RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 MED14O60244 1454 aa15.33■□□□□ 0.04
GTF3C1-206ENST00000566779 IQSEC2Q5JU85 1478 aa15.33■□□□□ 0.04
GTF3C1-206ENST00000566779 RPRD2Q5VT52 1461 aaKnown RBP15.33■□□□□ 0.04
GTF3C1-206ENST00000566779 CHGAP10645 457 aaKnown RBP15.32■□□□□ 0.04
GTF3C1-206ENST00000566779 TXNDC2Q86VQ3 553 aa15.32■□□□□ 0.04
GTF3C1-206ENST00000566779 NOS1P29475 1434 aa15.32■□□□□ 0.04
GTF3C1-206ENST00000566779 CPS1P31327 1500 aa15.32■□□□□ 0.04
GTF3C1-206ENST00000566779 UBAP1LF5GYI3 381 aa15.31■□□□□ 0.04
GTF3C1-206ENST00000566779 IDI1Q13907 227 aa15.31■□□□□ 0.04
GTF3C1-206ENST00000566779 EID1Q9Y6B2 187 aa15.31■□□□□ 0.04
GTF3C1-206ENST00000566779 ARHGAP23Q9P227 1491 aa15.31■□□□□ 0.04
GTF3C1-206ENST00000566779 BCANQ96GW7 911 aa15.3■□□□□ 0.04
GTF3C1-206ENST00000566779 TMEM2Q9UHN6 1383 aa15.3■□□□□ 0.04
GTF3C1-206ENST00000566779 TMEM131LA2VDJ0 1609 aa15.29■□□□□ 0.04
GTF3C1-206ENST00000566779 LTKP29376 864 aa15.29■□□□□ 0.04
GTF3C1-206ENST00000566779 PPP1R15AO75807 674 aaPredicted RBP15.27■□□□□ 0.04
GTF3C1-206ENST00000566779 XIRP1Q702N8 1843 aaKnown RBP15.26■□□□□ 0.03
GTF3C1-206ENST00000566779 NAIPQ13075 1403 aa15.26■□□□□ 0.03
GTF3C1-206ENST00000566779 PIP4K2BP78356 416 aa15.25■□□□□ 0.03
GTF3C1-206ENST00000566779 TRIM52Q96A61 297 aa15.25■□□□□ 0.03
GTF3C1-206ENST00000566779 SLC52A1Q9NWF4 448 aa15.25■□□□□ 0.03
GTF3C1-206ENST00000566779 KIF1BO60333 1816 aa15.24■□□□□ 0.03
GTF3C1-206ENST00000566779 NUTM2DQ5VT03 806 aaPredicted RBP15.24■□□□□ 0.03
GTF3C1-206ENST00000566779 SLC26A8Q96RN1 970 aa15.23■□□□□ 0.03
GTF3C1-206ENST00000566779 RIMS2Q9UQ26 1411 aa15.23■□□□□ 0.03
GTF3C1-206ENST00000566779 CLTCL1P53675 1640 aa15.22■□□□□ 0.03
GTF3C1-206ENST00000566779 FKBP8Q14318 412 aa15.22■□□□□ 0.03
GTF3C1-206ENST00000566779 LRRC7Q96NW7 1537 aa15.22■□□□□ 0.03
GTF3C1-206ENST00000566779 HFM1A2PYH4 1435 aa15.21■□□□□ 0.03
GTF3C1-206ENST00000566779 ATF5Q9Y2D1 282 aaPredicted RBP15.2■□□□□ 0.02
GTF3C1-206ENST00000566779 ZFYVE9O95405 1425 aa15.18■□□□□ 0.02
GTF3C1-206ENST00000566779 ZNF326Q5BKZ1 582 aaKnown RBP15.18■□□□□ 0.02
GTF3C1-206ENST00000566779 TRPM2O94759 1503 aa15.17■□□□□ 0.02
GTF3C1-206ENST00000566779 CHD2O14647 1828 aaKnown RBP15.17■□□□□ 0.02
GTF3C1-206ENST00000566779 TOM1O60784 492 aa15.17■□□□□ 0.02
GTF3C1-206ENST00000566779 U3KPZ7 1027 aaPredicted RBP15.17■□□□□ 0.02
GTF3C1-206ENST00000566779 SAMD1Q6SPF0 538 aaPredicted RBP15.16■□□□□ 0.02
GTF3C1-206ENST00000566779 RBM33Q96EV2 1170 aaKnown RBP15.16■□□□□ 0.02
GTF3C1-206ENST00000566779 NWD1Q149M9 1564 aa15.15■□□□□ 0.02
GTF3C1-206ENST00000566779 PLEKHG1Q9ULL1 1385 aa15.15■□□□□ 0.02
GTF3C1-206ENST00000566779 ALKQ9UM73 1620 aa15.15■□□□□ 0.02
GTF3C1-206ENST00000566779 HDGFP51858 240 aaKnown RBP15.14■□□□□ 0.01
GTF3C1-206ENST00000566779 DISP3Q9P2K9 1392 aa15.13■□□□□ 0.01
GTF3C1-206ENST00000566779 DIP2AQ14689 1571 aa15.12■□□□□ 0.01
GTF3C1-206ENST00000566779 PROSER2Q86WR7 435 aaPredicted RBP15.12■□□□□ 0.01
GTF3C1-206ENST00000566779 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.12■□□□□ 0.01
GTF3C1-206ENST00000566779 NKTRP30414 1462 aaKnown RBP15.12■□□□□ 0.01
GTF3C1-206ENST00000566779 TMEM94Q12767 1356 aa15.11■□□□□ 0.01
GTF3C1-206ENST00000566779 KCNA6P17658 529 aa15.11■□□□□ 0.01
GTF3C1-206ENST00000566779 NRXN3Q9Y4C0 1643 aa15.1■□□□□ 0.01
GTF3C1-206ENST00000566779 HSPA1LP34931 641 aa15.1■□□□□ 0.01
GTF3C1-206ENST00000566779 NEXMIFQ5QGS0 1516 aa15.1■□□□□ 0.01
GTF3C1-206ENST00000566779 PPLO60437 1756 aa15.09■□□□□ 0.01
GTF3C1-206ENST00000566779 C14orf37Q86TY3 774 aa15.09■□□□□ 0.01
GTF3C1-206ENST00000566779 ROBO1Q9Y6N7 1651 aa15.08■□□□□ 0
GTF3C1-206ENST00000566779 ADAMTS13Q76LX8 1427 aa15.08■□□□□ 0
GTF3C1-206ENST00000566779 RTN4Q9NQC3 1192 aaKnown RBP15.07■□□□□ 0
GTF3C1-206ENST00000566779 AMER1Q5JTC6 1135 aaPredicted RBP15.06■□□□□ 0
GTF3C1-206ENST00000566779 MSH6P52701 1360 aa15.06■□□□□ 0
GTF3C1-206ENST00000566779 SETBP1Q9Y6X0 1596 aa15.06■□□□□ 0
GTF3C1-206ENST00000566779 XRN1Q8IZH2 1706 aaKnown RBP15.04■□□□□ -0
GTF3C1-206ENST00000566779 MED1Q15648 1581 aaPredicted RBP15.04■□□□□ -0
GTF3C1-206ENST00000566779 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.03■□□□□ -0
GTF3C1-206ENST00000566779 CCDC144AA2RUR9 1427 aa15.03■□□□□ -0
GTF3C1-206ENST00000566779 SETD5Q9C0A6 1442 aa15.03■□□□□ -0
GTF3C1-206ENST00000566779 TBX22Q9Y458 520 aa15.03■□□□□ -0
GTF3C1-206ENST00000566779 PHLPP1O60346 1717 aa15.02□□□□□ -0.01
GTF3C1-206ENST00000566779 IFT172Q9UG01 1749 aa15.02□□□□□ -0.01
GTF3C1-206ENST00000566779 SETD1AO15047 1707 aaKnown RBP15.01□□□□□ -0.01
GTF3C1-206ENST00000566779 MPHOSPH9Q99550 1183 aa15.01□□□□□ -0.01
GTF3C1-206ENST00000566779 PTPRUQ92729 1446 aa15□□□□□ -0.01
GTF3C1-206ENST00000566779 RAB3GAP2Q9H2M9 1393 aa15□□□□□ -0.01
GTF3C1-206ENST00000566779 AMOTL2Q9Y2J4 779 aa14.99□□□□□ -0.01
GTF3C1-206ENST00000566779 NALCNQ8IZF0 1738 aa14.99□□□□□ -0.01
GTF3C1-206ENST00000566779 METP08581 1390 aa14.98□□□□□ -0.01
GTF3C1-206ENST00000566779 PIK3R4Q99570 1358 aa14.98□□□□□ -0.01
GTF3C1-206ENST00000566779 RGL3Q3MIN7 710 aa14.98□□□□□ -0.01
GTF3C1-206ENST00000566779 VGFO15240 615 aaPredicted RBP14.94□□□□□ -0.02
GTF3C1-206ENST00000566779 ATF3P18847 181 aa14.94□□□□□ -0.02
GTF3C1-206ENST00000566779 FAM135BQ49AJ0 1406 aa14.93□□□□□ -0.02
GTF3C1-206ENST00000566779 ILDR2Q71H61 639 aa14.93□□□□□ -0.02
GTF3C1-206ENST00000566779 SLAIN2Q9P270 581 aa14.93□□□□□ -0.02
GTF3C1-206ENST00000566779 RPGRIP1LQ68CZ1 1315 aa14.92□□□□□ -0.02
GTF3C1-206ENST00000566779 SPATA31E1Q6ZUB1 1445 aa14.91□□□□□ -0.02
GTF3C1-206ENST00000566779 CADPS2Q86UW7 1296 aa14.9□□□□□ -0.02
GTF3C1-206ENST00000566779 COL16A1Q07092 1604 aaPredicted RBP14.9□□□□□ -0.02
GTF3C1-206ENST00000566779 NCOA3Q9Y6Q9 1424 aa14.9□□□□□ -0.02
GTF3C1-206ENST00000566779 ADGRF5Q8IZF2 1346 aa14.9□□□□□ -0.02
GTF3C1-206ENST00000566779 C19orf44Q9H6X5 657 aa14.89□□□□□ -0.03
GTF3C1-206ENST00000566779 ADGRL3Q9HAR2 1447 aa14.89□□□□□ -0.03
GTF3C1-206ENST00000566779 ACIN1Q9UKV3 1341 aaKnown RBP14.88□□□□□ -0.03
GTF3C1-206ENST00000566779 KNDC1Q76NI1 1749 aa14.87□□□□□ -0.03
GTF3C1-206ENST00000566779 STK26Q9P289 416 aa14.87□□□□□ -0.03
GTF3C1-206ENST00000566779 LAMC1P11047 1609 aa14.87□□□□□ -0.03
GTF3C1-206ENST00000566779 ASXL1Q8IXJ9 1541 aa14.87□□□□□ -0.03
GTF3C1-206ENST00000566779 ANKRD30BQ9BXX2 1392 aa14.86□□□□□ -0.03
GTF3C1-206ENST00000566779 ROBO2Q9HCK4 1378 aa14.86□□□□□ -0.03
GTF3C1-206ENST00000566779 PTCH1Q13635 1447 aa14.86□□□□□ -0.03
GTF3C1-206ENST00000566779 ZNF219Q9P2Y4 722 aaPredicted RBP14.86□□□□□ -0.03
GTF3C1-206ENST00000566779 AHDC1Q5TGY3 1603 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms