RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 FAM135AQ9P2D6 1515 aa13.28□□□□□ -0.28
SMG6-213ENST00000573166 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
SMG6-213ENST00000573166 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
SMG6-213ENST00000573166 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
SMG6-213ENST00000573166 ESCO1Q5FWF5 840 aa13.28□□□□□ -0.28
SMG6-213ENST00000573166 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.28□□□□□ -0.28
SMG6-213ENST00000573166 CCDC9Q9Y3X0 531 aaKnown RBP13.27□□□□□ -0.28
SMG6-213ENST00000573166 CCDC7Q96M83 1385 aa13.27□□□□□ -0.29
SMG6-213ENST00000573166 PMFBP1Q8TBY8 1022 aa13.27□□□□□ -0.29
SMG6-213ENST00000573166 NOS1P29475 1434 aa13.27□□□□□ -0.29
SMG6-213ENST00000573166 ADGRL2O95490 1459 aa13.26□□□□□ -0.29
SMG6-213ENST00000573166 RPRD2Q5VT52 1461 aaKnown RBP13.26□□□□□ -0.29
SMG6-213ENST00000573166 ADCY10Q96PN6 1610 aa13.26□□□□□ -0.29
SMG6-213ENST00000573166 WAPLQ7Z5K2 1190 aa13.26□□□□□ -0.29
SMG6-213ENST00000573166 CDK19Q9BWU1 502 aa13.26□□□□□ -0.29
SMG6-213ENST00000573166 AMOTL2Q9Y2J4 779 aa13.25□□□□□ -0.29
SMG6-213ENST00000573166 SUPT16HQ9Y5B9 1047 aaKnown RBP13.25□□□□□ -0.29
SMG6-213ENST00000573166 ZFYVE16Q7Z3T8 1539 aa13.25□□□□□ -0.29
SMG6-213ENST00000573166 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
SMG6-213ENST00000573166 HSPA2P54652 639 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 NUTM2GQ5VZR2 741 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 RBM33Q96EV2 1170 aaKnown RBP13.24□□□□□ -0.29
SMG6-213ENST00000573166 CFAP74Q9C0B2 1584 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 WASHC2AQ641Q2 1341 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 SAMD9LQ8IVG5 1584 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 ARXQ96QS3 562 aa13.24□□□□□ -0.29
SMG6-213ENST00000573166 GGNBP2Q9H3C7 697 aa13.23□□□□□ -0.29
SMG6-213ENST00000573166 PRKRIP1Q9H875 184 aaPredicted RBP13.23□□□□□ -0.29
SMG6-213ENST00000573166 RTF1Q92541 710 aaKnown RBP13.23□□□□□ -0.29
SMG6-213ENST00000573166 CABP1Q9NZU7 370 aa13.23□□□□□ -0.29
SMG6-213ENST00000573166 CNTLNQ9NXG0 1405 aa13.23□□□□□ -0.29
SMG6-213ENST00000573166 SHROOM2Q13796 1616 aa13.22□□□□□ -0.29
SMG6-213ENST00000573166 NLRP6P59044 892 aa13.22□□□□□ -0.29
SMG6-213ENST00000573166 ARHGEF5Q12774 1597 aa13.22□□□□□ -0.29
SMG6-213ENST00000573166 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
SMG6-213ENST00000573166 ABCC1P33527 1531 aa13.21□□□□□ -0.29
SMG6-213ENST00000573166 GPRASP1Q5JY77 1395 aa13.21□□□□□ -0.29
SMG6-213ENST00000573166 MYBBP1AQ9BQG0 1328 aaKnown RBP13.21□□□□□ -0.3
SMG6-213ENST00000573166 PREX2Q70Z35 1606 aa13.21□□□□□ -0.3
SMG6-213ENST00000573166 IRX6P78412 446 aaPredicted RBP13.2□□□□□ -0.3
SMG6-213ENST00000573166 DMRT2Q9Y5R5 561 aa13.2□□□□□ -0.3
SMG6-213ENST00000573166 MLH3Q9UHC1 1453 aa13.2□□□□□ -0.3
SMG6-213ENST00000573166 ABTB2Q8N961 1025 aa13.19□□□□□ -0.3
SMG6-213ENST00000573166 CCDC61Q9Y6R9 512 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 MAGI2Q86UL8 1455 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 EVA1CP58658 441 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 DAXXQ9UER7 740 aaPredicted RBP13.18□□□□□ -0.3
SMG6-213ENST00000573166 PZPP20742 1482 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 CFAP65Q6ZU64 1925 aaKnown RBP13.18□□□□□ -0.3
SMG6-213ENST00000573166 RIMS2Q9UQ26 1411 aa13.18□□□□□ -0.3
SMG6-213ENST00000573166 CCDC146Q8IYE0 955 aa13.17□□□□□ -0.3
SMG6-213ENST00000573166 NUDT16Q96DE0 195 aaKnown RBP13.17□□□□□ -0.3
SMG6-213ENST00000573166 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
SMG6-213ENST00000573166 PIP4K2BP78356 416 aa13.15□□□□□ -0.3
SMG6-213ENST00000573166 ATAD2Q6PL18 1390 aa13.15□□□□□ -0.3
SMG6-213ENST00000573166 XPCQ01831 940 aaPredicted RBP13.15□□□□□ -0.31
SMG6-213ENST00000573166 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
SMG6-213ENST00000573166 CDC42BPAQ5VT25 1732 aa13.14□□□□□ -0.31
SMG6-213ENST00000573166 ARAP3Q8WWN8 1544 aa13.13□□□□□ -0.31
SMG6-213ENST00000573166 DIAPH1O60610 1272 aaKnown RBP13.13□□□□□ -0.31
SMG6-213ENST00000573166 FRAT1Q92837 279 aaPredicted RBP13.13□□□□□ -0.31
SMG6-213ENST00000573166 NPATQ14207 1427 aa13.12□□□□□ -0.31
SMG6-213ENST00000573166 CCDC136Q96JN2 1154 aa13.12□□□□□ -0.31
SMG6-213ENST00000573166 WASLO00401 505 aaPredicted RBP13.12□□□□□ -0.31
SMG6-213ENST00000573166 UHRF1BP1Q6BDS2 1440 aa13.12□□□□□ -0.31
SMG6-213ENST00000573166 HECW2Q9P2P5 1572 aa13.11□□□□□ -0.31
SMG6-213ENST00000573166 MAST1Q9Y2H9 1570 aa13.11□□□□□ -0.31
SMG6-213ENST00000573166 MEX3CQ5U5Q3 659 aaKnown RBP13.11□□□□□ -0.31
SMG6-213ENST00000573166 CALD1Q05682 793 aaKnown RBP13.11□□□□□ -0.31
SMG6-213ENST00000573166 FTSJ3Q8IY81 847 aaKnown RBP13.11□□□□□ -0.31
SMG6-213ENST00000573166 FOXO3O43524 673 aa13.11□□□□□ -0.31
SMG6-213ENST00000573166 MTHFSP49914 203 aa13.11□□□□□ -0.31
SMG6-213ENST00000573166 RRP7AQ9Y3A4 280 aaKnown RBP13.11□□□□□ -0.31
SMG6-213ENST00000573166 SCAF11Q99590 1463 aaKnown RBP13.1□□□□□ -0.31
SMG6-213ENST00000573166 ABCA9Q8IUA7 1624 aa13.1□□□□□ -0.31
SMG6-213ENST00000573166 KDM6BO15054 1643 aa13.1□□□□□ -0.31
SMG6-213ENST00000573166 ADGBQ8N7X0 1667 aa13.09□□□□□ -0.31
SMG6-213ENST00000573166 NLRP2Q9NX02 1062 aa13.09□□□□□ -0.31
SMG6-213ENST00000573166 PHF8Q9UPP1 1060 aa13.09□□□□□ -0.31
SMG6-213ENST00000573166 C11orf95C9JLR9 678 aaPredicted RBP13.08□□□□□ -0.32
SMG6-213ENST00000573166 MYH16Q9H6N6 1097 aa13.08□□□□□ -0.32
SMG6-213ENST00000573166 TBX22Q9Y458 520 aa13.08□□□□□ -0.32
SMG6-213ENST00000573166 CADPS2Q86UW7 1296 aa13.08□□□□□ -0.32
SMG6-213ENST00000573166 PRAG1Q86YV5 1406 aa13.07□□□□□ -0.32
SMG6-213ENST00000573166 LMOD3Q0VAK6 560 aa13.07□□□□□ -0.32
SMG6-213ENST00000573166 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
SMG6-213ENST00000573166 KCNA6P17658 529 aa13.06□□□□□ -0.32
SMG6-213ENST00000573166 NUTM2BA6NNL0 878 aaPredicted RBP13.06□□□□□ -0.32
SMG6-213ENST00000573166 NUTM2EB1AL46 878 aaPredicted RBP13.06□□□□□ -0.32
SMG6-213ENST00000573166 NUTM2AQ8IVF1 878 aaPredicted RBP13.06□□□□□ -0.32
SMG6-213ENST00000573166 HMOX1P09601 288 aa13.06□□□□□ -0.32
SMG6-213ENST00000573166 C1orf141Q5JVX7 400 aa13.05□□□□□ -0.32
SMG6-213ENST00000573166 APAF1O14727 1248 aa13.05□□□□□ -0.32
SMG6-213ENST00000573166 GOLGA2Q08379 1002 aa13.05□□□□□ -0.32
SMG6-213ENST00000573166 USP35Q9P2H5 1018 aa13.05□□□□□ -0.32
SMG6-213ENST00000573166 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
SMG6-213ENST00000573166 ZNF330Q9Y3S2 320 aaPredicted RBP13.04□□□□□ -0.32
SMG6-213ENST00000573166 LTKP29376 864 aa13.04□□□□□ -0.32
SMG6-213ENST00000573166 PPP2R1AP30153 589 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms