RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PPRC1Q5VV67 1664 aaKnown RBP8.44□□□□□ -1.06
CLN3-223ENST00000566472 KIF3BO15066 747 aa8.44□□□□□ -1.06
CLN3-223ENST00000566472 NPC1L1Q9UHC9 1359 aa8.44□□□□□ -1.06
CLN3-223ENST00000566472 FRMPD1Q5SYB0 1578 aa8.44□□□□□ -1.06
CLN3-223ENST00000566472 SBNO2Q9Y2G9 1366 aa8.43□□□□□ -1.06
CLN3-223ENST00000566472 BLMP54132 1417 aaPredicted RBP8.43□□□□□ -1.06
CLN3-223ENST00000566472 SETBP1Q9Y6X0 1596 aa8.43□□□□□ -1.06
CLN3-223ENST00000566472 IFT172Q9UG01 1749 aa8.43□□□□□ -1.06
CLN3-223ENST00000566472 PDE3BQ13370 1112 aa8.42□□□□□ -1.06
CLN3-223ENST00000566472 ABCA6Q8N139 1617 aa8.42□□□□□ -1.06
CLN3-223ENST00000566472 MYO3AQ8NEV4 1616 aa8.42□□□□□ -1.06
CLN3-223ENST00000566472 KIF1BO60333 1816 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 GLI2P10070 1586 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 ABCC3O15438 1527 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 RPGRIP1LQ68CZ1 1315 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 PANK3Q9H999 370 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 MYT1LQ9UL68 1186 aa8.4□□□□□ -1.06
CLN3-223ENST00000566472 ZC3H13Q5T200 1668 aaKnown RBP8.4□□□□□ -1.07
CLN3-223ENST00000566472 ASXL1Q8IXJ9 1541 aa8.39□□□□□ -1.07
CLN3-223ENST00000566472 PIK3C2GO75747 1445 aa8.39□□□□□ -1.07
CLN3-223ENST00000566472 NPATQ14207 1427 aa8.39□□□□□ -1.07
CLN3-223ENST00000566472 ARHGAP31Q2M1Z3 1444 aa8.39□□□□□ -1.07
CLN3-223ENST00000566472 KDM5AP29375 1690 aaKnown RBP8.39□□□□□ -1.07
CLN3-223ENST00000566472 NOS1P29475 1434 aa8.38□□□□□ -1.07
CLN3-223ENST00000566472 MROH2AA6NES4 1674 aa8.38□□□□□ -1.07
CLN3-223ENST00000566472 UGGT1Q9NYU2 1555 aa8.38□□□□□ -1.07
CLN3-223ENST00000566472 DIP2CQ9Y2E4 1556 aa8.38□□□□□ -1.07
CLN3-223ENST00000566472 MYOM1P52179 1685 aa8.37□□□□□ -1.07
CLN3-223ENST00000566472 CAMSAP1Q5T5Y3 1602 aa8.37□□□□□ -1.07
CLN3-223ENST00000566472 KNSTRNQ9Y448 316 aa8.37□□□□□ -1.07
CLN3-223ENST00000566472 ERVK-7P63135 1459 aa8.37□□□□□ -1.07
CLN3-223ENST00000566472 PIK3C2BO00750 1634 aa8.36□□□□□ -1.07
CLN3-223ENST00000566472 ADGRF5Q8IZF2 1346 aa8.35□□□□□ -1.07
CLN3-223ENST00000566472 IRX6P78412 446 aaPredicted RBP8.35□□□□□ -1.07
CLN3-223ENST00000566472 AMER1Q5JTC6 1135 aaPredicted RBP8.35□□□□□ -1.07
CLN3-223ENST00000566472 PUS7Q96PZ0 661 aaKnown RBP8.35□□□□□ -1.07
CLN3-223ENST00000566472 RBM19Q9Y4C8 960 aaKnown RBP8.35□□□□□ -1.07
CLN3-223ENST00000566472 ZFYVE9O95405 1425 aa8.35□□□□□ -1.07
CLN3-223ENST00000566472 PPLO60437 1756 aa8.35□□□□□ -1.07
CLN3-223ENST00000566472 ADGRB1O14514 1584 aa8.35□□□□□ -1.07
CLN3-223ENST00000566472 RICTORQ6R327 1708 aa8.34□□□□□ -1.07
CLN3-223ENST00000566472 CNGB1Q14028 1251 aaPredicted RBP8.34□□□□□ -1.07
CLN3-223ENST00000566472 CC2D1BQ5T0F9 858 aaKnown RBP8.34□□□□□ -1.07
CLN3-223ENST00000566472 CFAP70Q5T0N1 1121 aa8.34□□□□□ -1.07
CLN3-223ENST00000566472 REREQ9P2R6 1566 aa8.34□□□□□ -1.07
CLN3-223ENST00000566472 PPP2R1AP30153 589 aa8.33□□□□□ -1.08
CLN3-223ENST00000566472 C14orf93Q9H972 538 aaKnown RBP8.33□□□□□ -1.08
CLN3-223ENST00000566472 USP32Q8NFA0 1604 aa8.32□□□□□ -1.08
CLN3-223ENST00000566472 CENPJQ9HC77 1338 aaPredicted RBP8.32□□□□□ -1.08
CLN3-223ENST00000566472 FANCIQ9NVI1 1328 aa8.32□□□□□ -1.08
CLN3-223ENST00000566472 RRP1P56182 461 aaKnown RBP8.32□□□□□ -1.08
CLN3-223ENST00000566472 NGEFQ8N5V2 710 aa8.32□□□□□ -1.08
CLN3-223ENST00000566472 NEXMIFQ5QGS0 1516 aa8.32□□□□□ -1.08
CLN3-223ENST00000566472 AGLP35573 1532 aa8.31□□□□□ -1.08
CLN3-223ENST00000566472 WDR43Q15061 677 aaKnown RBP eCLIP8.31□□□□□ -1.08
CLN3-223ENST00000566472 RCAN3Q9UKA8 241 aa8.31□□□□□ -1.08
CLN3-223ENST00000566472 GGT6Q6P531 493 aa8.3□□□□□ -1.08
CLN3-223ENST00000566472 SLC52A1Q9NWF4 448 aa8.3□□□□□ -1.08
CLN3-223ENST00000566472 PPP6R1Q9UPN7 881 aa8.3□□□□□ -1.08
CLN3-223ENST00000566472 NINLQ9Y2I6 1382 aa8.3□□□□□ -1.08
CLN3-223ENST00000566472 SIGLEC1Q9BZZ2 1709 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 VGFO15240 615 aaPredicted RBP8.29□□□□□ -1.08
CLN3-223ENST00000566472 B4GALNT3Q6L9W6 998 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 POLR3AO14802 1390 aaPredicted RBP8.29□□□□□ -1.08
CLN3-223ENST00000566472 NSD2O96028 1365 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 DIP2BQ9P265 1576 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 QRICH2Q9H0J4 1663 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 ZNF521Q96K83 1311 aa8.29□□□□□ -1.08
CLN3-223ENST00000566472 CCDC136Q96JN2 1154 aa8.28□□□□□ -1.08
CLN3-223ENST00000566472 YEATS2Q9ULM3 1422 aa8.28□□□□□ -1.08
CLN3-223ENST00000566472 RAPGEF3O95398 923 aa8.27□□□□□ -1.09
CLN3-223ENST00000566472 CHGAP10645 457 aaKnown RBP8.27□□□□□ -1.09
CLN3-223ENST00000566472 ADAMTS8Q9UP79 889 aa8.27□□□□□ -1.09
CLN3-223ENST00000566472 PREX1Q8TCU6 1659 aa8.27□□□□□ -1.09
CLN3-223ENST00000566472 ARHGEF28Q8N1W1 1705 aaKnown RBP8.26□□□□□ -1.09
CLN3-223ENST00000566472 ANP32EQ9BTT0 268 aa8.26□□□□□ -1.09
CLN3-223ENST00000566472 NSD3Q9BZ95 1437 aa8.26□□□□□ -1.09
CLN3-223ENST00000566472 EVC2Q86UK5 1308 aa8.26□□□□□ -1.09
CLN3-223ENST00000566472 TMEM131LA2VDJ0 1609 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 RIMBP3CA6NJZ7 1639 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 RIMBP3BA6NNM3 1639 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 RIMBP3Q9UFD9 1639 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 ANKRD36BQ8N2N9 1353 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 PLEKHH1Q9ULM0 1364 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 TULP4Q9NRJ4 1543 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 NCBP3Q53F19 620 aaKnown RBP8.25□□□□□ -1.09
CLN3-223ENST00000566472 CARD14Q9BXL6 1004 aa8.25□□□□□ -1.09
CLN3-223ENST00000566472 GOLGA2Q08379 1002 aa8.24□□□□□ -1.09
CLN3-223ENST00000566472 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.24□□□□□ -1.09
CLN3-223ENST00000566472 CDCA7LQ96GN5 454 aa8.24□□□□□ -1.09
CLN3-223ENST00000566472 TRAK1Q9UPV9 953 aa8.24□□□□□ -1.09
CLN3-223ENST00000566472 CGNL1Q0VF96 1302 aa8.24□□□□□ -1.09
CLN3-223ENST00000566472 ATAD2Q6PL18 1390 aa8.23□□□□□ -1.09
CLN3-223ENST00000566472 SPATA31D1Q6ZQQ2 1576 aa8.23□□□□□ -1.09
CLN3-223ENST00000566472 IDI1Q13907 227 aa8.23□□□□□ -1.09
CLN3-223ENST00000566472 DUSP27Q5VZP5 1158 aa8.23□□□□□ -1.09
CLN3-223ENST00000566472 TRMT2AQ8IZ69 625 aaKnown RBP8.23□□□□□ -1.09
CLN3-223ENST00000566472 MED14O60244 1454 aa8.23□□□□□ -1.09
CLN3-223ENST00000566472 CLTCQ00610 1675 aaKnown RBP8.23□□□□□ -1.09
CLN3-223ENST00000566472 DLC1Q96QB1 1528 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms