RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 ZFYVE9O95405 1425 aa24.35■■□□□ 1.49
COMMD4-224ENST00000568877 LTKP29376 864 aa24.35■■□□□ 1.49
COMMD4-224ENST00000568877 CCER1Q8TC90 406 aaPredicted RBP24.35■■□□□ 1.49
COMMD4-224ENST00000568877 RPGRIP1LQ68CZ1 1315 aa24.35■■□□□ 1.49
COMMD4-224ENST00000568877 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.34■■□□□ 1.49
COMMD4-224ENST00000568877 NEUROD1Q13562 356 aa24.33■■□□□ 1.49
COMMD4-224ENST00000568877 SCAF11Q99590 1463 aaKnown RBP24.32■■□□□ 1.48
COMMD4-224ENST00000568877 CLSPNQ9HAW4 1339 aa24.32■■□□□ 1.48
COMMD4-224ENST00000568877 STRCQ7RTU9 1775 aa24.31■■□□□ 1.48
COMMD4-224ENST00000568877 PPP1R15AO75807 674 aaPredicted RBP24.3■■□□□ 1.48
COMMD4-224ENST00000568877 NUTM2DQ5VT03 806 aaPredicted RBP24.3■■□□□ 1.48
COMMD4-224ENST00000568877 NEXMIFQ5QGS0 1516 aa24.3■■□□□ 1.48
COMMD4-224ENST00000568877 POLR1AO95602 1720 aaPredicted RBP24.27■■□□□ 1.48
COMMD4-224ENST00000568877 MED14O60244 1454 aa24.27■■□□□ 1.48
COMMD4-224ENST00000568877 VGFO15240 615 aaPredicted RBP24.26■■□□□ 1.47
COMMD4-224ENST00000568877 DMRT2Q9Y5R5 561 aa24.26■■□□□ 1.47
COMMD4-224ENST00000568877 NPHP4O75161 1426 aaPredicted RBP24.26■■□□□ 1.47
COMMD4-224ENST00000568877 PLEKHG1Q9ULL1 1385 aa24.24■■□□□ 1.47
COMMD4-224ENST00000568877 DCAF11Q8TEB1 546 aa24.23■■□□□ 1.47
COMMD4-224ENST00000568877 PPLO60437 1756 aa24.23■■□□□ 1.47
COMMD4-224ENST00000568877 BCANQ96GW7 911 aa24.22■■□□□ 1.47
COMMD4-224ENST00000568877 IFT172Q9UG01 1749 aa24.21■■□□□ 1.47
COMMD4-224ENST00000568877 L3MBTL2Q969R5 705 aa24.2■■□□□ 1.46
COMMD4-224ENST00000568877 STAC3Q96MF2 364 aa24.2■■□□□ 1.46
COMMD4-224ENST00000568877 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
COMMD4-224ENST00000568877 ADGRF5Q8IZF2 1346 aa24.19■■□□□ 1.46
COMMD4-224ENST00000568877 IQGAP1P46940 1657 aa24.19■■□□□ 1.46
COMMD4-224ENST00000568877 KDM2AQ9Y2K7 1162 aa24.19■■□□□ 1.46
COMMD4-224ENST00000568877 MYOM2P54296 1465 aa24.18■■□□□ 1.46
COMMD4-224ENST00000568877 TONSLQ96HA7 1378 aa24.16■■□□□ 1.46
COMMD4-224ENST00000568877 SLC26A8Q96RN1 970 aa24.16■■□□□ 1.46
COMMD4-224ENST00000568877 SETBP1Q9Y6X0 1596 aa24.14■■□□□ 1.45
COMMD4-224ENST00000568877 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
COMMD4-224ENST00000568877 ADAMTS13Q76LX8 1427 aa24.13■■□□□ 1.45
COMMD4-224ENST00000568877 TBX22Q9Y458 520 aa24.13■■□□□ 1.45
COMMD4-224ENST00000568877 PIK3C2GO75747 1445 aa24.11■■□□□ 1.45
COMMD4-224ENST00000568877 NRXN3Q9Y4C0 1643 aa24.1■■□□□ 1.45
COMMD4-224ENST00000568877 TIMELESSQ9UNS1 1208 aa24.1■■□□□ 1.45
COMMD4-224ENST00000568877 DIP2AQ14689 1571 aa24.08■■□□□ 1.45
COMMD4-224ENST00000568877 C14orf93Q9H972 538 aaKnown RBP24.07■■□□□ 1.44
COMMD4-224ENST00000568877 ALKQ9UM73 1620 aa24.06■■□□□ 1.44
COMMD4-224ENST00000568877 PRAG1Q86YV5 1406 aa24.05■■□□□ 1.44
COMMD4-224ENST00000568877 CFAP70Q5T0N1 1121 aa24.04■■□□□ 1.44
COMMD4-224ENST00000568877 METP08581 1390 aa24.03■■□□□ 1.44
COMMD4-224ENST00000568877 PIK3R4Q99570 1358 aa24.03■■□□□ 1.44
COMMD4-224ENST00000568877 ZNF335Q9H4Z2 1342 aaPredicted RBP24.03■■□□□ 1.44
COMMD4-224ENST00000568877 KCNA6P17658 529 aa24■■□□□ 1.43
COMMD4-224ENST00000568877 SETD1AO15047 1707 aaKnown RBP24■■□□□ 1.43
COMMD4-224ENST00000568877 LAMC1P11047 1609 aa23.99■■□□□ 1.43
COMMD4-224ENST00000568877 NBPF8Q3BBV2 869 aa23.98■■□□□ 1.43
COMMD4-224ENST00000568877 TMEM132EQ6IEE7 984 aa23.98■■□□□ 1.43
COMMD4-224ENST00000568877 PTPRUQ92729 1446 aa23.97■■□□□ 1.43
COMMD4-224ENST00000568877 AMOTL2Q9Y2J4 779 aa23.96■■□□□ 1.43
COMMD4-224ENST00000568877 ASXL1Q8IXJ9 1541 aa23.94■■□□□ 1.42
COMMD4-224ENST00000568877 NWD1Q149M9 1564 aa23.94■■□□□ 1.42
COMMD4-224ENST00000568877 CHD2O14647 1828 aaKnown RBP23.94■■□□□ 1.42
COMMD4-224ENST00000568877 NBPF1Q3BBV0 1214 aa23.93■■□□□ 1.42
COMMD4-224ENST00000568877 KIAA1210Q9ULL0 1709 aa23.93■■□□□ 1.42
COMMD4-224ENST00000568877 LTBP4Q8N2S1 1624 aa23.92■■□□□ 1.42
COMMD4-224ENST00000568877 ADGRB1O14514 1584 aa23.92■■□□□ 1.42
COMMD4-224ENST00000568877 LRPPRCP42704 1394 aaKnown RBP23.91■■□□□ 1.42
COMMD4-224ENST00000568877 STRCP1A6NGW2 1772 aa23.91■■□□□ 1.42
COMMD4-224ENST00000568877 STK26Q9P289 416 aa23.91■■□□□ 1.42
COMMD4-224ENST00000568877 YTHDC2Q9H6S0 1430 aaKnown RBP23.91■■□□□ 1.42
COMMD4-224ENST00000568877 CPS1P31327 1500 aa23.9■■□□□ 1.42
COMMD4-224ENST00000568877 NKTRP30414 1462 aaKnown RBP23.89■■□□□ 1.42
COMMD4-224ENST00000568877 TRPM1Q7Z4N2 1603 aa23.89■■□□□ 1.42
COMMD4-224ENST00000568877 XRN1Q8IZH2 1706 aaKnown RBP23.89■■□□□ 1.41
COMMD4-224ENST00000568877 ABCC11Q96J66 1382 aa23.89■■□□□ 1.41
COMMD4-224ENST00000568877 PROSER2Q86WR7 435 aaPredicted RBP23.87■■□□□ 1.41
COMMD4-224ENST00000568877 ROCK2O75116 1388 aaKnown RBP23.87■■□□□ 1.41
COMMD4-224ENST00000568877 TECPR2O15040 1411 aa23.86■■□□□ 1.41
COMMD4-224ENST00000568877 RALGAPBQ86X10 1494 aa23.86■■□□□ 1.41
COMMD4-224ENST00000568877 PTCH1Q13635 1447 aa23.84■■□□□ 1.41
COMMD4-224ENST00000568877 LRRC7Q96NW7 1537 aa23.84■■□□□ 1.41
COMMD4-224ENST00000568877 ROBO2Q9HCK4 1378 aa23.84■■□□□ 1.41
COMMD4-224ENST00000568877 TRAK1Q9UPV9 953 aa23.84■■□□□ 1.41
COMMD4-224ENST00000568877 GPRASP1Q5JY77 1395 aa23.83■■□□□ 1.41
COMMD4-224ENST00000568877 SIRT1Q96EB6 747 aa23.83■■□□□ 1.41
COMMD4-224ENST00000568877 RBM33Q96EV2 1170 aaKnown RBP23.82■■□□□ 1.4
COMMD4-224ENST00000568877 TMEM94Q12767 1356 aa23.81■■□□□ 1.4
COMMD4-224ENST00000568877 KNDC1Q76NI1 1749 aa23.81■■□□□ 1.4
COMMD4-224ENST00000568877 CERKQ8TCT0 537 aa23.8■■□□□ 1.4
COMMD4-224ENST00000568877 CARD11Q9BXL7 1154 aa23.8■■□□□ 1.4
COMMD4-224ENST00000568877 DLC1Q96QB1 1528 aa23.79■■□□□ 1.4
COMMD4-224ENST00000568877 FAM135BQ49AJ0 1406 aa23.79■■□□□ 1.4
COMMD4-224ENST00000568877 WAPLQ7Z5K2 1190 aa23.79■■□□□ 1.4
COMMD4-224ENST00000568877 NCOA3Q9Y6Q9 1424 aa23.78■■□□□ 1.4
COMMD4-224ENST00000568877 PRAM1Q96QH2 718 aa23.77■■□□□ 1.4
COMMD4-224ENST00000568877 POGKQ9P215 609 aa23.76■■□□□ 1.39
COMMD4-224ENST00000568877 PLEKHH1Q9ULM0 1364 aa23.76■■□□□ 1.39
COMMD4-224ENST00000568877 C14orf37Q86TY3 774 aa23.75■■□□□ 1.39
COMMD4-224ENST00000568877 IQSEC2Q5JU85 1478 aa23.73■■□□□ 1.39
COMMD4-224ENST00000568877 SAFB2Q14151 953 aaKnown RBP eCLIP23.72■■□□□ 1.39
COMMD4-224ENST00000568877 XIRP1Q702N8 1843 aaKnown RBP23.72■■□□□ 1.39
COMMD4-224ENST00000568877 ARHGEF28Q8N1W1 1705 aaKnown RBP23.71■■□□□ 1.39
COMMD4-224ENST00000568877 C19orf44Q9H6X5 657 aa23.71■■□□□ 1.39
COMMD4-224ENST00000568877 MSH6P52701 1360 aa23.7■■□□□ 1.38
COMMD4-224ENST00000568877 EIF3AQ14152 1382 aaKnown RBP23.7■■□□□ 1.38
COMMD4-224ENST00000568877 ADGRL3Q9HAR2 1447 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms