RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 UNC13BO14795 1591 aa14.45□□□□□ -0.1
SF3B3-211ENST00000568291 RPRD2Q5VT52 1461 aaKnown RBP14.44□□□□□ -0.1
SF3B3-211ENST00000568291 NKTRP30414 1462 aaKnown RBP14.43□□□□□ -0.1
SF3B3-211ENST00000568291 ROBO1Q9Y6N7 1651 aa14.42□□□□□ -0.1
SF3B3-211ENST00000568291 IDI1Q13907 227 aa14.42□□□□□ -0.1
SF3B3-211ENST00000568291 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
SF3B3-211ENST00000568291 TMEM94Q12767 1356 aa14.41□□□□□ -0.1
SF3B3-211ENST00000568291 CHD2O14647 1828 aaKnown RBP14.41□□□□□ -0.1
SF3B3-211ENST00000568291 TMEM131LA2VDJ0 1609 aa14.41□□□□□ -0.1
SF3B3-211ENST00000568291 E9PCH4 1651 aa14.4□□□□□ -0.1
SF3B3-211ENST00000568291 ROCK1Q13464 1354 aa14.4□□□□□ -0.1
SF3B3-211ENST00000568291 ZFYVE9O95405 1425 aa14.39□□□□□ -0.11
SF3B3-211ENST00000568291 IQGAP3Q86VI3 1631 aa14.38□□□□□ -0.11
SF3B3-211ENST00000568291 NUP155O75694 1391 aa14.37□□□□□ -0.11
SF3B3-211ENST00000568291 KCNA6P17658 529 aa14.37□□□□□ -0.11
SF3B3-211ENST00000568291 SLC26A8Q96RN1 970 aa14.37□□□□□ -0.11
SF3B3-211ENST00000568291 FAM135BQ49AJ0 1406 aa14.37□□□□□ -0.11
SF3B3-211ENST00000568291 PHLPP1O60346 1717 aa14.36□□□□□ -0.11
SF3B3-211ENST00000568291 RIMS2Q9UQ26 1411 aa14.36□□□□□ -0.11
SF3B3-211ENST00000568291 SLC52A1Q9NWF4 448 aa14.36□□□□□ -0.11
SF3B3-211ENST00000568291 PLEKHG1Q9ULL1 1385 aa14.35□□□□□ -0.11
SF3B3-211ENST00000568291 DIP2AQ14689 1571 aa14.34□□□□□ -0.11
SF3B3-211ENST00000568291 PROSER2Q86WR7 435 aaPredicted RBP14.34□□□□□ -0.11
SF3B3-211ENST00000568291 TRIM52Q96A61 297 aa14.33□□□□□ -0.12
SF3B3-211ENST00000568291 BCANQ96GW7 911 aa14.33□□□□□ -0.12
SF3B3-211ENST00000568291 MSH6P52701 1360 aa14.33□□□□□ -0.12
SF3B3-211ENST00000568291 PPP1R15AO75807 674 aaPredicted RBP14.32□□□□□ -0.12
SF3B3-211ENST00000568291 CHGAP10645 457 aaKnown RBP14.32□□□□□ -0.12
SF3B3-211ENST00000568291 RBM33Q96EV2 1170 aaKnown RBP14.32□□□□□ -0.12
SF3B3-211ENST00000568291 NAIPQ13075 1403 aa14.32□□□□□ -0.12
SF3B3-211ENST00000568291 SPHKAPQ2M3C7 1700 aa14.31□□□□□ -0.12
SF3B3-211ENST00000568291 COL16A1Q07092 1604 aaPredicted RBP14.3□□□□□ -0.12
SF3B3-211ENST00000568291 NUTM2DQ5VT03 806 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-211ENST00000568291 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-211ENST00000568291 TRPM2O94759 1503 aa14.28□□□□□ -0.12
SF3B3-211ENST00000568291 ADAMTS13Q76LX8 1427 aa14.28□□□□□ -0.12
SF3B3-211ENST00000568291 RGS17Q9UGC6 210 aaPredicted RBP14.28□□□□□ -0.12
SF3B3-211ENST00000568291 SETD1AO15047 1707 aaKnown RBP14.27□□□□□ -0.12
SF3B3-211ENST00000568291 NRXN3Q9Y4C0 1643 aa14.26□□□□□ -0.13
SF3B3-211ENST00000568291 XRN1Q8IZH2 1706 aaKnown RBP14.25□□□□□ -0.13
SF3B3-211ENST00000568291 HDGFP51858 240 aaKnown RBP14.25□□□□□ -0.13
SF3B3-211ENST00000568291 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.25□□□□□ -0.13
SF3B3-211ENST00000568291 HFM1A2PYH4 1435 aa14.24□□□□□ -0.13
SF3B3-211ENST00000568291 NCOA3Q9Y6Q9 1424 aa14.24□□□□□ -0.13
SF3B3-211ENST00000568291 SHPRHQ149N8 1683 aa14.24□□□□□ -0.13
SF3B3-211ENST00000568291 AHDC1Q5TGY3 1603 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-211ENST00000568291 PIK3R4Q99570 1358 aa14.23□□□□□ -0.13
SF3B3-211ENST00000568291 JCADQ9P266 1359 aa14.23□□□□□ -0.13
SF3B3-211ENST00000568291 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
SF3B3-211ENST00000568291 SLAIN2Q9P270 581 aa14.23□□□□□ -0.13
SF3B3-211ENST00000568291 TBX22Q9Y458 520 aa14.23□□□□□ -0.13
SF3B3-211ENST00000568291 SETBP1Q9Y6X0 1596 aa14.22□□□□□ -0.13
SF3B3-211ENST00000568291 POTEAQ6S8J7 498 aa14.21□□□□□ -0.13
SF3B3-211ENST00000568291 C14orf37Q86TY3 774 aa14.21□□□□□ -0.13
SF3B3-211ENST00000568291 CLTCL1P53675 1640 aa14.21□□□□□ -0.13
SF3B3-211ENST00000568291 KIF1BO60333 1816 aa14.2□□□□□ -0.14
SF3B3-211ENST00000568291 LRP6O75581 1613 aa14.2□□□□□ -0.14
SF3B3-211ENST00000568291 PTPRUQ92729 1446 aa14.2□□□□□ -0.14
SF3B3-211ENST00000568291 ZNF326Q5BKZ1 582 aaKnown RBP14.18□□□□□ -0.14
SF3B3-211ENST00000568291 NHSL1Q5SYE7 1610 aa14.18□□□□□ -0.14
SF3B3-211ENST00000568291 NALCNQ8IZF0 1738 aa14.18□□□□□ -0.14
SF3B3-211ENST00000568291 DCCP43146 1447 aa14.17□□□□□ -0.14
SF3B3-211ENST00000568291 NEXMIFQ5QGS0 1516 aa14.17□□□□□ -0.14
SF3B3-211ENST00000568291 CADPS2Q86UW7 1296 aa14.17□□□□□ -0.14
SF3B3-211ENST00000568291 MPHOSPH9Q99550 1183 aa14.17□□□□□ -0.14
SF3B3-211ENST00000568291 ASXL1Q8IXJ9 1541 aa14.16□□□□□ -0.14
SF3B3-211ENST00000568291 ATF3P18847 181 aa14.16□□□□□ -0.14
SF3B3-211ENST00000568291 C19orf44Q9H6X5 657 aa14.15□□□□□ -0.14
SF3B3-211ENST00000568291 SETD5Q9C0A6 1442 aa14.15□□□□□ -0.14
SF3B3-211ENST00000568291 AMOTL2Q9Y2J4 779 aa14.14□□□□□ -0.15
SF3B3-211ENST00000568291 SPATA31A6Q5VVP1 1343 aa14.14□□□□□ -0.15
SF3B3-211ENST00000568291 RAB3GAP2Q9H2M9 1393 aa14.12□□□□□ -0.15
SF3B3-211ENST00000568291 MEX3CQ5U5Q3 659 aaKnown RBP14.12□□□□□ -0.15
SF3B3-211ENST00000568291 MST1RQ04912 1400 aa14.12□□□□□ -0.15
SF3B3-211ENST00000568291 ADGRL3Q9HAR2 1447 aa14.12□□□□□ -0.15
SF3B3-211ENST00000568291 RGL3Q3MIN7 710 aa14.11□□□□□ -0.15
SF3B3-211ENST00000568291 BRINP3Q76B58 766 aa14.11□□□□□ -0.15
SF3B3-211ENST00000568291 METP08581 1390 aa14.1□□□□□ -0.15
SF3B3-211ENST00000568291 PPLO60437 1756 aa14.1□□□□□ -0.15
SF3B3-211ENST00000568291 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
SF3B3-211ENST00000568291 LAMC1P11047 1609 aa14.06□□□□□ -0.16
SF3B3-211ENST00000568291 ZNF772Q68DY9 489 aaPredicted RBP14.06□□□□□ -0.16
SF3B3-211ENST00000568291 NUTM2BA6NNL0 878 aaPredicted RBP14.04□□□□□ -0.16
SF3B3-211ENST00000568291 NUTM2EB1AL46 878 aaPredicted RBP14.04□□□□□ -0.16
SF3B3-211ENST00000568291 NUTM2AQ8IVF1 878 aaPredicted RBP14.04□□□□□ -0.16
SF3B3-211ENST00000568291 PRAG1Q86YV5 1406 aa14.03□□□□□ -0.16
SF3B3-211ENST00000568291 CDK12Q9NYV4 1490 aaPredicted RBP14.03□□□□□ -0.16
SF3B3-211ENST00000568291 C1orf167Q5SNV9 1468 aa14.02□□□□□ -0.16
SF3B3-211ENST00000568291 PNPLA6Q8IY17 1366 aa14.02□□□□□ -0.17
SF3B3-211ENST00000568291 IFT172Q9UG01 1749 aa14.01□□□□□ -0.17
SF3B3-211ENST00000568291 AFF2P51816 1311 aa14.01□□□□□ -0.17
SF3B3-211ENST00000568291 CDC42BPGQ6DT37 1551 aa14□□□□□ -0.17
SF3B3-211ENST00000568291 CCDC144AA2RUR9 1427 aa14□□□□□ -0.17
SF3B3-211ENST00000568291 ROBO2Q9HCK4 1378 aa14□□□□□ -0.17
SF3B3-211ENST00000568291 ADGRF5Q8IZF2 1346 aa14□□□□□ -0.17
SF3B3-211ENST00000568291 VGFO15240 615 aaPredicted RBP14□□□□□ -0.17
SF3B3-211ENST00000568291 DDX17Q92841 729 aaKnown RBP14□□□□□ -0.17
SF3B3-211ENST00000568291 KNDC1Q76NI1 1749 aa13.98□□□□□ -0.17
SF3B3-211ENST00000568291 COL22A1Q8NFW1 1626 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-211ENST00000568291 RXRBP28702 533 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms