RNA–Protein interactions for RNA: ENST00000568038.1

SMG1-214, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 1,210 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-214ENST00000568038 ARHGEF11O15085 1522 aa12.29□□□□□ -0.44
SMG1-214ENST00000568038 E2F4Q16254 413 aa12.29□□□□□ -0.44
SMG1-214ENST00000568038 TSHZ2Q9NRE2 1034 aa12.29□□□□□ -0.44
SMG1-214ENST00000568038 VPS9D1Q9Y2B5 631 aa12.29□□□□□ -0.44
SMG1-214ENST00000568038 SAMD9Q5K651 1589 aa12.29□□□□□ -0.44
SMG1-214ENST00000568038 DDX12PQ92771 950 aa12.28□□□□□ -0.44
SMG1-214ENST00000568038 HRO43593 1189 aa12.27□□□□□ -0.45
SMG1-214ENST00000568038 TYW1BQ6NUM6 668 aa12.27□□□□□ -0.45
SMG1-214ENST00000568038 PHF14O94880 888 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 PTPRGP23470 1445 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 ARAP1Q96P48 1450 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 RIMBP3CA6NJZ7 1639 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 RIMBP3BA6NNM3 1639 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 RIMBP3Q9UFD9 1639 aa12.26□□□□□ -0.45
SMG1-214ENST00000568038 RBM33Q96EV2 1170 aaKnown RBP12.25□□□□□ -0.45
SMG1-214ENST00000568038 CYB5RLQ6IPT4 315 aa12.23□□□□□ -0.45
SMG1-214ENST00000568038 FBXW7Q969H0 707 aa12.23□□□□□ -0.45
SMG1-214ENST00000568038 ZBED2Q9BTP6 218 aa12.23□□□□□ -0.45
SMG1-214ENST00000568038 KCTD12Q96CX2 325 aaKnown RBP12.22□□□□□ -0.45
SMG1-214ENST00000568038 EPAS1Q99814 870 aa12.22□□□□□ -0.45
SMG1-214ENST00000568038 ATP1B4Q9UN42 357 aaPredicted RBP12.22□□□□□ -0.45
SMG1-214ENST00000568038 FMN1Q68DA7 1419 aa12.2□□□□□ -0.46
SMG1-214ENST00000568038 COL9A1P20849 921 aa12.2□□□□□ -0.46
SMG1-214ENST00000568038 SLC4A5Q9BY07 1137 aa12.2□□□□□ -0.46
SMG1-214ENST00000568038 SPDYE16A6NNV3 312 aaPredicted RBP12.19□□□□□ -0.46
SMG1-214ENST00000568038 PDIA6Q15084 440 aa12.19□□□□□ -0.46
SMG1-214ENST00000568038 PLB1Q6P1J6 1458 aa12.19□□□□□ -0.46
SMG1-214ENST00000568038 ARID3CA6NKF2 412 aa12.18□□□□□ -0.46
SMG1-214ENST00000568038 PPP1R3GB7ZBB8 358 aa12.18□□□□□ -0.46
SMG1-214ENST00000568038 NBR1Q14596 966 aa12.18□□□□□ -0.46
SMG1-214ENST00000568038 PROX2Q3B8N5 592 aa12.18□□□□□ -0.46
SMG1-214ENST00000568038 GRXCR2A6NFK2 248 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 GOLGA8CPA6NN73 597 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 C6orf132Q5T0Z8 1188 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 HCSTQ9UBK5 93 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 VPS8Q8N3P4 1428 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 UACAQ9BZF9 1416 aa12.17□□□□□ -0.46
SMG1-214ENST00000568038 ABCA8O94911 1581 aa12.15□□□□□ -0.46
SMG1-214ENST00000568038 MRPL50Q8N5N7 158 aaKnown RBP12.15□□□□□ -0.46
SMG1-214ENST00000568038 RAPGEF6Q8TEU7 1601 aa12.15□□□□□ -0.47
SMG1-214ENST00000568038 BHMG1C9JSJ3 638 aaPredicted RBP12.14□□□□□ -0.47
SMG1-214ENST00000568038 PCF11O94913 1555 aaKnown RBP12.13□□□□□ -0.47
SMG1-214ENST00000568038 CASKIN1Q8WXD9 1431 aa12.13□□□□□ -0.47
SMG1-214ENST00000568038 MAP3K7O43318 606 aa12.13□□□□□ -0.47
SMG1-214ENST00000568038 PTPN5P54829 565 aa12.13□□□□□ -0.47
SMG1-214ENST00000568038 NBPF3Q9H094 633 aa12.12□□□□□ -0.47
SMG1-214ENST00000568038 ABCC2Q92887 1545 aa12.11□□□□□ -0.47
SMG1-214ENST00000568038 ADCY10Q96PN6 1610 aa12.11□□□□□ -0.47
SMG1-214ENST00000568038 UHRF1BP1LA0JNW5 1464 aa12.11□□□□□ -0.47
SMG1-214ENST00000568038 NUP153P49790 1475 aaKnown RBP12.11□□□□□ -0.47
SMG1-214ENST00000568038 FYCO1Q9BQS8 1478 aa12.11□□□□□ -0.47
SMG1-214ENST00000568038 EN1Q05925 392 aaPredicted RBP12.1□□□□□ -0.47
SMG1-214ENST00000568038 TSR1Q2NL82 804 aaKnown RBP12.1□□□□□ -0.47
SMG1-214ENST00000568038 WNT2BQ93097 391 aa12.1□□□□□ -0.47
SMG1-214ENST00000568038 ARIH1Q9Y4X5 557 aaPredicted RBP12.1□□□□□ -0.47
SMG1-214ENST00000568038 HECW1Q76N89 1606 aa12.1□□□□□ -0.47
SMG1-214ENST00000568038 KIAA1468Q9P260 1216 aa12.09□□□□□ -0.47
SMG1-214ENST00000568038 RABGEF1Q9UJ41 708 aa12.09□□□□□ -0.47
SMG1-214ENST00000568038 ATP10BO94823 1461 aa12.08□□□□□ -0.48
SMG1-214ENST00000568038 EPRSP07814 1512 aaKnown RBP12.07□□□□□ -0.48
SMG1-214ENST00000568038 CDK13Q14004 1512 aaKnown RBP12.07□□□□□ -0.48
SMG1-214ENST00000568038 KDM5BQ9UGL1 1544 aa12.06□□□□□ -0.48
SMG1-214ENST00000568038 PRIM1P49642 420 aaKnown RBP12.05□□□□□ -0.48
SMG1-214ENST00000568038 PLCB2Q00722 1185 aa12.05□□□□□ -0.48
SMG1-214ENST00000568038 LRRIQ1Q96JM4 1722 aa12.05□□□□□ -0.48
SMG1-214ENST00000568038 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
SMG1-214ENST00000568038 CCDC18Q5T9S5 1454 aa12.04□□□□□ -0.48
SMG1-214ENST00000568038 PLEKHD1A6NEE1 506 aa12.04□□□□□ -0.48
SMG1-214ENST00000568038 PPARGC1BQ86YN6 1023 aaKnown RBP12.04□□□□□ -0.48
SMG1-214ENST00000568038 KCNV2Q8TDN2 545 aa12.04□□□□□ -0.48
SMG1-214ENST00000568038 TRIM6-TRIM34B2RNG4 842 aa12.03□□□□□ -0.48
SMG1-214ENST00000568038 THSD4Q6ZMP0 1018 aa12.03□□□□□ -0.48
SMG1-214ENST00000568038 PLA2G2EQ9NZK7 142 aa12.03□□□□□ -0.48
SMG1-214ENST00000568038 SEPT9Q9UHD8 586 aaPredicted RBP12.03□□□□□ -0.48
SMG1-214ENST00000568038 CDK11AQ9UQ88 783 aaPredicted RBP12.03□□□□□ -0.48
SMG1-214ENST00000568038 KANK4Q5T7N3 995 aaPredicted RBP12.02□□□□□ -0.49
SMG1-214ENST00000568038 OSBPP22059 807 aa12.01□□□□□ -0.49
SMG1-214ENST00000568038 ARHGEF1Q92888 912 aaKnown RBP12.01□□□□□ -0.49
SMG1-214ENST00000568038 MTUS2Q5JR59 1369 aa12.01□□□□□ -0.49
SMG1-214ENST00000568038 TIAM1Q13009 1591 aa12.01□□□□□ -0.49
SMG1-214ENST00000568038 ASXL2Q76L83 1435 aa12□□□□□ -0.49
SMG1-214ENST00000568038 ONECUT3O60422 494 aaPredicted RBP11.99□□□□□ -0.49
SMG1-214ENST00000568038 ANKK1Q8NFD2 765 aa11.99□□□□□ -0.49
SMG1-214ENST00000568038 TSKSQ9UJT2 592 aa11.99□□□□□ -0.49
SMG1-214ENST00000568038 MAP3K1Q13233 1512 aa11.99□□□□□ -0.49
SMG1-214ENST00000568038 CFAP43Q8NDM7 1665 aa11.99□□□□□ -0.49
SMG1-214ENST00000568038 MAGI3Q5TCQ9 1506 aa11.98□□□□□ -0.49
SMG1-214ENST00000568038 HAP1P54257 671 aaPredicted RBP11.98□□□□□ -0.49
SMG1-214ENST00000568038 PACS2Q86VP3 889 aa11.98□□□□□ -0.49
SMG1-214ENST00000568038 CDHR5Q9HBB8 845 aa11.98□□□□□ -0.49
SMG1-214ENST00000568038 LRRC9Q6ZRR7 1453 aa11.97□□□□□ -0.49
SMG1-214ENST00000568038 TROQ12816 1431 aaPredicted RBP11.97□□□□□ -0.49
SMG1-214ENST00000568038 BCAMP50895 628 aa11.97□□□□□ -0.49
SMG1-214ENST00000568038 LAPTM4BQ86VI4 370 aa11.97□□□□□ -0.49
SMG1-214ENST00000568038 CDCA7LQ96GN5 454 aa11.97□□□□□ -0.49
SMG1-214ENST00000568038 ZFRQ96KR1 1074 aaKnown RBP11.97□□□□□ -0.49
SMG1-214ENST00000568038 WDR7Q9Y4E6 1490 aa11.96□□□□□ -0.49
SMG1-214ENST00000568038 MLLT3P42568 568 aaPredicted RBP11.96□□□□□ -0.49
SMG1-214ENST00000568038 MAPKBP1O60336 1514 aa11.96□□□□□ -0.5
SMG1-214ENST00000568038 PRSS12P56730 875 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms