RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ADAMTS12P58397 1594 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 UBE2Q2Q8WVN8 375 aa14.3□□□□□ -0.12
CLN3-238ENST00000569430 C8orf34Q49A92 452 aa14.3□□□□□ -0.12
CLN3-238ENST00000569430 PKNOX2Q96KN3 472 aa14.3□□□□□ -0.12
CLN3-238ENST00000569430 LNPKQ9C0E8 428 aa14.3□□□□□ -0.12
CLN3-238ENST00000569430 ELL2O00472 640 aaPredicted RBP14.3□□□□□ -0.12
CLN3-238ENST00000569430 CALD1Q05682 793 aaKnown RBP14.3□□□□□ -0.12
CLN3-238ENST00000569430 IGHDP01880 384 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 MRE11P49959 708 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 SLFN5Q08AF3 891 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 IPO8O15397 1037 aaKnown RBP14.29□□□□□ -0.12
CLN3-238ENST00000569430 MCM4P33991 863 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 CAMSAP2Q08AD1 1489 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 PBRM1Q86U86 1689 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 ANKRD45Q5TZF3 282 aa14.29□□□□□ -0.12
CLN3-238ENST00000569430 IFT140Q96RY7 1462 aa14.28□□□□□ -0.12
CLN3-238ENST00000569430 TROQ12816 1431 aaPredicted RBP14.28□□□□□ -0.12
CLN3-238ENST00000569430 SRPK2P78362 688 aaKnown RBP14.28□□□□□ -0.12
CLN3-238ENST00000569430 DZIP1LQ8IYY4 767 aaKnown RBP14.28□□□□□ -0.12
CLN3-238ENST00000569430 FAM13BQ9NYF5 915 aa14.28□□□□□ -0.12
CLN3-238ENST00000569430 STK26Q9P289 416 aa14.28□□□□□ -0.12
CLN3-238ENST00000569430 NUTM2DQ5VT03 806 aaPredicted RBP14.27□□□□□ -0.12
CLN3-238ENST00000569430 CASC1Q6TDU7 716 aa14.27□□□□□ -0.12
CLN3-238ENST00000569430 CARMIL2Q6F5E8 1435 aa14.27□□□□□ -0.12
CLN3-238ENST00000569430 TCP11L2Q8N4U5 519 aa14.27□□□□□ -0.13
CLN3-238ENST00000569430 PDE3AQ14432 1141 aa14.27□□□□□ -0.13
CLN3-238ENST00000569430 TCOF1Q13428 1488 aaKnown RBP14.26□□□□□ -0.13
CLN3-238ENST00000569430 GPATCH8Q9UKJ3 1502 aaKnown RBP14.26□□□□□ -0.13
CLN3-238ENST00000569430 TBC1D2Q9BYX2 928 aa14.25□□□□□ -0.13
CLN3-238ENST00000569430 ROCK1Q13464 1354 aa14.25□□□□□ -0.13
CLN3-238ENST00000569430 SEC24BO95487 1268 aa14.25□□□□□ -0.13
CLN3-238ENST00000569430 FOXD4L6Q3SYB3 417 aaPredicted RBP14.25□□□□□ -0.13
CLN3-238ENST00000569430 FOXD4L3Q6VB84 417 aaPredicted RBP14.25□□□□□ -0.13
CLN3-238ENST00000569430 NOL8Q76FK4 1167 aaKnown RBP14.25□□□□□ -0.13
CLN3-238ENST00000569430 PANK2Q9BZ23 570 aa14.25□□□□□ -0.13
CLN3-238ENST00000569430 KIF14Q15058 1648 aa14.25□□□□□ -0.13
CLN3-238ENST00000569430 KIF3BO15066 747 aa14.24□□□□□ -0.13
CLN3-238ENST00000569430 PTPRGP23470 1445 aa14.23□□□□□ -0.13
CLN3-238ENST00000569430 KIAA0556O60303 1618 aa14.23□□□□□ -0.13
CLN3-238ENST00000569430 GRPEL1Q9HAV7 217 aa14.23□□□□□ -0.13
CLN3-238ENST00000569430 ESPNB1AK53 854 aa14.23□□□□□ -0.13
CLN3-238ENST00000569430 RUNDC1Q96C34 613 aa14.22□□□□□ -0.13
CLN3-238ENST00000569430 EIF3AQ14152 1382 aaKnown RBP14.22□□□□□ -0.13
CLN3-238ENST00000569430 PZPP20742 1482 aa14.22□□□□□ -0.13
CLN3-238ENST00000569430 RSPH4AQ5TD94 716 aa14.22□□□□□ -0.13
CLN3-238ENST00000569430 RBM10P98175 930 aaKnown RBP14.22□□□□□ -0.13
CLN3-238ENST00000569430 C9orf84Q5VXU9 1444 aa14.21□□□□□ -0.13
CLN3-238ENST00000569430 TSR2Q969E8 191 aaKnown RBP14.21□□□□□ -0.13
CLN3-238ENST00000569430 EIF4G3O43432 1585 aaKnown RBP14.21□□□□□ -0.13
CLN3-238ENST00000569430 SKOR2Q2VWA4 1001 aaPredicted RBP14.21□□□□□ -0.14
CLN3-238ENST00000569430 TEX14Q8IWB6 1497 aa14.21□□□□□ -0.14
CLN3-238ENST00000569430 XRCC6P12956 609 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLN3-238ENST00000569430 MTHFSP49914 203 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 GGT6Q6P531 493 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 CHMP4BQ9H444 224 aaKnown RBP14.2□□□□□ -0.14
CLN3-238ENST00000569430 ERBINQ96RT1 1412 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 RAPGEF6Q8TEU7 1601 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 PTMSP20962 102 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 CFAP70Q5T0N1 1121 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 DDX19BQ9UMR2 479 aa14.2□□□□□ -0.14
CLN3-238ENST00000569430 NPM1P06748 294 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLN3-238ENST00000569430 NASPP49321 788 aaPredicted RBP14.19□□□□□ -0.14
CLN3-238ENST00000569430 AFAP1Q8N556 730 aa14.19□□□□□ -0.14
CLN3-238ENST00000569430 RRAGDQ9NQL2 400 aaPredicted RBP14.19□□□□□ -0.14
CLN3-238ENST00000569430 EFCAB2Q5VUJ9 269 aa14.19□□□□□ -0.14
CLN3-238ENST00000569430 R3HCC1Q9Y3T6 440 aaKnown RBP14.19□□□□□ -0.14
CLN3-238ENST00000569430 WWC1Q8IX03 1113 aa14.19□□□□□ -0.14
CLN3-238ENST00000569430 LRPPRCP42704 1394 aaKnown RBP14.19□□□□□ -0.14
CLN3-238ENST00000569430 DISP3Q9P2K9 1392 aa14.18□□□□□ -0.14
CLN3-238ENST00000569430 MCTP1Q6DN14 999 aa14.18□□□□□ -0.14
CLN3-238ENST00000569430 ATP10BO94823 1461 aa14.18□□□□□ -0.14
CLN3-238ENST00000569430 NGEFQ8N5V2 710 aa14.17□□□□□ -0.14
CLN3-238ENST00000569430 KANK1Q14678 1352 aa14.17□□□□□ -0.14
CLN3-238ENST00000569430 PER1O15534 1290 aaPredicted RBP14.17□□□□□ -0.14
CLN3-238ENST00000569430 EXOSC9Q06265 439 aaKnown RBP14.17□□□□□ -0.14
CLN3-238ENST00000569430 CEP170Q5SW79 1584 aa14.17□□□□□ -0.14
CLN3-238ENST00000569430 SPINK5Q9NQ38 1064 aaPredicted RBP14.16□□□□□ -0.14
CLN3-238ENST00000569430 SLC12A5Q9H2X9 1139 aa14.16□□□□□ -0.14
CLN3-238ENST00000569430 SPATA31E1Q6ZUB1 1445 aa14.16□□□□□ -0.14
CLN3-238ENST00000569430 PLEKHH1Q9ULM0 1364 aa14.16□□□□□ -0.14
CLN3-238ENST00000569430 SOX12O15370 315 aa14.16□□□□□ -0.14
CLN3-238ENST00000569430 PARD3Q8TEW0 1356 aa14.15□□□□□ -0.14
CLN3-238ENST00000569430 SPAG9O60271 1321 aaKnown RBP14.15□□□□□ -0.14
CLN3-238ENST00000569430 SYNJ2O15056 1496 aa14.15□□□□□ -0.14
CLN3-238ENST00000569430 CAVIN1Q6NZI2 390 aaKnown RBP14.15□□□□□ -0.14
CLN3-238ENST00000569430 RNF214Q8ND24 703 aa14.15□□□□□ -0.14
CLN3-238ENST00000569430 PCDHB15Q9Y5E8 787 aa14.15□□□□□ -0.14
CLN3-238ENST00000569430 RIPK4P57078 832 aa14.15□□□□□ -0.15
CLN3-238ENST00000569430 KIAA2012Q0VF49 1180 aa14.15□□□□□ -0.15
CLN3-238ENST00000569430 KIAA1211Q6ZU35 1233 aa14.15□□□□□ -0.15
CLN3-238ENST00000569430 TNNQ9UQP3 1299 aa14.15□□□□□ -0.15
CLN3-238ENST00000569430 C1orf115Q9H7X2 142 aa14.14□□□□□ -0.15
CLN3-238ENST00000569430 GCC2Q8IWJ2 1684 aa14.14□□□□□ -0.15
CLN3-238ENST00000569430 RARSP54136 660 aaKnown RBP14.14□□□□□ -0.15
CLN3-238ENST00000569430 ZMYND15Q9H091 742 aa14.14□□□□□ -0.15
CLN3-238ENST00000569430 MAGI1Q96QZ7 1491 aaPredicted RBP14.14□□□□□ -0.15
CLN3-238ENST00000569430 KDM2BQ8NHM5 1336 aa14.14□□□□□ -0.15
CLN3-238ENST00000569430 AMER1Q5JTC6 1135 aaPredicted RBP14.14□□□□□ -0.15
CLN3-238ENST00000569430 RRP9O43818 475 aaKnown RBP14.13□□□□□ -0.15
CLN3-238ENST00000569430 TMEM132EQ6IEE7 984 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms