RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	VPS8	Q8N3P4	1428 aa		13.3	□□□□□ -0.28
CKLF-208	ENST00000563092	NWD1	Q149M9	1564 aa		13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	ROBO1	Q9Y6N7	1651 aa		13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	KIF15	Q9NS87	1388 aa		13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	ABCC5	O15440	1437 aa		13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	NKTR	P30414	1462 aa	Known RBP	13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	EFCAB6	Q5THR3	1501 aa		13.29	□□□□□ -0.28
CKLF-208	ENST00000563092	KANK4	Q5T7N3	995 aa	Predicted RBP	13.27	□□□□□ -0.29
CKLF-208	ENST00000563092	NOS1	P29475	1434 aa		13.27	□□□□□ -0.29
CKLF-208	ENST00000563092	CROCC2	H7BZ55	1655 aa		13.26	□□□□□ -0.29
CKLF-208	ENST00000563092	IDI1	Q13907	227 aa		13.26	□□□□□ -0.29
CKLF-208	ENST00000563092	CFAP65	Q6ZU64	1925 aa	Known RBP	13.26	□□□□□ -0.29
CKLF-208	ENST00000563092	ADGRB3	O60242	1522 aa		13.23	□□□□□ -0.29
CKLF-208	ENST00000563092	PROSER2	Q86WR7	435 aa	Predicted RBP	13.23	□□□□□ -0.29
CKLF-208	ENST00000563092	JCAD	Q9P266	1359 aa		13.22	□□□□□ -0.29
CKLF-208	ENST00000563092	SLC26A8	Q96RN1	970 aa		13.22	□□□□□ -0.29
CKLF-208	ENST00000563092	RRP7BP	Q9NSQ0	103 aa		13.22	□□□□□ -0.29
CKLF-208	ENST00000563092	ZFYVE9	O95405	1425 aa		13.22	□□□□□ -0.29
CKLF-208	ENST00000563092	DAPK1	P53355	1430 aa		13.22	□□□□□ -0.29
CKLF-208	ENST00000563092	KANK1	Q14678	1352 aa		13.21	□□□□□ -0.29
CKLF-208	ENST00000563092	SLAIN2	Q9P270	581 aa		13.21	□□□□□ -0.29
CKLF-208	ENST00000563092	NCOA3	Q9Y6Q9	1424 aa		13.21	□□□□□ -0.3
CKLF-208	ENST00000563092	COL16A1	Q07092	1604 aa	Predicted RBP	13.21	□□□□□ -0.3
CKLF-208	ENST00000563092	RBM33	Q96EV2	1170 aa	Known RBP	13.2	□□□□□ -0.3
CKLF-208	ENST00000563092	SLC52A1	Q9NWF4	448 aa		13.2	□□□□□ -0.3
CKLF-208	ENST00000563092	PTPN23	Q9H3S7	1636 aa		13.2	□□□□□ -0.3
CKLF-208	ENST00000563092	MSH6	P52701	1360 aa		13.2	□□□□□ -0.3
CKLF-208	ENST00000563092	STAG3	Q9UJ98	1225 aa		13.19	□□□□□ -0.3
CKLF-208	ENST00000563092	FGD6	Q6ZV73	1430 aa		13.19	□□□□□ -0.3
CKLF-208	ENST00000563092	SETD1A	O15047	1707 aa	Known RBP	13.19	□□□□□ -0.3
CKLF-208	ENST00000563092	PHLPP1	O60346	1717 aa		13.19	□□□□□ -0.3
CKLF-208	ENST00000563092	PLEKHG1	Q9ULL1	1385 aa		13.19	□□□□□ -0.3
CKLF-208	ENST00000563092	RPRD2	Q5VT52	1461 aa	Known RBP	13.18	□□□□□ -0.3
CKLF-208	ENST00000563092	LRP6	O75581	1613 aa		13.18	□□□□□ -0.3
CKLF-208	ENST00000563092	CHD2	O14647	1828 aa	Known RBP	13.18	□□□□□ -0.3
CKLF-208	ENST00000563092	ANKRD30A	Q9BXX3	1397 aa		13.17	□□□□□ -0.3
CKLF-208	ENST00000563092	SPATA31A6	Q5VVP1	1343 aa		13.16	□□□□□ -0.3
CKLF-208	ENST00000563092	ADGRL2	O95490	1459 aa		13.16	□□□□□ -0.3
CKLF-208	ENST00000563092	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.15	□□□□□ -0.3
CKLF-208	ENST00000563092	MYCN	P04198	464 aa	Predicted RBP	13.15	□□□□□ -0.3
CKLF-208	ENST00000563092	TBX22	Q9Y458	520 aa		13.15	□□□□□ -0.3
CKLF-208	ENST00000563092	TMEM131L	A2VDJ0	1609 aa		13.14	□□□□□ -0.31
CKLF-208	ENST00000563092	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
CKLF-208	ENST00000563092	ADAMTS13	Q76LX8	1427 aa		13.13	□□□□□ -0.31
CKLF-208	ENST00000563092	RIMS2	Q9UQ26	1411 aa		13.13	□□□□□ -0.31
CKLF-208	ENST00000563092	SHPRH	Q149N8	1683 aa		13.12	□□□□□ -0.31
CKLF-208	ENST00000563092	DIP2A	Q14689	1571 aa		13.11	□□□□□ -0.31
CKLF-208	ENST00000563092	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.11	□□□□□ -0.31
CKLF-208	ENST00000563092	PIK3R4	Q99570	1358 aa		13.11	□□□□□ -0.31
CKLF-208	ENST00000563092	ZNF772	Q68DY9	489 aa	Predicted RBP	13.11	□□□□□ -0.31
CKLF-208	ENST00000563092	HDGF	P51858	240 aa	Known RBP	13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	CADPS2	Q86UW7	1296 aa		13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	C19orf44	Q9H6X5	657 aa		13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	CHIC2	Q9UKJ5	165 aa		13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	MYO5B	Q9ULV0	1848 aa		13.09	□□□□□ -0.31
CKLF-208	ENST00000563092	GCC2	Q8IWJ2	1684 aa		13.08	□□□□□ -0.31
CKLF-208	ENST00000563092	ANKRD50	Q9ULJ7	1429 aa		13.08	□□□□□ -0.32
CKLF-208	ENST00000563092	LOC105371045	A0A1W2PR82	267 aa		13.08	□□□□□ -0.32
CKLF-208	ENST00000563092	DCC	P43146	1447 aa		13.07	□□□□□ -0.32
CKLF-208	ENST00000563092	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.07	□□□□□ -0.32
CKLF-208	ENST00000563092	BRINP3	Q76B58	766 aa		13.06	□□□□□ -0.32
CKLF-208	ENST00000563092	BCAN	Q96GW7	911 aa		13.06	□□□□□ -0.32
CKLF-208	ENST00000563092	UNC13B	O14795	1591 aa		13.06	□□□□□ -0.32
CKLF-208	ENST00000563092	SRCAP	Q6ZRS2	3230 aa		13.05	□□□□□ -0.32
CKLF-208	ENST00000563092	PTPRU	Q92729	1446 aa		13.05	□□□□□ -0.32
CKLF-208	ENST00000563092	SETD5	Q9C0A6	1442 aa		13.05	□□□□□ -0.32
CKLF-208	ENST00000563092	PPP1R15A	O75807	674 aa	Predicted RBP	13.04	□□□□□ -0.32
CKLF-208	ENST00000563092	RXRB	P28702	533 aa		13.04	□□□□□ -0.32
CKLF-208	ENST00000563092	RBM42	Q9BTD8	480 aa	Known RBP	13.04	□□□□□ -0.32
CKLF-208	ENST00000563092	TRPM2	O94759	1503 aa		13.03	□□□□□ -0.32
CKLF-208	ENST00000563092	ATF3	P18847	181 aa		13.03	□□□□□ -0.32
CKLF-208	ENST00000563092	TRIM52	Q96A61	297 aa		13.03	□□□□□ -0.32
CKLF-208	ENST00000563092	ASXL1	Q8IXJ9	1541 aa		13.03	□□□□□ -0.32
CKLF-208	ENST00000563092	MEX3C	Q5U5Q3	659 aa	Known RBP	13.02	□□□□□ -0.33
CKLF-208	ENST00000563092	MST1R	Q04912	1400 aa		13.02	□□□□□ -0.33
CKLF-208	ENST00000563092	NHSL1	Q5SYE7	1610 aa		13.02	□□□□□ -0.33
CKLF-208	ENST00000563092		E9PCH4	1651 aa		13.02	□□□□□ -0.33
CKLF-208	ENST00000563092	XRN1	Q8IZH2	1706 aa	Known RBP	13.02	□□□□□ -0.33
CKLF-208	ENST00000563092	AMOTL2	Q9Y2J4	779 aa		13.01	□□□□□ -0.33
CKLF-208	ENST00000563092	NRXN3	Q9Y4C0	1643 aa		13.01	□□□□□ -0.33
CKLF-208	ENST00000563092	SETBP1	Q9Y6X0	1596 aa		13	□□□□□ -0.33
CKLF-208	ENST00000563092	C14orf37	Q86TY3	774 aa		13	□□□□□ -0.33
CKLF-208	ENST00000563092	IQGAP3	Q86VI3	1631 aa		12.99	□□□□□ -0.33
CKLF-208	ENST00000563092	RGS12	O14924	1447 aa		12.99	□□□□□ -0.33
CKLF-208	ENST00000563092	AFF2	P51816	1311 aa		12.99	□□□□□ -0.33
CKLF-208	ENST00000563092	POLA2	Q14181	598 aa		12.98	□□□□□ -0.33
CKLF-208	ENST00000563092	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.98	□□□□□ -0.33
CKLF-208	ENST00000563092	ROCK1	Q13464	1354 aa		12.97	□□□□□ -0.33
CKLF-208	ENST00000563092	LAMC1	P11047	1609 aa		12.97	□□□□□ -0.33
CKLF-208	ENST00000563092	PNPLA6	Q8IY17	1366 aa		12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	NUTM2E	B1AL46	878 aa	Predicted RBP	12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	RBM6	P78332	1123 aa	Known RBP	12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	LRRC59	Q96AG4	307 aa	Known RBP	12.96	□□□□□ -0.33
CKLF-208	ENST00000563092	CHGA	P10645	457 aa	Known RBP	12.95	□□□□□ -0.34
CKLF-208	ENST00000563092	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.95	□□□□□ -0.34
CKLF-208	ENST00000563092	ADGRL3	Q9HAR2	1447 aa		12.95	□□□□□ -0.34
CKLF-208	ENST00000563092	MET	P08581	1390 aa		12.94	□□□□□ -0.34

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