RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ATMINO43313 823 aaPredicted RBP3.43□□□□□ -1.86
CHD3-217ENST00000574022 CLCN6P51797 869 aa3.43□□□□□ -1.86
CHD3-217ENST00000574022 C6orf132Q5T0Z8 1188 aa3.43□□□□□ -1.86
CHD3-217ENST00000574022 ZNF710Q8N1W2 664 aa3.43□□□□□ -1.86
CHD3-217ENST00000574022 USTQ9Y2C2 406 aa3.43□□□□□ -1.86
CHD3-217ENST00000574022 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 NUTM2BA6NNL0 878 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 NUTM2EB1AL46 878 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 LILRB3O75022 631 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 SEC24BO95487 1268 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 GJA5P36382 358 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 WASHC4Q2M389 1173 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 RTL5Q5HYW3 569 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 NUTM2DQ5VT03 806 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 ASTLQ6HA08 431 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 RSBN1LQ6PCB5 846 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 NUTM2AQ8IVF1 878 aaPredicted RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 TTC13Q8NBP0 860 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 JPH4Q96JJ6 628 aa3.42□□□□□ -1.86
CHD3-217ENST00000574022 RBM27Q9P2N5 1060 aaKnown RBP3.42□□□□□ -1.86
CHD3-217ENST00000574022 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.41□□□□□ -1.86
CHD3-217ENST00000574022 MOXD2PA6NHM9 499 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 USP17L8P0C7I0 530 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 CD46P15529 392 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 NDUFV2P19404 249 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 PRSS12P56730 875 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 SRPK2P78362 688 aaKnown RBP3.41□□□□□ -1.86
CHD3-217ENST00000574022 QPCTQ16769 361 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 CFAP70Q5T0N1 1121 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 SULF1Q8IWU6 871 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 PPP1R12CQ9BZL4 782 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 PCDHB15Q9Y5E8 787 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 NDUFB9Q9Y6M9 179 aa3.41□□□□□ -1.86
CHD3-217ENST00000574022 RCCD1A6NED2 376 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 IGSF3O75054 1194 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 FOSBP53539 338 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 CCDC27Q2M243 656 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 PRPF38BQ5VTL8 546 aaKnown RBP3.4□□□□□ -1.87
CHD3-217ENST00000574022 ADAMTS19Q8TE59 1207 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 ZDHHC16Q969W1 377 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 CDCA7LQ96GN5 454 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 VRTNQ9H8Y1 702 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 AMOTL2Q9Y2J4 779 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 PCDHGA4Q9Y5G9 962 aa3.4□□□□□ -1.87
CHD3-217ENST00000574022 CARNS1A5YM72 827 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 DDX11L8A8MPP1 907 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 LMOD1P29536 600 aaPredicted RBP3.39□□□□□ -1.87
CHD3-217ENST00000574022 C3orf67Q6ZVT6 689 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 ZNF454Q8N9F8 522 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 CABLES1Q8TDN4 633 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 GJD4Q96KN9 370 aaPredicted RBP3.39□□□□□ -1.87
CHD3-217ENST00000574022 EYA1Q99502 592 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 MYT1LQ9UL68 1186 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 COLQQ9Y215 455 aaPredicted RBP3.39□□□□□ -1.87
CHD3-217ENST00000574022 IVNS1ABPQ9Y6Y0 642 aa3.39□□□□□ -1.87
CHD3-217ENST00000574022 PALM3A6NDB9 673 aaPredicted RBP3.38□□□□□ -1.87
CHD3-217ENST00000574022 VAC14Q08AM6 782 aa3.38□□□□□ -1.87
CHD3-217ENST00000574022 SND1Q7KZF4 910 aaKnown RBP eCLIP3.38□□□□□ -1.87
CHD3-217ENST00000574022 ALG2Q9H553 416 aa3.38□□□□□ -1.87
CHD3-217ENST00000574022 ZBTB3Q9H5J0 574 aa3.38□□□□□ -1.87
CHD3-217ENST00000574022 TFIP11Q9UBB9 837 aaKnown RBP3.38□□□□□ -1.87
CHD3-217ENST00000574022 KDM4FA0A1W2PPD8 638 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 KDM4AO75164 1064 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 ATG7O95352 703 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 DNAJB2P25686 324 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 USP46P62068 366 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 CTDSPL2Q05D32 466 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 CDCA8Q53HL2 280 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 RDH13Q8NBN7 331 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 ADAM33Q9BZ11 813 aa3.37□□□□□ -1.87
CHD3-217ENST00000574022 TMEM88BA6NKF7 163 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 HAX1O00165 279 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 FDX1P10109 184 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 SOX11P35716 441 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 SEMA3FQ13275 785 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 RSPH4AQ5TD94 716 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 NUDT18Q6ZVK8 323 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 TRIM34Q9BYJ4 488 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 HMX1Q9NP08 348 aaPredicted RBP3.36□□□□□ -1.87
CHD3-217ENST00000574022 FAM198AQ9UFP1 575 aa3.36□□□□□ -1.87
CHD3-217ENST00000574022 GCGRP47871 477 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 B4GALNT3Q6L9W6 998 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 PELP1Q8IZL8 1130 aaKnown RBP3.35□□□□□ -1.87
CHD3-217ENST00000574022 PNMA1Q8ND90 353 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 HELBQ8NG08 1087 aaPredicted RBP3.35□□□□□ -1.87
CHD3-217ENST00000574022 PRR7Q8TB68 274 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 LRRN4Q8WUT4 740 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 TSC1Q92574 1164 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 TMEM134Q9H6X4 195 aa3.35□□□□□ -1.87
CHD3-217ENST00000574022 GNEQ9Y223 722 aaKnown RBP3.35□□□□□ -1.87
CHD3-217ENST00000574022 NBPF26B4DH59 902 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 HOXA2O43364 376 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 GPR37L1O60883 481 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 C7P10643 843 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 COL9A1P20849 921 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 MTMR2Q13614 643 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 PACS2Q86VP3 889 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 CCER1Q8TC90 406 aaPredicted RBP3.34□□□□□ -1.87
CHD3-217ENST00000574022 SLC39A7Q92504 469 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 TATDN2Q93075 761 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms