RBP22.34■■□□□ 1.17
SMPD3-212ENST00000574662 IQGAP1P46940 1657 aa22.34■■□□□ 1.17
SMPD3-212ENST00000574662 MED14O60244 1454 aa22.33■■□□□ 1.16
SMPD3-212ENST00000574662 METP08581 1390 aa22.33■■□□□ 1.16
SMPD3-212ENST00000574662 EIF4G2P78344 907 aaKnown RBP eCLIP22.33■■□□□ 1.16
SMPD3-212ENST00000574662 ASXL1Q8IXJ9 1541 aa22.32■■□□□ 1.16
SMPD3-212ENST00000574662 USP47Q96K76 1375 aa22.31■■□□□ 1.16
SMPD3-212ENST00000574662 TBX22Q9Y458 520 aa22.31■■□□□ 1.16
SMPD3-212ENST00000574662 SETD1AO15047 1707 aaKnown RBP22.3■■□□□ 1.16
SMPD3-212ENST00000574662 LAMC1P11047 1609 aa22.3■■□□□ 1.16
SMPD3-212ENST00000574662 NPHP4O75161 1426 aaPredicted RBP22.3■■□□□ 1.16
SMPD3-212ENST00000574662 STK26Q9P289 416 aa22.29■■□□□ 1.16
SMPD3-212ENST00000574662 TRAK1Q9UPV9 953 aa22.29■■□□□ 1.16
SMPD3-212ENST00000574662 ST20-MTHFSA0A0A6YYL1 179 aa22.27■■□□□ 1.16
SMPD3-212ENST00000574662 POLR1AO95602 1720 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-212ENST00000574662 YTHDC2Q9H6S0 1430 aaKnown RBP22.26■■□□□ 1.15
SMPD3-212ENST00000574662 PTPRUQ92729 1446 aa22.23■■□□□ 1.15
SMPD3-212ENST00000574662 STRCQ7RTU9 1775 aa22.23■■□□□ 1.15
SMPD3-212ENST00000574662 LRPPRCP42704 1394 aaKnown RBP22.23■■□□□ 1.15
SMPD3-212ENST00000574662 DIP2AQ14689 1571 aa22.21■■□□□ 1.15
SMPD3-212ENST00000574662 ABCC11Q96J66 1382 aa22.21■■□□□ 1.15
SMPD3-212ENST00000574662 AMOTL2Q9Y2J4 779 aa22.2■■□□□ 1.14
SMPD3-212ENST00000574662 TESK2Q96S53 571 aa22.19■■□□□ 1.14
SMPD3-212ENST00000574662 C11orf95C9JLR9 678 aaPredicted RBP22.18■■□□□ 1.14
SMPD3-212ENST00000574662 WAPLQ7Z5K2 1190 aa22.17■■□□□ 1.14
SMPD3-212ENST00000574662 PRAM1Q96QH2 718 aa22.17■■□□□ 1.14
SMPD3-212ENST00000574662 EIF3AQ14152 1382 aaKnown RBP22.16■■□□□ 1.14
SMPD3-212ENST00000574662 PIK3R4Q99570 1358 aa22.16■■□□□ 1.14
SMPD3-212ENST00000574662 CENPJQ9HC77 1338 aaPredicted RBP22.15■■□□□ 1.14
SMPD3-212ENST00000574662 SAFB2Q14151 953 aaKnown RBP eCLIP22.15■■□□□ 1.14
SMPD3-212ENST00000574662 DMRT2Q9Y5R5 561 aa22.15■■□□□ 1.14
SMPD3-212ENST00000574662 TECPR2O15040 1411 aa22.14■■□□□ 1.13
SMPD3-212ENST00000574662 ROBO2Q9HCK4 1378 aa22.14■■□□□ 1.13
SMPD3-212ENST00000574662 PLEKHH1Q9ULM0 1364 aa22.14■■□□□ 1.13
SMPD3-212ENST00000574662 ARHGEF28Q8N1W1 1705 aaKnown RBP22.14■■□□□ 1.13
SMPD3-212ENST00000574662 KCNA6P17658 529 aa22.14■■□□□ 1.13
SMPD3-212ENST00000574662 SIRT1Q96EB6 747 aa22.14■■□□□ 1.13
SMPD3-212ENST00000574662 POGKQ9P215 609 aa22.13■■□□□ 1.13
SMPD3-212ENST00000574662 DLC1Q96QB1 1528 aa22.12■■□□□ 1.13
SMPD3-212ENST00000574662 CHD2O14647 1828 aaKnown RBP22.11■■□□□ 1.13
SMPD3-212ENST00000574662 FAM135BQ49AJ0 1406 aa22.09■■□□□ 1.13
SMPD3-212ENST00000574662 KNDC1Q76NI1 1749 aa22.09■■□□□ 1.13
SMPD3-212ENST00000574662 XRN1Q8IZH2 1706 aaKnown RBP22.09■■□□□ 1.13
SMPD3-212ENST00000574662 CPS1P31327 1500 aa22.08■■□□□ 1.13
SMPD3-212ENST00000574662 WASHC2AQ641Q2 1341 aa22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms