RNA–Protein interactions for RNA: ENST00000566493.1

UBR1-206, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-206ENST00000566493 ROCK1Q13464 1354 aa18.29■□□□□ 0.52
UBR1-206ENST00000566493 ITGAEP38570 1179 aa18.28■□□□□ 0.52
UBR1-206ENST00000566493 GCC2Q8IWJ2 1684 aa18.28■□□□□ 0.52
UBR1-206ENST00000566493 UNC13BO14795 1591 aa18.27■□□□□ 0.52
UBR1-206ENST00000566493 HDGFP51858 240 aaKnown RBP18.27■□□□□ 0.52
UBR1-206ENST00000566493 SLC26A8Q96RN1 970 aa18.27■□□□□ 0.52
UBR1-206ENST00000566493 PPARGC1BQ86YN6 1023 aaKnown RBP18.26■□□□□ 0.51
UBR1-206ENST00000566493 KCNA6P17658 529 aa18.25■□□□□ 0.51
UBR1-206ENST00000566493 XIRP1Q702N8 1843 aaKnown RBP18.24■□□□□ 0.51
UBR1-206ENST00000566493 PPP1R15AO75807 674 aaPredicted RBP18.24■□□□□ 0.51
UBR1-206ENST00000566493 MED1Q15648 1581 aaPredicted RBP18.24■□□□□ 0.51
UBR1-206ENST00000566493 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
UBR1-206ENST00000566493 PROSER2Q86WR7 435 aaPredicted RBP18.23■□□□□ 0.51
UBR1-206ENST00000566493 MYO5BQ9ULV0 1848 aa18.23■□□□□ 0.51
UBR1-206ENST00000566493 NUP155O75694 1391 aa18.21■□□□□ 0.51
UBR1-206ENST00000566493 TMEM94Q12767 1356 aa18.21■□□□□ 0.51
UBR1-206ENST00000566493 RIMS2Q9UQ26 1411 aa18.21■□□□□ 0.51
UBR1-206ENST00000566493 E9PCH4 1651 aa18.21■□□□□ 0.51
UBR1-206ENST00000566493 TMEM131LA2VDJ0 1609 aa18.2■□□□□ 0.5
UBR1-206ENST00000566493 IQGAP3Q86VI3 1631 aa18.2■□□□□ 0.5
UBR1-206ENST00000566493 ZFYVE9O95405 1425 aa18.19■□□□□ 0.5
UBR1-206ENST00000566493 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.19■□□□□ 0.5
UBR1-206ENST00000566493 PLEKHG1Q9ULL1 1385 aa18.18■□□□□ 0.5
UBR1-206ENST00000566493 NKTRP30414 1462 aaKnown RBP18.17■□□□□ 0.5
UBR1-206ENST00000566493 RBM33Q96EV2 1170 aaKnown RBP18.16■□□□□ 0.5
UBR1-206ENST00000566493 NWD1Q149M9 1564 aa18.16■□□□□ 0.5
UBR1-206ENST00000566493 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
UBR1-206ENST00000566493 TBX22Q9Y458 520 aa18.14■□□□□ 0.49
UBR1-206ENST00000566493 MSH6P52701 1360 aa18.14■□□□□ 0.49
UBR1-206ENST00000566493 CHD2O14647 1828 aaKnown RBP18.14■□□□□ 0.49
UBR1-206ENST00000566493 NUTM2DQ5VT03 806 aaPredicted RBP18.13■□□□□ 0.49
UBR1-206ENST00000566493 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
UBR1-206ENST00000566493 ROBO1Q9Y6N7 1651 aa18.09■□□□□ 0.49
UBR1-206ENST00000566493 HOXD11P31277 338 aaPredicted RBP18.09■□□□□ 0.49
UBR1-206ENST00000566493 C14orf37Q86TY3 774 aa18.09■□□□□ 0.49
UBR1-206ENST00000566493 DIP2AQ14689 1571 aa18.08■□□□□ 0.49
UBR1-206ENST00000566493 SLAIN2Q9P270 581 aa18.08■□□□□ 0.48
UBR1-206ENST00000566493 SPHKAPQ2M3C7 1700 aa18.08■□□□□ 0.48
UBR1-206ENST00000566493 RRBP1Q9P2E9 1410 aaKnown RBP18.07■□□□□ 0.48
UBR1-206ENST00000566493 PIK3R4Q99570 1358 aa18.06■□□□□ 0.48
UBR1-206ENST00000566493 ZNF326Q5BKZ1 582 aaKnown RBP18.06■□□□□ 0.48
UBR1-206ENST00000566493 ADAMTS13Q76LX8 1427 aa18.06■□□□□ 0.48
UBR1-206ENST00000566493 RNF216Q9NWF9 866 aaPredicted RBP18.05■□□□□ 0.48
UBR1-206ENST00000566493 NCOA3Q9Y6Q9 1424 aa18.05■□□□□ 0.48
UBR1-206ENST00000566493 TRPM2O94759 1503 aa18.04■□□□□ 0.48
UBR1-206ENST00000566493 ATF3P18847 181 aa18.02■□□□□ 0.48
UBR1-206ENST00000566493 AMOTL2Q9Y2J4 779 aa18.02■□□□□ 0.48
UBR1-206ENST00000566493 NAIPQ13075 1403 aa18.01■□□□□ 0.47
UBR1-206ENST00000566493 CADPS2Q86UW7 1296 aa18.01■□□□□ 0.47
UBR1-206ENST00000566493 TRIM52Q96A61 297 aa18.01■□□□□ 0.47
UBR1-206ENST00000566493 C19orf44Q9H6X5 657 aa18.01■□□□□ 0.47
UBR1-206ENST00000566493 PHLPP1O60346 1717 aa18.01■□□□□ 0.47
UBR1-206ENST00000566493 DCAF8L1A6NGE4 600 aa18■□□□□ 0.47
UBR1-206ENST00000566493 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.98■□□□□ 0.47
UBR1-206ENST00000566493 KIF1BO60333 1816 aa17.98■□□□□ 0.47
UBR1-206ENST00000566493 SETBP1Q9Y6X0 1596 aa17.97■□□□□ 0.47
UBR1-206ENST00000566493 CLTCL1P53675 1640 aa17.97■□□□□ 0.47
UBR1-206ENST00000566493 RGS17Q9UGC6 210 aaPredicted RBP17.96■□□□□ 0.47
UBR1-206ENST00000566493 PTPRUQ92729 1446 aa17.96■□□□□ 0.47
UBR1-206ENST00000566493 JCADQ9P266 1359 aa17.95■□□□□ 0.46
UBR1-206ENST00000566493 NRXN3Q9Y4C0 1643 aa17.95■□□□□ 0.46
UBR1-206ENST00000566493 HFM1A2PYH4 1435 aa17.95■□□□□ 0.46
UBR1-206ENST00000566493 SLC4A1APQ9BWU0 796 aaKnown RBP17.94■□□□□ 0.46
UBR1-206ENST00000566493 NEXMIFQ5QGS0 1516 aa17.93■□□□□ 0.46
UBR1-206ENST00000566493 XRN1Q8IZH2 1706 aaKnown RBP17.92■□□□□ 0.46
UBR1-206ENST00000566493 METP08581 1390 aa17.91■□□□□ 0.46
UBR1-206ENST00000566493 COL16A1Q07092 1604 aaPredicted RBP17.9■□□□□ 0.46
UBR1-206ENST00000566493 VGFO15240 615 aaPredicted RBP17.9■□□□□ 0.46
UBR1-206ENST00000566493 NPM3O75607 178 aaKnown RBP17.9■□□□□ 0.46
UBR1-206ENST00000566493 DCCP43146 1447 aa17.89■□□□□ 0.46
UBR1-206ENST00000566493 AHDC1Q5TGY3 1603 aaPredicted RBP17.88■□□□□ 0.45
UBR1-206ENST00000566493 POTEAQ6S8J7 498 aa17.88■□□□□ 0.45
UBR1-206ENST00000566493 RPGRIP1LQ68CZ1 1315 aa17.88■□□□□ 0.45
UBR1-206ENST00000566493 KCNA4P22459 653 aa17.87■□□□□ 0.45
UBR1-206ENST00000566493 MEX3CQ5U5Q3 659 aaKnown RBP17.87■□□□□ 0.45
UBR1-206ENST00000566493 BRINP3Q76B58 766 aa17.87■□□□□ 0.45
UBR1-206ENST00000566493 SPATA31A6Q5VVP1 1343 aa17.87■□□□□ 0.45
UBR1-206ENST00000566493 SHPRHQ149N8 1683 aa17.83■□□□□ 0.45
UBR1-206ENST00000566493 MST1RQ04912 1400 aa17.83■□□□□ 0.45
UBR1-206ENST00000566493 ADGRL3Q9HAR2 1447 aa17.83■□□□□ 0.45
UBR1-206ENST00000566493 ASXL1Q8IXJ9 1541 aa17.82■□□□□ 0.44
UBR1-206ENST00000566493 PPLO60437 1756 aa17.81■□□□□ 0.44
UBR1-206ENST00000566493 NALCNQ8IZF0 1738 aa17.81■□□□□ 0.44
UBR1-206ENST00000566493 CCDC144AA2RUR9 1427 aa17.8■□□□□ 0.44
UBR1-206ENST00000566493 LRP6O75581 1613 aa17.8■□□□□ 0.44
UBR1-206ENST00000566493 NUTM2BA6NNL0 878 aaPredicted RBP17.79■□□□□ 0.44
UBR1-206ENST00000566493 NUTM2EB1AL46 878 aaPredicted RBP17.79■□□□□ 0.44
UBR1-206ENST00000566493 ZNF772Q68DY9 489 aaPredicted RBP17.79■□□□□ 0.44
UBR1-206ENST00000566493 NUTM2AQ8IVF1 878 aaPredicted RBP17.79■□□□□ 0.44
UBR1-206ENST00000566493 LRRC59Q96AG4 307 aaKnown RBP17.79■□□□□ 0.44
UBR1-206ENST00000566493 MPHOSPH9Q99550 1183 aa17.79■□□□□ 0.44
UBR1-206ENST00000566493 PTCH1Q13635 1447 aa17.79■□□□□ 0.44
UBR1-206ENST00000566493 SETD1AO15047 1707 aaKnown RBP17.78■□□□□ 0.44
UBR1-206ENST00000566493 NHSL1Q5SYE7 1610 aa17.78■□□□□ 0.44
UBR1-206ENST00000566493 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.44
UBR1-206ENST00000566493 SETD5Q9C0A6 1442 aa17.77■□□□□ 0.44
UBR1-206ENST00000566493 ROBO2Q9HCK4 1378 aa17.77■□□□□ 0.43
UBR1-206ENST00000566493 RGL3Q3MIN7 710 aa17.76■□□□□ 0.43
UBR1-206ENST00000566493 C1orf167Q5SNV9 1468 aa17.75■□□□□ 0.43
UBR1-206ENST00000566493 DDX17Q92841 729 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms