RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ARHGAP23Q9P227 1491 aa12.84□□□□□ -0.35
VPS39-207ENST00000563692 UNC13BO14795 1591 aa12.83□□□□□ -0.36
VPS39-207ENST00000563692 BCANQ96GW7 911 aa12.83□□□□□ -0.36
VPS39-207ENST00000563692 PIK3C2BO00750 1634 aa12.83□□□□□ -0.36
VPS39-207ENST00000563692 SCAF1Q9H7N4 1312 aaKnown RBP12.83□□□□□ -0.36
VPS39-207ENST00000563692 TET3O43151 1660 aa12.83□□□□□ -0.36
VPS39-207ENST00000563692 PPP1R15AO75807 674 aaPredicted RBP12.82□□□□□ -0.36
VPS39-207ENST00000563692 CHGAP10645 457 aaKnown RBP12.82□□□□□ -0.36
VPS39-207ENST00000563692 SYNMO15061 1565 aa12.81□□□□□ -0.36
VPS39-207ENST00000563692 ADGRB3O60242 1522 aa12.81□□□□□ -0.36
VPS39-207ENST00000563692 TONSLQ96HA7 1378 aa12.81□□□□□ -0.36
VPS39-207ENST00000563692 KDM5AP29375 1690 aaKnown RBP12.8□□□□□ -0.36
VPS39-207ENST00000563692 PIP4K2BP78356 416 aa12.79□□□□□ -0.36
VPS39-207ENST00000563692 IQGAP3Q86VI3 1631 aa12.78□□□□□ -0.36
VPS39-207ENST00000563692 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.78□□□□□ -0.36
VPS39-207ENST00000563692 SLC26A8Q96RN1 970 aa12.76□□□□□ -0.37
VPS39-207ENST00000563692 RIMS2Q9UQ26 1411 aa12.76□□□□□ -0.37
VPS39-207ENST00000563692 KCNA6P17658 529 aa12.75□□□□□ -0.37
VPS39-207ENST00000563692 LRRC7Q96NW7 1537 aa12.75□□□□□ -0.37
VPS39-207ENST00000563692 ANKRD30BQ9BXX2 1392 aa12.74□□□□□ -0.37
VPS39-207ENST00000563692 E9PCH4 1651 aa12.73□□□□□ -0.37
VPS39-207ENST00000563692 PLEKHG1Q9ULL1 1385 aa12.73□□□□□ -0.37
VPS39-207ENST00000563692 FOXD1Q16676 465 aa12.73□□□□□ -0.37
VPS39-207ENST00000563692 SENP3Q9H4L4 574 aaPredicted RBP12.73□□□□□ -0.37
VPS39-207ENST00000563692 ZFYVE9O95405 1425 aa12.72□□□□□ -0.37
VPS39-207ENST00000563692 DISP3Q9P2K9 1392 aa12.72□□□□□ -0.37
VPS39-207ENST00000563692 ZNF326Q5BKZ1 582 aaKnown RBP12.72□□□□□ -0.37
VPS39-207ENST00000563692 PROSER2Q86WR7 435 aaPredicted RBP12.72□□□□□ -0.37
VPS39-207ENST00000563692 TMEM131LA2VDJ0 1609 aa12.71□□□□□ -0.37
VPS39-207ENST00000563692 NUTM2DQ5VT03 806 aaPredicted RBP12.71□□□□□ -0.37
VPS39-207ENST00000563692 HSPA1LP34931 641 aa12.7□□□□□ -0.38
VPS39-207ENST00000563692 DIEXFQ68CQ4 756 aaKnown RBP12.7□□□□□ -0.38
VPS39-207ENST00000563692 TMEM94Q12767 1356 aa12.69□□□□□ -0.38
VPS39-207ENST00000563692 TBX22Q9Y458 520 aa12.69□□□□□ -0.38
VPS39-207ENST00000563692 NKTRP30414 1462 aaKnown RBP12.68□□□□□ -0.38
VPS39-207ENST00000563692 STRCP1A6NGW2 1772 aa12.68□□□□□ -0.38
VPS39-207ENST00000563692 C14orf37Q86TY3 774 aa12.67□□□□□ -0.38
VPS39-207ENST00000563692 MSH6P52701 1360 aa12.67□□□□□ -0.38
VPS39-207ENST00000563692 L3MBTL2Q969R5 705 aa12.66□□□□□ -0.38
VPS39-207ENST00000563692 SPHKAPQ2M3C7 1700 aa12.65□□□□□ -0.38
VPS39-207ENST00000563692 RBM33Q96EV2 1170 aaKnown RBP12.65□□□□□ -0.38
VPS39-207ENST00000563692 TRPM2O94759 1503 aa12.65□□□□□ -0.38
VPS39-207ENST00000563692 PIK3R4Q99570 1358 aa12.65□□□□□ -0.38
VPS39-207ENST00000563692 MYO5BQ9ULV0 1848 aa12.65□□□□□ -0.39
VPS39-207ENST00000563692 DIP2AQ14689 1571 aa12.64□□□□□ -0.39
VPS39-207ENST00000563692 NWD1Q149M9 1564 aa12.64□□□□□ -0.39
VPS39-207ENST00000563692 ADAMTS13Q76LX8 1427 aa12.63□□□□□ -0.39
VPS39-207ENST00000563692 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
VPS39-207ENST00000563692 AMOTL2Q9Y2J4 779 aa12.61□□□□□ -0.39
VPS39-207ENST00000563692 ALKQ9UM73 1620 aa12.61□□□□□ -0.39
VPS39-207ENST00000563692 FAM135BQ49AJ0 1406 aa12.61□□□□□ -0.39
VPS39-207ENST00000563692 NCOA3Q9Y6Q9 1424 aa12.61□□□□□ -0.39
VPS39-207ENST00000563692 CLTCL1P53675 1640 aa12.6□□□□□ -0.39
VPS39-207ENST00000563692 ATF3P18847 181 aa12.6□□□□□ -0.39
VPS39-207ENST00000563692 RPGRIP1LQ68CZ1 1315 aa12.6□□□□□ -0.39
VPS39-207ENST00000563692 CADPS2Q86UW7 1296 aa12.59□□□□□ -0.39
VPS39-207ENST00000563692 PHF23Q9BUL5 403 aaPredicted RBP12.59□□□□□ -0.39
VPS39-207ENST00000563692 C19orf44Q9H6X5 657 aa12.59□□□□□ -0.39
VPS39-207ENST00000563692 SLAIN2Q9P270 581 aa12.59□□□□□ -0.39
VPS39-207ENST00000563692 CCDC144AA2RUR9 1427 aa12.59□□□□□ -0.39
VPS39-207ENST00000563692 SETBP1Q9Y6X0 1596 aa12.58□□□□□ -0.4
VPS39-207ENST00000563692 CHD2O14647 1828 aaKnown RBP12.57□□□□□ -0.4
VPS39-207ENST00000563692 KIF1BO60333 1816 aa12.56□□□□□ -0.4
VPS39-207ENST00000563692 XIRP1Q702N8 1843 aaKnown RBP12.56□□□□□ -0.4
VPS39-207ENST00000563692 EIF4G2P78344 907 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS39-207ENST00000563692 NEXMIFQ5QGS0 1516 aa12.56□□□□□ -0.4
VPS39-207ENST00000563692 RGL3Q3MIN7 710 aa12.55□□□□□ -0.4
VPS39-207ENST00000563692 METP08581 1390 aa12.55□□□□□ -0.4
VPS39-207ENST00000563692 PTPRUQ92729 1446 aa12.54□□□□□ -0.4
VPS39-207ENST00000563692 ILDR2Q71H61 639 aa12.54□□□□□ -0.4
VPS39-207ENST00000563692 DCAF11Q8TEB1 546 aa12.54□□□□□ -0.4
VPS39-207ENST00000563692 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
VPS39-207ENST00000563692 MED1Q15648 1581 aaPredicted RBP12.53□□□□□ -0.4
VPS39-207ENST00000563692 NBPF8Q3BBV2 869 aa12.52□□□□□ -0.41
VPS39-207ENST00000563692 KDM2AQ9Y2K7 1162 aa12.52□□□□□ -0.41
VPS39-207ENST00000563692 DCCP43146 1447 aa12.52□□□□□ -0.41
VPS39-207ENST00000563692 NRXN3Q9Y4C0 1643 aa12.51□□□□□ -0.41
VPS39-207ENST00000563692 ROBO1Q9Y6N7 1651 aa12.51□□□□□ -0.41
VPS39-207ENST00000563692 SOCS7O14512 581 aa12.5□□□□□ -0.41
VPS39-207ENST00000563692 XRN1Q8IZH2 1706 aaKnown RBP12.49□□□□□ -0.41
VPS39-207ENST00000563692 HSPA5P11021 654 aaKnown RBP12.49□□□□□ -0.41
VPS39-207ENST00000563692 PTCH1Q13635 1447 aa12.48□□□□□ -0.41
VPS39-207ENST00000563692 SPATA31E1Q6ZUB1 1445 aa12.48□□□□□ -0.41
VPS39-207ENST00000563692 ADGRL3Q9HAR2 1447 aa12.48□□□□□ -0.41
VPS39-207ENST00000563692 JCADQ9P266 1359 aa12.48□□□□□ -0.41
VPS39-207ENST00000563692 HIRIP3Q9BW71 556 aaPredicted RBP12.48□□□□□ -0.41
VPS39-207ENST00000563692 ADGRF5Q8IZF2 1346 aa12.47□□□□□ -0.41
VPS39-207ENST00000563692 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.47□□□□□ -0.41
VPS39-207ENST00000563692 BRINP3Q76B58 766 aa12.46□□□□□ -0.41
VPS39-207ENST00000563692 ROBO2Q9HCK4 1378 aa12.45□□□□□ -0.42
VPS39-207ENST00000563692 DDX10Q13206 875 aaKnown RBP12.45□□□□□ -0.42
VPS39-207ENST00000563692 MIER1Q8N108 512 aa12.45□□□□□ -0.42
VPS39-207ENST00000563692 CARD11Q9BXL7 1154 aa12.45□□□□□ -0.42
VPS39-207ENST00000563692 STK26Q9P289 416 aa12.45□□□□□ -0.42
VPS39-207ENST00000563692 PPLO60437 1756 aa12.45□□□□□ -0.42
VPS39-207ENST00000563692 PHLPP1O60346 1717 aa12.44□□□□□ -0.42
VPS39-207ENST00000563692 MST1RQ04912 1400 aa12.44□□□□□ -0.42
VPS39-207ENST00000563692 SPATA31A6Q5VVP1 1343 aa12.43□□□□□ -0.42
VPS39-207ENST00000563692 MEX3CQ5U5Q3 659 aaKnown RBP12.43□□□□□ -0.42
VPS39-207ENST00000563692 PRAG1Q86YV5 1406 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 188.5 ms