RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ONECUT3O60422 494 aaPredicted RBP10.29□□□□□ -0.76
VPS53-212ENST00000572259 PROX2Q3B8N5 592 aa10.29□□□□□ -0.76
VPS53-212ENST00000572259 NUDT18Q6ZVK8 323 aa10.29□□□□□ -0.76
VPS53-212ENST00000572259 ZNF687Q8N1G0 1237 aa10.29□□□□□ -0.76
VPS53-212ENST00000572259 AXIN2Q9Y2T1 843 aa10.29□□□□□ -0.76
VPS53-212ENST00000572259 PBX2P40425 430 aa10.28□□□□□ -0.76
VPS53-212ENST00000572259 TATDN2Q93075 761 aa10.28□□□□□ -0.76
VPS53-212ENST00000572259 DDRGK1Q96HY6 314 aa10.28□□□□□ -0.76
VPS53-212ENST00000572259 ZBED2Q9BTP6 218 aa10.28□□□□□ -0.76
VPS53-212ENST00000572259 NLRP7Q8WX94 980 aa10.27□□□□□ -0.77
VPS53-212ENST00000572259 FAM117AQ9C073 453 aa10.27□□□□□ -0.77
VPS53-212ENST00000572259 ERCC6Q03468 1493 aa10.27□□□□□ -0.77
VPS53-212ENST00000572259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.26□□□□□ -0.77
VPS53-212ENST00000572259 HS3ST6Q96QI5 342 aa10.26□□□□□ -0.77
VPS53-212ENST00000572259 REPIN1Q9BWE0 567 aaKnown RBP10.26□□□□□ -0.77
VPS53-212ENST00000572259 KIAA1468Q9P260 1216 aa10.26□□□□□ -0.77
VPS53-212ENST00000572259 RCCD1A6NED2 376 aa10.25□□□□□ -0.77
VPS53-212ENST00000572259 SSTR3P32745 418 aaPredicted RBP10.25□□□□□ -0.77
VPS53-212ENST00000572259 EYA1Q99502 592 aa10.25□□□□□ -0.77
VPS53-212ENST00000572259 LAMC3Q9Y6N6 1575 aa10.24□□□□□ -0.77
VPS53-212ENST00000572259 TMUB1Q9BVT8 246 aa10.24□□□□□ -0.77
VPS53-212ENST00000572259 TOP2AP11388 1531 aaKnown RBP10.23□□□□□ -0.77
VPS53-212ENST00000572259 SMAPO00193 183 aa10.23□□□□□ -0.77
VPS53-212ENST00000572259 DNAJB2P25686 324 aa10.23□□□□□ -0.77
VPS53-212ENST00000572259 DMRTA1Q5VZB9 504 aa10.23□□□□□ -0.77
VPS53-212ENST00000572259 POTEEQ6S8J3 1075 aa10.23□□□□□ -0.77
VPS53-212ENST00000572259 SLC4A5Q9BY07 1137 aa10.23□□□□□ -0.77
VPS53-212ENST00000572259 MS4A1P11836 297 aa10.22□□□□□ -0.77
VPS53-212ENST00000572259 RABGEF1Q9UJ41 708 aa10.22□□□□□ -0.77
VPS53-212ENST00000572259 CADPSQ9ULU8 1353 aa10.22□□□□□ -0.77
VPS53-212ENST00000572259 PDS5BQ9NTI5 1447 aa10.22□□□□□ -0.77
VPS53-212ENST00000572259 FAM217BQ9NTX9 383 aaPredicted RBP10.21□□□□□ -0.77
VPS53-212ENST00000572259 NESP48681 1621 aa10.21□□□□□ -0.78
VPS53-212ENST00000572259 C3orf80F5H4A9 247 aa10.2□□□□□ -0.78
VPS53-212ENST00000572259 POTEB3A0JP26 581 aa10.19□□□□□ -0.78
VPS53-212ENST00000572259 HDGFP51858 240 aaKnown RBP10.19□□□□□ -0.78
VPS53-212ENST00000572259 POTEBQ6S5H4 581 aa10.19□□□□□ -0.78
VPS53-212ENST00000572259 VPS9D1Q9Y2B5 631 aa10.19□□□□□ -0.78
VPS53-212ENST00000572259 PLEKHG3A1L390 1219 aa10.18□□□□□ -0.78
VPS53-212ENST00000572259 BEGAINQ9BUH8 593 aa10.18□□□□□ -0.78
VPS53-212ENST00000572259 SULF1Q8IWU6 871 aa10.17□□□□□ -0.78
VPS53-212ENST00000572259 NBPF3Q9H094 633 aa10.17□□□□□ -0.78
VPS53-212ENST00000572259 TMEM134Q9H6X4 195 aa10.17□□□□□ -0.78
VPS53-212ENST00000572259 SEPT9Q9UHD8 586 aaPredicted RBP10.17□□□□□ -0.78
VPS53-212ENST00000572259 DDX11L8A8MPP1 907 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 TK2O00142 265 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 SLC4A3P48751 1232 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 RSPH4AQ5TD94 716 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 STAC3Q96MF2 364 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 CUX2O14529 1486 aa10.15□□□□□ -0.78
VPS53-212ENST00000572259 FAM98CQ17RN3 349 aaKnown RBP10.14□□□□□ -0.79
VPS53-212ENST00000572259 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
VPS53-212ENST00000572259 ATP1B4Q9UN42 357 aaPredicted RBP10.14□□□□□ -0.79
VPS53-212ENST00000572259 SUPT5HO00267 1087 aaKnown RBP10.13□□□□□ -0.79
VPS53-212ENST00000572259 LSM11P83369 360 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS53-212ENST00000572259 NPM2Q86SE8 214 aaKnown RBP10.13□□□□□ -0.79
VPS53-212ENST00000572259 LAPTM4BQ86VI4 370 aa10.13□□□□□ -0.79
VPS53-212ENST00000572259 MRPL50Q8N5N7 158 aaKnown RBP10.13□□□□□ -0.79
VPS53-212ENST00000572259 CCDC88BA6NC98 1476 aa10.12□□□□□ -0.79
VPS53-212ENST00000572259 CFTRP13569 1480 aa10.12□□□□□ -0.79
VPS53-212ENST00000572259 ADGRD1Q6QNK2 874 aa10.12□□□□□ -0.79
VPS53-212ENST00000572259 ANKRD13DQ6ZTN6 518 aa10.12□□□□□ -0.79
VPS53-212ENST00000572259 RDH13Q8NBN7 331 aa10.12□□□□□ -0.79
VPS53-212ENST00000572259 DIXDC1Q155Q3 683 aa10.11□□□□□ -0.79
VPS53-212ENST00000572259 SWT1Q5T5J6 900 aaKnown RBP10.11□□□□□ -0.79
VPS53-212ENST00000572259 PCMTD1Q96MG8 357 aaPredicted RBP10.11□□□□□ -0.79
VPS53-212ENST00000572259 GOPCQ9HD26 462 aa10.11□□□□□ -0.79
VPS53-212ENST00000572259 KIF21AQ7Z4S6 1674 aa10.11□□□□□ -0.79
VPS53-212ENST00000572259 CD46P15529 392 aa10.1□□□□□ -0.79
VPS53-212ENST00000572259 GOLGA8CPA6NN73 597 aa10.09□□□□□ -0.79
VPS53-212ENST00000572259 BHMG1C9JSJ3 638 aaPredicted RBP10.09□□□□□ -0.79
VPS53-212ENST00000572259 SH3D19Q5HYK7 790 aa10.09□□□□□ -0.79
VPS53-212ENST00000572259 NUTM1Q86Y26 1132 aa10.09□□□□□ -0.79
VPS53-212ENST00000572259 TBC1D2Q9BYX2 928 aa10.08□□□□□ -0.8
VPS53-212ENST00000572259 FANCD2Q9BXW9 1451 aa10.08□□□□□ -0.8
VPS53-212ENST00000572259 CEP164Q9UPV0 1460 aa10.08□□□□□ -0.8
VPS53-212ENST00000572259 RNF40O75150 1001 aa10.07□□□□□ -0.8
VPS53-212ENST00000572259 SAMD7Q7Z3H4 446 aa10.07□□□□□ -0.8
VPS53-212ENST00000572259 SLF2Q8IX21 1173 aa10.07□□□□□ -0.8
VPS53-212ENST00000572259 PRDM2Q13029 1718 aa10.07□□□□□ -0.8
VPS53-212ENST00000572259 SKIV2LQ15477 1246 aaKnown RBP10.06□□□□□ -0.8
VPS53-212ENST00000572259 ZFRQ96KR1 1074 aaKnown RBP10.06□□□□□ -0.8
VPS53-212ENST00000572259 POLR3EQ9NVU0 708 aa10.06□□□□□ -0.8
VPS53-212ENST00000572259 THOC2Q8NI27 1593 aaKnown RBP10.05□□□□□ -0.8
VPS53-212ENST00000572259 MRC2Q9UBG0 1479 aa10.05□□□□□ -0.8
VPS53-212ENST00000572259 MYSM1Q5VVJ2 828 aa10.04□□□□□ -0.8
VPS53-212ENST00000572259 SPIRE2Q8WWL2 714 aa10.04□□□□□ -0.8
VPS53-212ENST00000572259 HRO43593 1189 aa10.03□□□□□ -0.8
VPS53-212ENST00000572259 LRCH3Q96II8 777 aa10.03□□□□□ -0.8
VPS53-212ENST00000572259 KDM4AO75164 1064 aa10.02□□□□□ -0.81
VPS53-212ENST00000572259 SLC10A3P09131 477 aa10.02□□□□□ -0.81
VPS53-212ENST00000572259 GCGRP47871 477 aa10.02□□□□□ -0.81
VPS53-212ENST00000572259 ANKK1Q8NFD2 765 aa10.02□□□□□ -0.81
VPS53-212ENST00000572259 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.02□□□□□ -0.81
VPS53-212ENST00000572259 CLK2P49760 499 aaKnown RBP10.01□□□□□ -0.81
VPS53-212ENST00000572259 RIC3Q7Z5B4 369 aa10.01□□□□□ -0.81
VPS53-212ENST00000572259 NECTIN2Q92692 538 aa10.01□□□□□ -0.81
VPS53-212ENST00000572259 PROCA1Q8NCQ7 364 aaPredicted RBP10□□□□□ -0.81
VPS53-212ENST00000572259 WDR62O43379 1518 aa10□□□□□ -0.81
VPS53-212ENST00000572259 USP46P62068 366 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms