RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	CHIC2	Q9UKJ5	165 aa		12.85	□□□□□ -0.35
TSC2-223	ENST00000568566	ITGAE	P38570	1179 aa		12.84	□□□□□ -0.35
TSC2-223	ENST00000568566	MSH6	P52701	1360 aa		12.83	□□□□□ -0.36
TSC2-223	ENST00000568566	NOS1	P29475	1434 aa		12.83	□□□□□ -0.36
TSC2-223	ENST00000568566	BCAN	Q96GW7	911 aa		12.83	□□□□□ -0.36
TSC2-223	ENST00000568566	ANKRD30A	Q9BXX3	1397 aa		12.81	□□□□□ -0.36
TSC2-223	ENST00000568566	MYO5B	Q9ULV0	1848 aa		12.81	□□□□□ -0.36
TSC2-223	ENST00000568566	JCAD	Q9P266	1359 aa		12.81	□□□□□ -0.36
TSC2-223	ENST00000568566	SLAIN2	Q9P270	581 aa		12.8	□□□□□ -0.36
TSC2-223	ENST00000568566	COL16A1	Q07092	1604 aa	Predicted RBP	12.8	□□□□□ -0.36
TSC2-223	ENST00000568566	GCC2	Q8IWJ2	1684 aa		12.79	□□□□□ -0.36
TSC2-223	ENST00000568566	ZFYVE9	O95405	1425 aa		12.79	□□□□□ -0.36
TSC2-223	ENST00000568566	LRP6	O75581	1613 aa		12.78	□□□□□ -0.36
TSC2-223	ENST00000568566	PPP1R15A	O75807	674 aa	Predicted RBP	12.78	□□□□□ -0.36
TSC2-223	ENST00000568566	CHD2	O14647	1828 aa	Known RBP	12.78	□□□□□ -0.36
TSC2-223	ENST00000568566	PLEKHG1	Q9ULL1	1385 aa		12.78	□□□□□ -0.36
TSC2-223	ENST00000568566	SLC52A1	Q9NWF4	448 aa		12.77	□□□□□ -0.37
TSC2-223	ENST00000568566	RRBP1	Q9P2E9	1410 aa	Known RBP	12.77	□□□□□ -0.37
TSC2-223	ENST00000568566	RIMS2	Q9UQ26	1411 aa		12.77	□□□□□ -0.37
TSC2-223	ENST00000568566	C14orf37	Q86TY3	774 aa		12.76	□□□□□ -0.37
TSC2-223	ENST00000568566	RPRD2	Q5VT52	1461 aa	Known RBP	12.76	□□□□□ -0.37
TSC2-223	ENST00000568566	TMEM131L	A2VDJ0	1609 aa		12.75	□□□□□ -0.37
TSC2-223	ENST00000568566	ADGRL2	O95490	1459 aa		12.75	□□□□□ -0.37
TSC2-223	ENST00000568566	MEX3C	Q5U5Q3	659 aa	Known RBP	12.75	□□□□□ -0.37
TSC2-223	ENST00000568566	TRIM52	Q96A61	297 aa		12.73	□□□□□ -0.37
TSC2-223	ENST00000568566	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	12.73	□□□□□ -0.37
TSC2-223	ENST00000568566	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.73	□□□□□ -0.37
TSC2-223	ENST00000568566	ANKRD50	Q9ULJ7	1429 aa		12.72	□□□□□ -0.37
TSC2-223	ENST00000568566	SPATA31A6	Q5VVP1	1343 aa		12.72	□□□□□ -0.37
TSC2-223	ENST00000568566	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.72	□□□□□ -0.37
TSC2-223	ENST00000568566	SHPRH	Q149N8	1683 aa		12.72	□□□□□ -0.37
TSC2-223	ENST00000568566	ADAMTS13	Q76LX8	1427 aa		12.71	□□□□□ -0.37
TSC2-223	ENST00000568566	CHGA	P10645	457 aa	Known RBP	12.71	□□□□□ -0.37
TSC2-223	ENST00000568566	NCOA3	Q9Y6Q9	1424 aa		12.71	□□□□□ -0.38
TSC2-223	ENST00000568566	DIP2A	Q14689	1571 aa		12.7	□□□□□ -0.38
TSC2-223	ENST00000568566	ZNF772	Q68DY9	489 aa	Predicted RBP	12.7	□□□□□ -0.38
TSC2-223	ENST00000568566	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.7	□□□□□ -0.38
TSC2-223	ENST00000568566	TBX22	Q9Y458	520 aa		12.7	□□□□□ -0.38
TSC2-223	ENST00000568566	UNC13B	O14795	1591 aa		12.69	□□□□□ -0.38
TSC2-223	ENST00000568566	ATF3	P18847	181 aa		12.69	□□□□□ -0.38
TSC2-223	ENST00000568566	HDGF	P51858	240 aa	Known RBP	12.69	□□□□□ -0.38
TSC2-223	ENST00000568566		E9PCH4	1651 aa		12.68	□□□□□ -0.38
TSC2-223	ENST00000568566	CADPS2	Q86UW7	1296 aa		12.68	□□□□□ -0.38
TSC2-223	ENST00000568566	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
TSC2-223	ENST00000568566	TRPM2	O94759	1503 aa		12.67	□□□□□ -0.38
TSC2-223	ENST00000568566	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.67	□□□□□ -0.38
TSC2-223	ENST00000568566	NUTM2E	B1AL46	878 aa	Predicted RBP	12.67	□□□□□ -0.38
TSC2-223	ENST00000568566	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.67	□□□□□ -0.38
TSC2-223	ENST00000568566	C19orf44	Q9H6X5	657 aa		12.67	□□□□□ -0.38
TSC2-223	ENST00000568566	PTPRU	Q92729	1446 aa		12.66	□□□□□ -0.38
TSC2-223	ENST00000568566	BRINP3	Q76B58	766 aa		12.66	□□□□□ -0.38
TSC2-223	ENST00000568566	ASXL1	Q8IXJ9	1541 aa		12.66	□□□□□ -0.38
TSC2-223	ENST00000568566	PIK3R4	Q99570	1358 aa		12.66	□□□□□ -0.38
TSC2-223	ENST00000568566	RXRB	P28702	533 aa		12.65	□□□□□ -0.38
TSC2-223	ENST00000568566	AMOTL2	Q9Y2J4	779 aa		12.64	□□□□□ -0.39
TSC2-223	ENST00000568566	SRCAP	Q6ZRS2	3230 aa		12.64	□□□□□ -0.39
TSC2-223	ENST00000568566	AFF2	P51816	1311 aa		12.63	□□□□□ -0.39
TSC2-223	ENST00000568566	IQGAP3	Q86VI3	1631 aa		12.63	□□□□□ -0.39
TSC2-223	ENST00000568566	XRN1	Q8IZH2	1706 aa	Known RBP	12.63	□□□□□ -0.39
TSC2-223	ENST00000568566	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.63	□□□□□ -0.39
TSC2-223	ENST00000568566	DCC	P43146	1447 aa		12.62	□□□□□ -0.39
TSC2-223	ENST00000568566	NRXN3	Q9Y4C0	1643 aa		12.62	□□□□□ -0.39
TSC2-223	ENST00000568566	NHSL1	Q5SYE7	1610 aa		12.62	□□□□□ -0.39
TSC2-223	ENST00000568566	MST1R	Q04912	1400 aa		12.62	□□□□□ -0.39
TSC2-223	ENST00000568566	RGS12	O14924	1447 aa		12.61	□□□□□ -0.39
TSC2-223	ENST00000568566	SETD5	Q9C0A6	1442 aa		12.61	□□□□□ -0.39
TSC2-223	ENST00000568566	ROCK1	Q13464	1354 aa		12.6	□□□□□ -0.39
TSC2-223	ENST00000568566	NAIP	Q13075	1403 aa		12.6	□□□□□ -0.39
TSC2-223	ENST00000568566	SETBP1	Q9Y6X0	1596 aa		12.6	□□□□□ -0.39
TSC2-223	ENST00000568566	DDX17	Q92841	729 aa	Known RBP	12.59	□□□□□ -0.39
TSC2-223	ENST00000568566	C8orf37	Q96NL8	207 aa		12.59	□□□□□ -0.39
TSC2-223	ENST00000568566	NUP155	O75694	1391 aa		12.58	□□□□□ -0.4
TSC2-223	ENST00000568566	MET	P08581	1390 aa		12.57	□□□□□ -0.4
TSC2-223	ENST00000568566	PNPLA6	Q8IY17	1366 aa		12.57	□□□□□ -0.4
TSC2-223	ENST00000568566	NALCN	Q8IZF0	1738 aa		12.57	□□□□□ -0.4
TSC2-223	ENST00000568566	ADGRL3	Q9HAR2	1447 aa		12.57	□□□□□ -0.4
TSC2-223	ENST00000568566	SPHKAP	Q2M3C7	1700 aa		12.57	□□□□□ -0.4
TSC2-223	ENST00000568566	ZNF326	Q5BKZ1	582 aa	Known RBP	12.56	□□□□□ -0.4
TSC2-223	ENST00000568566	LRRC59	Q96AG4	307 aa	Known RBP	12.56	□□□□□ -0.4
TSC2-223	ENST00000568566	QTRT2	Q9H974	415 aa	Known RBP	12.55	□□□□□ -0.4
TSC2-223	ENST00000568566	ADAMTS2	O95450	1211 aa		12.54	□□□□□ -0.4
TSC2-223	ENST00000568566	RBM6	P78332	1123 aa	Known RBP	12.54	□□□□□ -0.4
TSC2-223	ENST00000568566	HFM1	A2PYH4	1435 aa		12.54	□□□□□ -0.4
TSC2-223	ENST00000568566	NEXMIF	Q5QGS0	1516 aa		12.52	□□□□□ -0.4
TSC2-223	ENST00000568566	CLTCL1	P53675	1640 aa		12.52	□□□□□ -0.4
TSC2-223	ENST00000568566	NGLY1	Q96IV0	654 aa		12.52	□□□□□ -0.41
TSC2-223	ENST00000568566	C1orf167	Q5SNV9	1468 aa		12.52	□□□□□ -0.41
TSC2-223	ENST00000568566	ATAD2	Q6PL18	1390 aa		12.51	□□□□□ -0.41
TSC2-223	ENST00000568566	EP400	Q96L91	3159 aa		12.5	□□□□□ -0.41
TSC2-223	ENST00000568566	TRIM26	Q12899	539 aa	Predicted RBP	12.5	□□□□□ -0.41
TSC2-223	ENST00000568566	FOXD1	Q16676	465 aa		12.5	□□□□□ -0.41
TSC2-223	ENST00000568566	RAB3GAP2	Q9H2M9	1393 aa		12.5	□□□□□ -0.41
TSC2-223	ENST00000568566	LAMC1	P11047	1609 aa		12.5	□□□□□ -0.41
TSC2-223	ENST00000568566	PTCH1	Q13635	1447 aa		12.48	□□□□□ -0.41
TSC2-223	ENST00000568566	USP21	Q9UK80	565 aa		12.48	□□□□□ -0.41
TSC2-223	ENST00000568566	ROBO2	Q9HCK4	1378 aa		12.47	□□□□□ -0.41
TSC2-223	ENST00000568566	ORAI2	Q96SN7	254 aa		12.47	□□□□□ -0.41
TSC2-223	ENST00000568566	KIF1B	O60333	1816 aa		12.46	□□□□□ -0.41
TSC2-223	ENST00000568566	SOS2	Q07890	1332 aa	Predicted RBP	12.46	□□□□□ -0.41
TSC2-223	ENST00000568566	TRPC5	Q9UL62	973 aa	Predicted RBP	12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms