RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC26A8Q96RN1 970 aa25.94■■□□□ 1.74
CLN3-217ENST00000565354 NKTRP30414 1462 aaKnown RBP25.92■■□□□ 1.74
CLN3-217ENST00000565354 NWD1Q149M9 1564 aa25.92■■□□□ 1.74
CLN3-217ENST00000565354 RBM33Q96EV2 1170 aaKnown RBP25.91■■□□□ 1.74
CLN3-217ENST00000565354 ADGRB3O60242 1522 aa25.9■■□□□ 1.74
CLN3-217ENST00000565354 NOS1P29475 1434 aa25.88■■□□□ 1.73
CLN3-217ENST00000565354 GCC2Q8IWJ2 1684 aa25.87■■□□□ 1.73
CLN3-217ENST00000565354 PHLPP1O60346 1717 aa25.86■■□□□ 1.73
CLN3-217ENST00000565354 MSH6P52701 1360 aa25.85■■□□□ 1.73
CLN3-217ENST00000565354 NAIPQ13075 1403 aa25.84■■□□□ 1.73
CLN3-217ENST00000565354 SLC52A1Q9NWF4 448 aa25.83■■□□□ 1.73
CLN3-217ENST00000565354 SLAIN2Q9P270 581 aa25.83■■□□□ 1.73
CLN3-217ENST00000565354 HFM1A2PYH4 1435 aa25.82■■□□□ 1.72
CLN3-217ENST00000565354 CHD2O14647 1828 aaKnown RBP25.82■■□□□ 1.72
CLN3-217ENST00000565354 SETD1AO15047 1707 aaKnown RBP25.82■■□□□ 1.72
CLN3-217ENST00000565354 BCANQ96GW7 911 aa25.81■■□□□ 1.72
CLN3-217ENST00000565354 MYO5BQ9ULV0 1848 aa25.81■■□□□ 1.72
CLN3-217ENST00000565354 JCADQ9P266 1359 aa25.81■■□□□ 1.72
CLN3-217ENST00000565354 UNC13BO14795 1591 aa25.8■■□□□ 1.72
CLN3-217ENST00000565354 ZFYVE9O95405 1425 aa25.78■■□□□ 1.72
CLN3-217ENST00000565354 RPRD2Q5VT52 1461 aaKnown RBP25.77■■□□□ 1.72
CLN3-217ENST00000565354 PLEKHG1Q9ULL1 1385 aa25.76■■□□□ 1.71
CLN3-217ENST00000565354 COL16A1Q07092 1604 aaPredicted RBP25.76■■□□□ 1.71
CLN3-217ENST00000565354 NUP155O75694 1391 aa25.75■■□□□ 1.71
CLN3-217ENST00000565354 RIMS2Q9UQ26 1411 aa25.72■■□□□ 1.71
CLN3-217ENST00000565354 TRIM52Q96A61 297 aa25.72■■□□□ 1.71
CLN3-217ENST00000565354 TMEM131LA2VDJ0 1609 aa25.71■■□□□ 1.71
CLN3-217ENST00000565354 PPP1R15AO75807 674 aaPredicted RBP25.71■■□□□ 1.71
CLN3-217ENST00000565354 IQGAP3Q86VI3 1631 aa25.7■■□□□ 1.71
CLN3-217ENST00000565354 HDGFP51858 240 aaKnown RBP25.7■■□□□ 1.7
CLN3-217ENST00000565354 NCOA3Q9Y6Q9 1424 aa25.7■■□□□ 1.7
CLN3-217ENST00000565354 TBX22Q9Y458 520 aa25.68■■□□□ 1.7
CLN3-217ENST00000565354 SETD5Q9C0A6 1442 aa25.68■■□□□ 1.7
CLN3-217ENST00000565354 LRP6O75581 1613 aa25.67■■□□□ 1.7
CLN3-217ENST00000565354 SPATA31A6Q5VVP1 1343 aa25.66■■□□□ 1.7
CLN3-217ENST00000565354 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.66■■□□□ 1.7
CLN3-217ENST00000565354 AHDC1Q5TGY3 1603 aaPredicted RBP25.64■■□□□ 1.7
CLN3-217ENST00000565354 C14orf37Q86TY3 774 aa25.64■■□□□ 1.7
CLN3-217ENST00000565354 SHPRHQ149N8 1683 aa25.64■■□□□ 1.69
CLN3-217ENST00000565354 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.63■■□□□ 1.69
CLN3-217ENST00000565354 DIP2AQ14689 1571 aa25.62■■□□□ 1.69
CLN3-217ENST00000565354 MEX3CQ5U5Q3 659 aaKnown RBP25.62■■□□□ 1.69
CLN3-217ENST00000565354 ZNF772Q68DY9 489 aaPredicted RBP25.62■■□□□ 1.69
CLN3-217ENST00000565354 CADPS2Q86UW7 1296 aa25.62■■□□□ 1.69
CLN3-217ENST00000565354 ADAMTS13Q76LX8 1427 aa25.62■■□□□ 1.69
CLN3-217ENST00000565354 ACIN1Q9UKV3 1341 aaKnown RBP25.62■■□□□ 1.69
CLN3-217ENST00000565354 C19orf44Q9H6X5 657 aa25.6■■□□□ 1.69
CLN3-217ENST00000565354 ATF3P18847 181 aa25.59■■□□□ 1.69
CLN3-217ENST00000565354 PIK3R4Q99570 1358 aa25.58■■□□□ 1.69
CLN3-217ENST00000565354 RAB3GAP2Q9H2M9 1393 aa25.58■■□□□ 1.69
CLN3-217ENST00000565354 CHGAP10645 457 aaKnown RBP25.58■■□□□ 1.69
CLN3-217ENST00000565354 TRIM26Q12899 539 aaPredicted RBP25.58■■□□□ 1.69
CLN3-217ENST00000565354 UPF1Q92900 1129 aaKnown RBP eCLIP25.58■■□□□ 1.69
CLN3-217ENST00000565354 E9PCH4 1651 aa25.58■■□□□ 1.68
CLN3-217ENST00000565354 SLC4A1APQ9BWU0 796 aaKnown RBP25.56■■□□□ 1.68
CLN3-217ENST00000565354 NUTM2DQ5VT03 806 aaPredicted RBP25.55■■□□□ 1.68
CLN3-217ENST00000565354 TRPM2O94759 1503 aa25.53■■□□□ 1.68
CLN3-217ENST00000565354 BRINP3Q76B58 766 aa25.51■■□□□ 1.67
CLN3-217ENST00000565354 RXRBP28702 533 aa25.5■■□□□ 1.67
CLN3-217ENST00000565354 AMOTL2Q9Y2J4 779 aa25.5■■□□□ 1.67
CLN3-217ENST00000565354 PTPRUQ92729 1446 aa25.49■■□□□ 1.67
CLN3-217ENST00000565354 CDK12Q9NYV4 1490 aaPredicted RBP25.48■■□□□ 1.67
CLN3-217ENST00000565354 DCCP43146 1447 aa25.48■■□□□ 1.67
CLN3-217ENST00000565354 NUTM2BA6NNL0 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-217ENST00000565354 NUTM2EB1AL46 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-217ENST00000565354 NUTM2AQ8IVF1 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-217ENST00000565354 MPHOSPH9Q99550 1183 aa25.46■■□□□ 1.67
CLN3-217ENST00000565354 SPHKAPQ2M3C7 1700 aa25.46■■□□□ 1.67
CLN3-217ENST00000565354 HRCP23327 699 aa25.45■■□□□ 1.66
CLN3-217ENST00000565354 ASXL1Q8IXJ9 1541 aa25.45■■□□□ 1.66
CLN3-217ENST00000565354 XRN1Q8IZH2 1706 aaKnown RBP25.45■■□□□ 1.66
CLN3-217ENST00000565354 NHSL1Q5SYE7 1610 aa25.44■■□□□ 1.66
CLN3-217ENST00000565354 NRXN3Q9Y4C0 1643 aa25.43■■□□□ 1.66
CLN3-217ENST00000565354 AFF2P51816 1311 aa25.42■■□□□ 1.66
CLN3-217ENST00000565354 MST1RQ04912 1400 aa25.41■■□□□ 1.66
CLN3-217ENST00000565354 SETBP1Q9Y6X0 1596 aa25.39■■□□□ 1.66
CLN3-217ENST00000565354 FOXD1Q16676 465 aa25.39■■□□□ 1.66
CLN3-217ENST00000565354 LRRC59Q96AG4 307 aaKnown RBP25.37■■□□□ 1.65
CLN3-217ENST00000565354 METP08581 1390 aa25.32■■□□□ 1.64
CLN3-217ENST00000565354 RGS12O14924 1447 aa25.32■■□□□ 1.64
CLN3-217ENST00000565354 ADGRL3Q9HAR2 1447 aa25.32■■□□□ 1.64
CLN3-217ENST00000565354 C8orf37Q96NL8 207 aa25.32■■□□□ 1.64
CLN3-217ENST00000565354 PNPLA6Q8IY17 1366 aa25.31■■□□□ 1.64
CLN3-217ENST00000565354 CLTCL1P53675 1640 aa25.31■■□□□ 1.64
CLN3-217ENST00000565354 QTRT2Q9H974 415 aaKnown RBP25.31■■□□□ 1.64
CLN3-217ENST00000565354 NALCNQ8IZF0 1738 aa25.31■■□□□ 1.64
CLN3-217ENST00000565354 RBM6P78332 1123 aaKnown RBP25.3■■□□□ 1.64
CLN3-217ENST00000565354 DDX17Q92841 729 aaKnown RBP25.3■■□□□ 1.64
CLN3-217ENST00000565354 ZNF326Q5BKZ1 582 aaKnown RBP25.28■■□□□ 1.64
CLN3-217ENST00000565354 CCDC144AA2RUR9 1427 aa25.28■■□□□ 1.64
CLN3-217ENST00000565354 SRCAPQ6ZRS2 3230 aa25.27■■□□□ 1.64
CLN3-217ENST00000565354 KIF1BO60333 1816 aa25.27■■□□□ 1.64
CLN3-217ENST00000565354 PCGF6Q9BYE7 350 aa25.25■■□□□ 1.63
CLN3-217ENST00000565354 LAMC1P11047 1609 aa25.24■■□□□ 1.63
CLN3-217ENST00000565354 NEXMIFQ5QGS0 1516 aa25.23■■□□□ 1.63
CLN3-217ENST00000565354 NGLY1Q96IV0 654 aa25.22■■□□□ 1.63
CLN3-217ENST00000565354 C1orf167Q5SNV9 1468 aa25.21■■□□□ 1.63
CLN3-217ENST00000565354 ADAMTS2O95450 1211 aa25.2■■□□□ 1.62
CLN3-217ENST00000565354 ATAD2Q6PL18 1390 aa25.17■■□□□ 1.62
CLN3-217ENST00000565354 PTCH1Q13635 1447 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms