RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ABCA6Q8N139 1617 aa13.33□□□□□ -0.27
VPS53-206ENST00000570359 HECW2Q9P2P5 1572 aa13.33□□□□□ -0.27
VPS53-206ENST00000570359 STK26Q9P289 416 aa13.33□□□□□ -0.27
VPS53-206ENST00000570359 MROH2AA6NES4 1674 aa13.33□□□□□ -0.28
VPS53-206ENST00000570359 SCAF11Q99590 1463 aaKnown RBP13.32□□□□□ -0.28
VPS53-206ENST00000570359 FRMPD1Q5SYB0 1578 aa13.32□□□□□ -0.28
VPS53-206ENST00000570359 BRD4O60885 1362 aaPredicted RBP13.32□□□□□ -0.28
VPS53-206ENST00000570359 NUDCQ9Y266 331 aa13.32□□□□□ -0.28
VPS53-206ENST00000570359 KIF1BO60333 1816 aa13.31□□□□□ -0.28
VPS53-206ENST00000570359 VWDEQ8N2E2 1590 aa13.31□□□□□ -0.28
VPS53-206ENST00000570359 PARD3Q8TEW0 1356 aa13.31□□□□□ -0.28
VPS53-206ENST00000570359 RNF17Q9BXT8 1623 aaKnown RBP13.31□□□□□ -0.28
VPS53-206ENST00000570359 FBXO31Q5XUX0 539 aaPredicted RBP13.31□□□□□ -0.28
VPS53-206ENST00000570359 CDCA7LQ96GN5 454 aa13.31□□□□□ -0.28
VPS53-206ENST00000570359 PLPPR3Q6T4P5 718 aa13.3□□□□□ -0.28
VPS53-206ENST00000570359 EIF3AQ14152 1382 aaKnown RBP13.3□□□□□ -0.28
VPS53-206ENST00000570359 STAG3Q9UJ98 1225 aa13.29□□□□□ -0.28
VPS53-206ENST00000570359 CFAP74Q9C0B2 1584 aa13.29□□□□□ -0.28
VPS53-206ENST00000570359 CCDC146Q8IYE0 955 aa13.28□□□□□ -0.28
VPS53-206ENST00000570359 MLH3Q9UHC1 1453 aa13.28□□□□□ -0.28
VPS53-206ENST00000570359 IDI1Q13907 227 aa13.27□□□□□ -0.28
VPS53-206ENST00000570359 CDCA8Q53HL2 280 aa13.27□□□□□ -0.28
VPS53-206ENST00000570359 LAMC1P11047 1609 aa13.27□□□□□ -0.28
VPS53-206ENST00000570359 IQGAP1P46940 1657 aa13.27□□□□□ -0.28
VPS53-206ENST00000570359 WDR43Q15061 677 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS53-206ENST00000570359 PPP2R1AP30153 589 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 ADAMTS8Q9UP79 889 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 MAP3K4Q9Y6R4 1608 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 CENPJQ9HC77 1338 aaPredicted RBP13.26□□□□□ -0.29
VPS53-206ENST00000570359 RIMBP3CA6NJZ7 1639 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 RIMBP3BA6NNM3 1639 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 RIMBP3Q9UFD9 1639 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 ABCC3O15438 1527 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 PPP4R2Q9NY27 417 aa13.26□□□□□ -0.29
VPS53-206ENST00000570359 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
VPS53-206ENST00000570359 AMER1Q5JTC6 1135 aaPredicted RBP13.25□□□□□ -0.29
VPS53-206ENST00000570359 LRPPRCP42704 1394 aaKnown RBP13.25□□□□□ -0.29
VPS53-206ENST00000570359 SMG6Q86US8 1419 aaKnown RBP13.25□□□□□ -0.29
VPS53-206ENST00000570359 DIP2CQ9Y2E4 1556 aa13.24□□□□□ -0.29
VPS53-206ENST00000570359 NEO1Q92859 1461 aa13.24□□□□□ -0.29
VPS53-206ENST00000570359 CARD14Q9BXL6 1004 aa13.23□□□□□ -0.29
VPS53-206ENST00000570359 PLIN1O60240 522 aa13.23□□□□□ -0.29
VPS53-206ENST00000570359 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
VPS53-206ENST00000570359 CABP2Q9NPB3 220 aa13.22□□□□□ -0.29
VPS53-206ENST00000570359 ERVK-7P63135 1459 aa13.21□□□□□ -0.29
VPS53-206ENST00000570359 CAMSAP1Q5T5Y3 1602 aa13.21□□□□□ -0.29
VPS53-206ENST00000570359 ADGRB3O60242 1522 aa13.21□□□□□ -0.29
VPS53-206ENST00000570359 CCDC136Q96JN2 1154 aa13.21□□□□□ -0.29
VPS53-206ENST00000570359 STAC3Q96MF2 364 aa13.21□□□□□ -0.29
VPS53-206ENST00000570359 RBM19Q9Y4C8 960 aaKnown RBP13.21□□□□□ -0.29
VPS53-206ENST00000570359 MYOM2P54296 1465 aa13.21□□□□□ -0.3
VPS53-206ENST00000570359 RICTORQ6R327 1708 aa13.2□□□□□ -0.3
VPS53-206ENST00000570359 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
VPS53-206ENST00000570359 C14orf93Q9H972 538 aaKnown RBP13.2□□□□□ -0.3
VPS53-206ENST00000570359 RCAN3Q9UKA8 241 aa13.2□□□□□ -0.3
VPS53-206ENST00000570359 LMTK2Q8IWU2 1503 aa13.2□□□□□ -0.3
VPS53-206ENST00000570359 KDM5AP29375 1690 aaKnown RBP13.19□□□□□ -0.3
VPS53-206ENST00000570359 VGFO15240 615 aaPredicted RBP13.19□□□□□ -0.3
VPS53-206ENST00000570359 NEUROD2Q15784 382 aa13.19□□□□□ -0.3
VPS53-206ENST00000570359 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
VPS53-206ENST00000570359 BCL11AQ9H165 835 aa13.18□□□□□ -0.3
VPS53-206ENST00000570359 SYNMO15061 1565 aa13.18□□□□□ -0.3
VPS53-206ENST00000570359 PIK3C2GO75747 1445 aa13.18□□□□□ -0.3
VPS53-206ENST00000570359 MORC1Q86VD1 984 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 ANP32EQ9BTT0 268 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 ASXL1Q8IXJ9 1541 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 MYOM1P52179 1685 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 IFT172Q9UG01 1749 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 EXOC6Q8TAG9 804 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 NSD3Q9BZ95 1437 aa13.17□□□□□ -0.3
VPS53-206ENST00000570359 ESF1Q9H501 851 aaKnown RBP13.16□□□□□ -0.3
VPS53-206ENST00000570359 POGKQ9P215 609 aa13.16□□□□□ -0.3
VPS53-206ENST00000570359 PPLO60437 1756 aa13.16□□□□□ -0.3
VPS53-206ENST00000570359 RRP1P56182 461 aaKnown RBP13.15□□□□□ -0.3
VPS53-206ENST00000570359 MYO5BQ9ULV0 1848 aa13.15□□□□□ -0.3
VPS53-206ENST00000570359 APAF1O14727 1248 aa13.15□□□□□ -0.3
VPS53-206ENST00000570359 RRP7AQ9Y3A4 280 aaKnown RBP13.15□□□□□ -0.3
VPS53-206ENST00000570359 PRAM1Q96QH2 718 aa13.15□□□□□ -0.31
VPS53-206ENST00000570359 DIP2BQ9P265 1576 aa13.14□□□□□ -0.31
VPS53-206ENST00000570359 QRICH2Q9H0J4 1663 aa13.13□□□□□ -0.31
VPS53-206ENST00000570359 KIAA1210Q9ULL0 1709 aa13.13□□□□□ -0.31
VPS53-206ENST00000570359 PLEKHH1Q9ULM0 1364 aa13.13□□□□□ -0.31
VPS53-206ENST00000570359 RPGRIP1LQ68CZ1 1315 aa13.12□□□□□ -0.31
VPS53-206ENST00000570359 NRXN1Q9ULB1 1477 aa13.12□□□□□ -0.31
VPS53-206ENST00000570359 EVC2Q86UK5 1308 aa13.12□□□□□ -0.31
VPS53-206ENST00000570359 SLC52A1Q9NWF4 448 aa13.12□□□□□ -0.31
VPS53-206ENST00000570359 GLI2P10070 1586 aa13.11□□□□□ -0.31
VPS53-206ENST00000570359 WAPLQ7Z5K2 1190 aa13.11□□□□□ -0.31
VPS53-206ENST00000570359 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
VPS53-206ENST00000570359 NEXMIFQ5QGS0 1516 aa13.11□□□□□ -0.31
VPS53-206ENST00000570359 PIK3C2BO00750 1634 aa13.1□□□□□ -0.31
VPS53-206ENST00000570359 ADGRB1O14514 1584 aa13.1□□□□□ -0.31
VPS53-206ENST00000570359 BLMP54132 1417 aaPredicted RBP13.1□□□□□ -0.31
VPS53-206ENST00000570359 SKAP1Q86WV1 359 aa13.1□□□□□ -0.31
VPS53-206ENST00000570359 C20orf194Q5TEA3 1177 aa13.09□□□□□ -0.31
VPS53-206ENST00000570359 ERICH6BQ5W0A0 696 aa13.09□□□□□ -0.31
VPS53-206ENST00000570359 MTHFSP49914 203 aa13.09□□□□□ -0.31
VPS53-206ENST00000570359 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
VPS53-206ENST00000570359 PREX1Q8TCU6 1659 aa13.08□□□□□ -0.31
VPS53-206ENST00000570359 DMRT2Q9Y5R5 561 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms