RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 PPP1R15AO75807 674 aaPredicted RBP13.43□□□□□ -0.26
GTF3C1-210ENST00000569394 ZNF326Q5BKZ1 582 aaKnown RBP13.43□□□□□ -0.26
GTF3C1-210ENST00000569394 ILDR2Q71H61 639 aa13.43□□□□□ -0.26
GTF3C1-210ENST00000569394 SETD5Q9C0A6 1442 aa13.43□□□□□ -0.26
GTF3C1-210ENST00000569394 SPHKAPQ2M3C7 1700 aa13.42□□□□□ -0.26
GTF3C1-210ENST00000569394 SLC26A8Q96RN1 970 aa13.42□□□□□ -0.26
GTF3C1-210ENST00000569394 ADGRB3O60242 1522 aa13.42□□□□□ -0.26
GTF3C1-210ENST00000569394 TMEM2Q9UHN6 1383 aa13.42□□□□□ -0.26
GTF3C1-210ENST00000569394 SCAF11Q99590 1463 aaKnown RBP13.42□□□□□ -0.26
GTF3C1-210ENST00000569394 IQGAP1P46940 1657 aa13.41□□□□□ -0.26
GTF3C1-210ENST00000569394 MPHOSPH9Q99550 1183 aa13.41□□□□□ -0.26
GTF3C1-210ENST00000569394 RAB3GAP2Q9H2M9 1393 aa13.41□□□□□ -0.26
GTF3C1-210ENST00000569394 TMEM131LA2VDJ0 1609 aa13.39□□□□□ -0.27
GTF3C1-210ENST00000569394 LTBP4Q8N2S1 1624 aa13.39□□□□□ -0.27
GTF3C1-210ENST00000569394 RIMS2Q9UQ26 1411 aa13.39□□□□□ -0.27
GTF3C1-210ENST00000569394 ARHGAP23Q9P227 1491 aa13.38□□□□□ -0.27
GTF3C1-210ENST00000569394 RBM33Q96EV2 1170 aaKnown RBP13.38□□□□□ -0.27
GTF3C1-210ENST00000569394 CLTCL1P53675 1640 aa13.38□□□□□ -0.27
GTF3C1-210ENST00000569394 SLIT1O75093 1534 aa13.38□□□□□ -0.27
GTF3C1-210ENST00000569394 RGL3Q3MIN7 710 aa13.36□□□□□ -0.27
GTF3C1-210ENST00000569394 MED14O60244 1454 aa13.36□□□□□ -0.27
GTF3C1-210ENST00000569394 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
GTF3C1-210ENST00000569394 STRCP1A6NGW2 1772 aa13.34□□□□□ -0.27
GTF3C1-210ENST00000569394 KIF1BO60333 1816 aa13.34□□□□□ -0.27
GTF3C1-210ENST00000569394 KDM5AP29375 1690 aaKnown RBP13.34□□□□□ -0.27
GTF3C1-210ENST00000569394 UBAP1LF5GYI3 381 aa13.33□□□□□ -0.28
GTF3C1-210ENST00000569394 TRPM2O94759 1503 aa13.33□□□□□ -0.28
GTF3C1-210ENST00000569394 ZFYVE9O95405 1425 aa13.32□□□□□ -0.28
GTF3C1-210ENST00000569394 PIP4K2BP78356 416 aa13.32□□□□□ -0.28
GTF3C1-210ENST00000569394 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.31□□□□□ -0.28
GTF3C1-210ENST00000569394 PROSER2Q86WR7 435 aaPredicted RBP13.29□□□□□ -0.28
GTF3C1-210ENST00000569394 PLEKHG1Q9ULL1 1385 aa13.29□□□□□ -0.28
GTF3C1-210ENST00000569394 CCDC144AA2RUR9 1427 aa13.29□□□□□ -0.28
GTF3C1-210ENST00000569394 IQSEC2Q5JU85 1478 aa13.29□□□□□ -0.28
GTF3C1-210ENST00000569394 CPS1P31327 1500 aa13.27□□□□□ -0.29
GTF3C1-210ENST00000569394 LRRC7Q96NW7 1537 aa13.26□□□□□ -0.29
GTF3C1-210ENST00000569394 NEXMIFQ5QGS0 1516 aa13.25□□□□□ -0.29
GTF3C1-210ENST00000569394 KCNA6P17658 529 aa13.25□□□□□ -0.29
GTF3C1-210ENST00000569394 C14orf37Q86TY3 774 aa13.25□□□□□ -0.29
GTF3C1-210ENST00000569394 ADAMTS13Q76LX8 1427 aa13.24□□□□□ -0.29
GTF3C1-210ENST00000569394 AMOTL2Q9Y2J4 779 aa13.23□□□□□ -0.29
GTF3C1-210ENST00000569394 TBX22Q9Y458 520 aa13.23□□□□□ -0.29
GTF3C1-210ENST00000569394 TMEM94Q12767 1356 aa13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 ADGRF5Q8IZF2 1346 aa13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 VGFO15240 615 aaPredicted RBP13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 TOM1O60784 492 aa13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 TRIM26Q12899 539 aaPredicted RBP13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 RNF216Q9NWF9 866 aaPredicted RBP13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 KDM2AQ9Y2K7 1162 aa13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 XIRP1Q702N8 1843 aaKnown RBP13.22□□□□□ -0.29
GTF3C1-210ENST00000569394 CHD2O14647 1828 aaKnown RBP13.21□□□□□ -0.29
GTF3C1-210ENST00000569394 PPLO60437 1756 aa13.21□□□□□ -0.29
GTF3C1-210ENST00000569394 NRXN3Q9Y4C0 1643 aa13.21□□□□□ -0.3
GTF3C1-210ENST00000569394 METP08581 1390 aa13.2□□□□□ -0.3
GTF3C1-210ENST00000569394 ACIN1Q9UKV3 1341 aaKnown RBP13.2□□□□□ -0.3
GTF3C1-210ENST00000569394 PTPRUQ92729 1446 aa13.2□□□□□ -0.3
GTF3C1-210ENST00000569394 STK26Q9P289 416 aa13.19□□□□□ -0.3
GTF3C1-210ENST00000569394 RPGRIP1LQ68CZ1 1315 aa13.18□□□□□ -0.3
GTF3C1-210ENST00000569394 HRCP23327 699 aa13.18□□□□□ -0.3
GTF3C1-210ENST00000569394 TMEM132EQ6IEE7 984 aa13.18□□□□□ -0.3
GTF3C1-210ENST00000569394 SPATA31E1Q6ZUB1 1445 aa13.18□□□□□ -0.3
GTF3C1-210ENST00000569394 ANKRD30BQ9BXX2 1392 aa13.18□□□□□ -0.3
GTF3C1-210ENST00000569394 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
GTF3C1-210ENST00000569394 NEUROD1Q13562 356 aa13.17□□□□□ -0.3
GTF3C1-210ENST00000569394 FOXD4L1Q9NU39 408 aa13.17□□□□□ -0.3
GTF3C1-210ENST00000569394 DIP2AQ14689 1571 aa13.16□□□□□ -0.3
GTF3C1-210ENST00000569394 NWD1Q149M9 1564 aa13.16□□□□□ -0.3
GTF3C1-210ENST00000569394 HSPA1LP34931 641 aa13.16□□□□□ -0.3
GTF3C1-210ENST00000569394 DCAF11Q8TEB1 546 aa13.16□□□□□ -0.3
GTF3C1-210ENST00000569394 SIN3AQ96ST3 1273 aa13.16□□□□□ -0.3
GTF3C1-210ENST00000569394 ALKQ9UM73 1620 aa13.15□□□□□ -0.3
GTF3C1-210ENST00000569394 IFT172Q9UG01 1749 aa13.15□□□□□ -0.3
GTF3C1-210ENST00000569394 MSH6P52701 1360 aa13.15□□□□□ -0.3
GTF3C1-210ENST00000569394 CFAP70Q5T0N1 1121 aa13.14□□□□□ -0.31
GTF3C1-210ENST00000569394 PCGF6Q9BYE7 350 aa13.14□□□□□ -0.31
GTF3C1-210ENST00000569394 NKTRP30414 1462 aaKnown RBP13.14□□□□□ -0.31
GTF3C1-210ENST00000569394 ATF3P18847 181 aa13.12□□□□□ -0.31
GTF3C1-210ENST00000569394 SETD1AO15047 1707 aaKnown RBP13.11□□□□□ -0.31
GTF3C1-210ENST00000569394 PIK3R4Q99570 1358 aa13.11□□□□□ -0.31
GTF3C1-210ENST00000569394 XRN1Q8IZH2 1706 aaKnown RBP13.1□□□□□ -0.31
GTF3C1-210ENST00000569394 SAFB2Q14151 953 aaKnown RBP eCLIP13.1□□□□□ -0.31
GTF3C1-210ENST00000569394 WAPLQ7Z5K2 1190 aa13.1□□□□□ -0.31
GTF3C1-210ENST00000569394 ROBO2Q9HCK4 1378 aa13.09□□□□□ -0.31
GTF3C1-210ENST00000569394 NUTM2FA1L443 756 aa13.09□□□□□ -0.31
GTF3C1-210ENST00000569394 SLAIN2Q9P270 581 aa13.09□□□□□ -0.31
GTF3C1-210ENST00000569394 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.09□□□□□ -0.31
GTF3C1-210ENST00000569394 PIK3C2GO75747 1445 aa13.08□□□□□ -0.32
GTF3C1-210ENST00000569394 C19orf44Q9H6X5 657 aa13.08□□□□□ -0.32
GTF3C1-210ENST00000569394 DHX57Q6P158 1386 aaKnown RBP13.07□□□□□ -0.32
GTF3C1-210ENST00000569394 C14orf93Q9H972 538 aaKnown RBP13.07□□□□□ -0.32
GTF3C1-210ENST00000569394 ROBO1Q9Y6N7 1651 aa13.07□□□□□ -0.32
GTF3C1-210ENST00000569394 PLEKHH1Q9ULM0 1364 aa13.07□□□□□ -0.32
GTF3C1-210ENST00000569394 TRAK1Q9UPV9 953 aa13.06□□□□□ -0.32
GTF3C1-210ENST00000569394 ASXL1Q8IXJ9 1541 aa13.06□□□□□ -0.32
GTF3C1-210ENST00000569394 NALCNQ8IZF0 1738 aa13.05□□□□□ -0.32
GTF3C1-210ENST00000569394 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
GTF3C1-210ENST00000569394 CADPS2Q86UW7 1296 aa13.05□□□□□ -0.32
GTF3C1-210ENST00000569394 DDX17Q92841 729 aaKnown RBP13.05□□□□□ -0.32
GTF3C1-210ENST00000569394 MYOM2P54296 1465 aa13.04□□□□□ -0.32
GTF3C1-210ENST00000569394 YTHDC2Q9H6S0 1430 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms