RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 MYO3AQ8NEV4 1616 aa19.33■□□□□ 0.69
VPS39-206ENST00000562662 NLRP1Q9C000 1473 aa19.33■□□□□ 0.68
VPS39-206ENST00000562662 LAMC1P11047 1609 aa19.33■□□□□ 0.68
VPS39-206ENST00000562662 ZNF316A6NFI3 1004 aaPredicted RBP19.3■□□□□ 0.68
VPS39-206ENST00000562662 SETD1BQ9UPS6 1966 aaKnown RBP19.3■□□□□ 0.68
VPS39-206ENST00000562662 ADGRF5Q8IZF2 1346 aa19.28■□□□□ 0.68
VPS39-206ENST00000562662 ZFYVE9O95405 1425 aa19.28■□□□□ 0.68
VPS39-206ENST00000562662 GPRASP1Q5JY77 1395 aa19.28■□□□□ 0.68
VPS39-206ENST00000562662 ZNF142P52746 1687 aaPredicted RBP19.27■□□□□ 0.68
VPS39-206ENST00000562662 PIK3C2GO75747 1445 aa19.27■□□□□ 0.68
VPS39-206ENST00000562662 PTPRMP28827 1452 aa19.27■□□□□ 0.67
VPS39-206ENST00000562662 ROCK2O75116 1388 aaKnown RBP19.25■□□□□ 0.67
VPS39-206ENST00000562662 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
VPS39-206ENST00000562662 STAG3Q9UJ98 1225 aa19.25■□□□□ 0.67
VPS39-206ENST00000562662 IQGAP1P46940 1657 aa19.24■□□□□ 0.67
VPS39-206ENST00000562662 CEP170BQ9Y4F5 1589 aaPredicted RBP19.24■□□□□ 0.67
VPS39-206ENST00000562662 RIMS2Q9UQ26 1411 aa19.24■□□□□ 0.67
VPS39-206ENST00000562662 NBPF1Q3BBV0 1214 aa19.23■□□□□ 0.67
VPS39-206ENST00000562662 SETBP1Q9Y6X0 1596 aa19.22■□□□□ 0.67
VPS39-206ENST00000562662 VGFO15240 615 aaPredicted RBP19.21■□□□□ 0.67
VPS39-206ENST00000562662 HSPA5P11021 654 aaKnown RBP19.21■□□□□ 0.67
VPS39-206ENST00000562662 EIF4G2P78344 907 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS39-206ENST00000562662 USP47Q96K76 1375 aa19.2■□□□□ 0.66
VPS39-206ENST00000562662 CARD11Q9BXL7 1154 aa19.2■□□□□ 0.66
VPS39-206ENST00000562662 SLIT1O75093 1534 aa19.2■□□□□ 0.66
VPS39-206ENST00000562662 SETD1AO15047 1707 aaKnown RBP19.2■□□□□ 0.66
VPS39-206ENST00000562662 POLR1AO95602 1720 aaPredicted RBP19.2■□□□□ 0.66
VPS39-206ENST00000562662 NUTM2DQ5VT03 806 aaPredicted RBP19.19■□□□□ 0.66
VPS39-206ENST00000562662 ARHGAP23Q9P227 1491 aa19.19■□□□□ 0.66
VPS39-206ENST00000562662 TMEM2Q9UHN6 1383 aa19.19■□□□□ 0.66
VPS39-206ENST00000562662 NRXN3Q9Y4C0 1643 aa19.18■□□□□ 0.66
VPS39-206ENST00000562662 HIRIP3Q9BW71 556 aaPredicted RBP19.18■□□□□ 0.66
VPS39-206ENST00000562662 ADGRB1O14514 1584 aa19.18■□□□□ 0.66
VPS39-206ENST00000562662 CFAP70Q5T0N1 1121 aa19.17■□□□□ 0.66
VPS39-206ENST00000562662 C14orf93Q9H972 538 aaKnown RBP19.16■□□□□ 0.66
VPS39-206ENST00000562662 ASXL1Q8IXJ9 1541 aa19.15■□□□□ 0.66
VPS39-206ENST00000562662 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.15■□□□□ 0.66
VPS39-206ENST00000562662 ALKQ9UM73 1620 aa19.14■□□□□ 0.66
VPS39-206ENST00000562662 SCAF11Q99590 1463 aaKnown RBP19.14■□□□□ 0.65
VPS39-206ENST00000562662 KDM4FA0A1W2PPD8 638 aa19.13■□□□□ 0.65
VPS39-206ENST00000562662 THEMISQ8N1K5 641 aaPredicted RBP19.11■□□□□ 0.65
VPS39-206ENST00000562662 HDGFP51858 240 aaKnown RBP19.1■□□□□ 0.65
VPS39-206ENST00000562662 ARHGEF28Q8N1W1 1705 aaKnown RBP19.1■□□□□ 0.65
VPS39-206ENST00000562662 PLEKHG1Q9ULL1 1385 aa19.08■□□□□ 0.65
VPS39-206ENST00000562662 LTKP29376 864 aa19.08■□□□□ 0.64
VPS39-206ENST00000562662 ST20-MTHFSA0A0A6YYL1 179 aa19.07■□□□□ 0.64
VPS39-206ENST00000562662 TMEM132EQ6IEE7 984 aa19.05■□□□□ 0.64
VPS39-206ENST00000562662 TXNDC2Q86VQ3 553 aa19.05■□□□□ 0.64
VPS39-206ENST00000562662 ADAMTS13Q76LX8 1427 aa19.05■□□□□ 0.64
VPS39-206ENST00000562662 EIF3AQ14152 1382 aaKnown RBP19.05■□□□□ 0.64
VPS39-206ENST00000562662 KNDC1Q76NI1 1749 aa19.04■□□□□ 0.64
VPS39-206ENST00000562662 SENP3Q9H4L4 574 aaPredicted RBP19.04■□□□□ 0.64
VPS39-206ENST00000562662 EID1Q9Y6B2 187 aa19.04■□□□□ 0.64
VPS39-206ENST00000562662 QRICH2Q9H0J4 1663 aa19.04■□□□□ 0.64
VPS39-206ENST00000562662 MED14O60244 1454 aa19.03■□□□□ 0.64
VPS39-206ENST00000562662 C11orf95C9JLR9 678 aaPredicted RBP19.03■□□□□ 0.64
VPS39-206ENST00000562662 WASHC2AQ641Q2 1341 aa19.02■□□□□ 0.64
VPS39-206ENST00000562662 DIP2AQ14689 1571 aa19.02■□□□□ 0.64
VPS39-206ENST00000562662 YTHDC2Q9H6S0 1430 aaKnown RBP19.02■□□□□ 0.64
VPS39-206ENST00000562662 TESK2Q96S53 571 aa19.02■□□□□ 0.64
VPS39-206ENST00000562662 CCDC7Q96M83 1385 aa19.02■□□□□ 0.64
VPS39-206ENST00000562662 DLC1Q96QB1 1528 aa19■□□□□ 0.63
VPS39-206ENST00000562662 KIF7Q2M1P5 1343 aa18.99■□□□□ 0.63
VPS39-206ENST00000562662 METP08581 1390 aa18.98■□□□□ 0.63
VPS39-206ENST00000562662 LRPPRCP42704 1394 aaKnown RBP18.98■□□□□ 0.63
VPS39-206ENST00000562662 DIEXFQ68CQ4 756 aaKnown RBP18.98■□□□□ 0.63
VPS39-206ENST00000562662 TRAK1Q9UPV9 953 aa18.98■□□□□ 0.63
VPS39-206ENST00000562662 SBNO2Q9Y2G9 1366 aa18.97■□□□□ 0.63
VPS39-206ENST00000562662 CPS1P31327 1500 aa18.96■□□□□ 0.63
VPS39-206ENST00000562662 ANKLE2Q86XL3 938 aa18.96■□□□□ 0.63
VPS39-206ENST00000562662 CENPJQ9HC77 1338 aaPredicted RBP18.96■□□□□ 0.63
VPS39-206ENST00000562662 DISP3Q9P2K9 1392 aa18.95■□□□□ 0.62
VPS39-206ENST00000562662 TECPR2O15040 1411 aa18.95■□□□□ 0.62
VPS39-206ENST00000562662 BCANQ96GW7 911 aa18.95■□□□□ 0.62
VPS39-206ENST00000562662 ABCC11Q96J66 1382 aa18.94■□□□□ 0.62
VPS39-206ENST00000562662 LMTK3Q96Q04 1460 aa18.94■□□□□ 0.62
VPS39-206ENST00000562662 DDX10Q13206 875 aaKnown RBP18.93■□□□□ 0.62
VPS39-206ENST00000562662 STK26Q9P289 416 aa18.93■□□□□ 0.62
VPS39-206ENST00000562662 TBX22Q9Y458 520 aa18.93■□□□□ 0.62
VPS39-206ENST00000562662 XRN1Q8IZH2 1706 aaKnown RBP18.93■□□□□ 0.62
VPS39-206ENST00000562662 CHD2O14647 1828 aaKnown RBP18.93■□□□□ 0.62
VPS39-206ENST00000562662 NPHP4O75161 1426 aaPredicted RBP18.91■□□□□ 0.62
VPS39-206ENST00000562662 PTPRUQ92729 1446 aa18.91■□□□□ 0.62
VPS39-206ENST00000562662 TMF1P82094 1093 aa18.91■□□□□ 0.62
VPS39-206ENST00000562662 SLC26A8Q96RN1 970 aa18.91■□□□□ 0.62
VPS39-206ENST00000562662 MYOM1P52179 1685 aa18.89■□□□□ 0.61
VPS39-206ENST00000562662 TULP4Q9NRJ4 1543 aa18.89■□□□□ 0.61
VPS39-206ENST00000562662 SLC24A1O60721 1099 aa18.88■□□□□ 0.61
VPS39-206ENST00000562662 PIK3R4Q99570 1358 aa18.88■□□□□ 0.61
VPS39-206ENST00000562662 FAM135BQ49AJ0 1406 aa18.88■□□□□ 0.61
VPS39-206ENST00000562662 STRCQ7RTU9 1775 aa18.87■□□□□ 0.61
VPS39-206ENST00000562662 SIRT1Q96EB6 747 aa18.87■□□□□ 0.61
VPS39-206ENST00000562662 PRAM1Q96QH2 718 aa18.87■□□□□ 0.61
VPS39-206ENST00000562662 NCKAP5LQ9HCH0 1330 aa18.87■□□□□ 0.61
VPS39-206ENST00000562662 PLEKHH1Q9ULM0 1364 aa18.86■□□□□ 0.61
VPS39-206ENST00000562662 PTCH1Q13635 1447 aa18.84■□□□□ 0.61
VPS39-206ENST00000562662 ROBO2Q9HCK4 1378 aa18.84■□□□□ 0.61
VPS39-206ENST00000562662 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.84■□□□□ 0.61
VPS39-206ENST00000562662 POLR3GLQ9BT43 218 aa18.84■□□□□ 0.61
VPS39-206ENST00000562662 POGKQ9P215 609 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms