RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 PPLO60437 1756 aa13.52□□□□□ -0.25
SMPD3-207ENST00000566466 NRXN3Q9Y4C0 1643 aa13.51□□□□□ -0.25
SMPD3-207ENST00000566466 RIMS2Q9UQ26 1411 aa13.51□□□□□ -0.25
SMPD3-207ENST00000566466 STRCQ7RTU9 1775 aa13.5□□□□□ -0.25
SMPD3-207ENST00000566466 LTKP29376 864 aa13.5□□□□□ -0.25
SMPD3-207ENST00000566466 MYOM2P54296 1465 aa13.49□□□□□ -0.25
SMPD3-207ENST00000566466 MSH5O43196 834 aa13.49□□□□□ -0.25
SMPD3-207ENST00000566466 MED14O60244 1454 aa13.48□□□□□ -0.25
SMPD3-207ENST00000566466 CCER1Q8TC90 406 aaPredicted RBP13.48□□□□□ -0.25
SMPD3-207ENST00000566466 SCAF11Q99590 1463 aaKnown RBP13.48□□□□□ -0.25
SMPD3-207ENST00000566466 PIK3C2GO75747 1445 aa13.47□□□□□ -0.25
SMPD3-207ENST00000566466 SETBP1Q9Y6X0 1596 aa13.46□□□□□ -0.25
SMPD3-207ENST00000566466 ASXL1Q8IXJ9 1541 aa13.46□□□□□ -0.25
SMPD3-207ENST00000566466 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.25
SMPD3-207ENST00000566466 SETD1AO15047 1707 aaKnown RBP13.46□□□□□ -0.25
SMPD3-207ENST00000566466 POLR1AO95602 1720 aaPredicted RBP13.46□□□□□ -0.25
SMPD3-207ENST00000566466 ADAMTS13Q76LX8 1427 aa13.46□□□□□ -0.26
SMPD3-207ENST00000566466 ADGRF5Q8IZF2 1346 aa13.45□□□□□ -0.26
SMPD3-207ENST00000566466 CHGAP10645 457 aaKnown RBP13.45□□□□□ -0.26
SMPD3-207ENST00000566466 NEUROD1Q13562 356 aa13.45□□□□□ -0.26
SMPD3-207ENST00000566466 RGL3Q3MIN7 710 aa13.45□□□□□ -0.26
SMPD3-207ENST00000566466 THEMISQ8N1K5 641 aaPredicted RBP13.45□□□□□ -0.26
SMPD3-207ENST00000566466 RPGRIP1LQ68CZ1 1315 aa13.44□□□□□ -0.26
SMPD3-207ENST00000566466 IQGAP1P46940 1657 aa13.44□□□□□ -0.26
SMPD3-207ENST00000566466 NUTM2DQ5VT03 806 aaPredicted RBP13.44□□□□□ -0.26
SMPD3-207ENST00000566466 PRAG1Q86YV5 1406 aa13.44□□□□□ -0.26
SMPD3-207ENST00000566466 PLEKHG1Q9ULL1 1385 aa13.44□□□□□ -0.26
SMPD3-207ENST00000566466 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
SMPD3-207ENST00000566466 NPHP4O75161 1426 aaPredicted RBP13.41□□□□□ -0.26
SMPD3-207ENST00000566466 NBPF8Q3BBV2 869 aa13.41□□□□□ -0.26
SMPD3-207ENST00000566466 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
SMPD3-207ENST00000566466 ADGRB1O14514 1584 aa13.41□□□□□ -0.26
SMPD3-207ENST00000566466 ZNF326Q5BKZ1 582 aaKnown RBP13.4□□□□□ -0.26
SMPD3-207ENST00000566466 TXNDC2Q86VQ3 553 aa13.4□□□□□ -0.26
SMPD3-207ENST00000566466 ALKQ9UM73 1620 aa13.39□□□□□ -0.27
SMPD3-207ENST00000566466 DCAF11Q8TEB1 546 aa13.39□□□□□ -0.27
SMPD3-207ENST00000566466 TONSLQ96HA7 1378 aa13.39□□□□□ -0.27
SMPD3-207ENST00000566466 ANKLE2Q86XL3 938 aa13.38□□□□□ -0.27
SMPD3-207ENST00000566466 TRPM1Q7Z4N2 1603 aa13.38□□□□□ -0.27
SMPD3-207ENST00000566466 PTPRUQ92729 1446 aa13.38□□□□□ -0.27
SMPD3-207ENST00000566466 DIP2AQ14689 1571 aa13.37□□□□□ -0.27
SMPD3-207ENST00000566466 METP08581 1390 aa13.37□□□□□ -0.27
SMPD3-207ENST00000566466 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMPD3-207ENST00000566466 TIMELESSQ9UNS1 1208 aa13.36□□□□□ -0.27
SMPD3-207ENST00000566466 NWD1Q149M9 1564 aa13.36□□□□□ -0.27
SMPD3-207ENST00000566466 RALGAPBQ86X10 1494 aa13.36□□□□□ -0.27
SMPD3-207ENST00000566466 VGFO15240 615 aaPredicted RBP13.35□□□□□ -0.27
SMPD3-207ENST00000566466 PPP1R15AO75807 674 aaPredicted RBP13.35□□□□□ -0.27
SMPD3-207ENST00000566466 KDM2AQ9Y2K7 1162 aa13.35□□□□□ -0.27
SMPD3-207ENST00000566466 XRN1Q8IZH2 1706 aaKnown RBP13.35□□□□□ -0.27
SMPD3-207ENST00000566466 KIAA1210Q9ULL0 1709 aa13.35□□□□□ -0.27
SMPD3-207ENST00000566466 LAMC1P11047 1609 aa13.35□□□□□ -0.27
SMPD3-207ENST00000566466 STRCP1A6NGW2 1772 aa13.35□□□□□ -0.27
SMPD3-207ENST00000566466 CFAP70Q5T0N1 1121 aa13.34□□□□□ -0.27
SMPD3-207ENST00000566466 C14orf93Q9H972 538 aaKnown RBP13.34□□□□□ -0.27
SMPD3-207ENST00000566466 EID1Q9Y6B2 187 aa13.34□□□□□ -0.27
SMPD3-207ENST00000566466 GPRASP1Q5JY77 1395 aa13.33□□□□□ -0.27
SMPD3-207ENST00000566466 STAC3Q96MF2 364 aa13.33□□□□□ -0.28
SMPD3-207ENST00000566466 NBPF1Q3BBV0 1214 aa13.32□□□□□ -0.28
SMPD3-207ENST00000566466 SLC26A8Q96RN1 970 aa13.32□□□□□ -0.28
SMPD3-207ENST00000566466 TBX22Q9Y458 520 aa13.31□□□□□ -0.28
SMPD3-207ENST00000566466 LTBP4Q8N2S1 1624 aa13.31□□□□□ -0.28
SMPD3-207ENST00000566466 TECPR2O15040 1411 aa13.3□□□□□ -0.28
SMPD3-207ENST00000566466 CPS1P31327 1500 aa13.29□□□□□ -0.28
SMPD3-207ENST00000566466 KNDC1Q76NI1 1749 aa13.29□□□□□ -0.28
SMPD3-207ENST00000566466 CHD2O14647 1828 aaKnown RBP13.29□□□□□ -0.28
SMPD3-207ENST00000566466 PIK3R4Q99570 1358 aa13.29□□□□□ -0.28
SMPD3-207ENST00000566466 HDGFP51858 240 aaKnown RBP13.28□□□□□ -0.28
SMPD3-207ENST00000566466 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
SMPD3-207ENST00000566466 TMEM132EQ6IEE7 984 aa13.28□□□□□ -0.28
SMPD3-207ENST00000566466 ZNF335Q9H4Z2 1342 aaPredicted RBP13.28□□□□□ -0.28
SMPD3-207ENST00000566466 LRPPRCP42704 1394 aaKnown RBP13.28□□□□□ -0.28
SMPD3-207ENST00000566466 YTHDC2Q9H6S0 1430 aaKnown RBP13.28□□□□□ -0.28
SMPD3-207ENST00000566466 POTEDQ86YR6 584 aa13.27□□□□□ -0.29
SMPD3-207ENST00000566466 ROBO2Q9HCK4 1378 aa13.27□□□□□ -0.29
SMPD3-207ENST00000566466 DLC1Q96QB1 1528 aa13.27□□□□□ -0.29
SMPD3-207ENST00000566466 PTCH1Q13635 1447 aa13.26□□□□□ -0.29
SMPD3-207ENST00000566466 ARHGEF28Q8N1W1 1705 aaKnown RBP13.25□□□□□ -0.29
SMPD3-207ENST00000566466 ABCC11Q96J66 1382 aa13.25□□□□□ -0.29
SMPD3-207ENST00000566466 PLEKHH1Q9ULM0 1364 aa13.25□□□□□ -0.29
SMPD3-207ENST00000566466 NKTRP30414 1462 aaKnown RBP13.24□□□□□ -0.29
SMPD3-207ENST00000566466 KCNA6P17658 529 aa13.24□□□□□ -0.29
SMPD3-207ENST00000566466 LRRC7Q96NW7 1537 aa13.23□□□□□ -0.29
SMPD3-207ENST00000566466 ROCK2O75116 1388 aaKnown RBP13.23□□□□□ -0.29
SMPD3-207ENST00000566466 XIRP1Q702N8 1843 aaKnown RBP13.23□□□□□ -0.29
SMPD3-207ENST00000566466 AMOTL2Q9Y2J4 779 aa13.22□□□□□ -0.29
SMPD3-207ENST00000566466 FAM135BQ49AJ0 1406 aa13.22□□□□□ -0.29
SMPD3-207ENST00000566466 SCAF1Q9H7N4 1312 aaKnown RBP13.21□□□□□ -0.29
SMPD3-207ENST00000566466 DMRT2Q9Y5R5 561 aa13.21□□□□□ -0.29
SMPD3-207ENST00000566466 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.21□□□□□ -0.3
SMPD3-207ENST00000566466 BCANQ96GW7 911 aa13.19□□□□□ -0.3
SMPD3-207ENST00000566466 NALCNQ8IZF0 1738 aa13.19□□□□□ -0.3
SMPD3-207ENST00000566466 ADGRB2O60241 1585 aa13.18□□□□□ -0.3
SMPD3-207ENST00000566466 WAPLQ7Z5K2 1190 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 SIRT1Q96EB6 747 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 RBM33Q96EV2 1170 aaKnown RBP13.17□□□□□ -0.3
SMPD3-207ENST00000566466 CARD11Q9BXL7 1154 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 STK26Q9P289 416 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 TRAK1Q9UPV9 953 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 TULP4Q9NRJ4 1543 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms