RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SPATA31E1Q6ZUB1 1445 aa14.46□□□□□ -0.09
CLK3-208ENST00000562626 SETD1AO15047 1707 aaKnown RBP14.46□□□□□ -0.1
CLK3-208ENST00000562626 NCKAP5LQ9HCH0 1330 aa14.45□□□□□ -0.1
CLK3-208ENST00000562626 CCDC144AA2RUR9 1427 aa14.45□□□□□ -0.1
CLK3-208ENST00000562626 TMEM2Q9UHN6 1383 aa14.45□□□□□ -0.1
CLK3-208ENST00000562626 CHGAP10645 457 aaKnown RBP14.44□□□□□ -0.1
CLK3-208ENST00000562626 LTKP29376 864 aa14.44□□□□□ -0.1
CLK3-208ENST00000562626 SCAF11Q99590 1463 aaKnown RBP14.44□□□□□ -0.1
CLK3-208ENST00000562626 RIMS2Q9UQ26 1411 aa14.43□□□□□ -0.1
CLK3-208ENST00000562626 THEMISQ8N1K5 641 aaPredicted RBP14.42□□□□□ -0.1
CLK3-208ENST00000562626 MED14O60244 1454 aa14.42□□□□□ -0.1
CLK3-208ENST00000562626 NUTM2DQ5VT03 806 aaPredicted RBP14.41□□□□□ -0.1
CLK3-208ENST00000562626 STAG3Q9UJ98 1225 aa14.41□□□□□ -0.1
CLK3-208ENST00000562626 SENP3Q9H4L4 574 aaPredicted RBP14.4□□□□□ -0.1
CLK3-208ENST00000562626 CHD2O14647 1828 aaKnown RBP14.39□□□□□ -0.11
CLK3-208ENST00000562626 NPHP4O75161 1426 aaPredicted RBP14.39□□□□□ -0.11
CLK3-208ENST00000562626 XIRP1Q702N8 1843 aaKnown RBP14.38□□□□□ -0.11
CLK3-208ENST00000562626 SIN3AQ96ST3 1273 aa14.38□□□□□ -0.11
CLK3-208ENST00000562626 TXNDC2Q86VQ3 553 aa14.37□□□□□ -0.11
CLK3-208ENST00000562626 SETBP1Q9Y6X0 1596 aa14.37□□□□□ -0.11
CLK3-208ENST00000562626 RGL3Q3MIN7 710 aa14.36□□□□□ -0.11
CLK3-208ENST00000562626 ANKLE2Q86XL3 938 aa14.36□□□□□ -0.11
CLK3-208ENST00000562626 ZNF326Q5BKZ1 582 aaKnown RBP14.35□□□□□ -0.11
CLK3-208ENST00000562626 ADAMTS13Q76LX8 1427 aa14.34□□□□□ -0.11
CLK3-208ENST00000562626 PLEKHG1Q9ULL1 1385 aa14.34□□□□□ -0.11
CLK3-208ENST00000562626 LTBP4Q8N2S1 1624 aa14.33□□□□□ -0.11
CLK3-208ENST00000562626 ASXL1Q8IXJ9 1541 aa14.33□□□□□ -0.12
CLK3-208ENST00000562626 ALKQ9UM73 1620 aa14.32□□□□□ -0.12
CLK3-208ENST00000562626 XRN1Q8IZH2 1706 aaKnown RBP14.32□□□□□ -0.12
CLK3-208ENST00000562626 MYOM2P54296 1465 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 NRXN1Q9ULB1 1477 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 DIP2AQ14689 1571 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 NWD1Q149M9 1564 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 EID1Q9Y6B2 187 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 ADGRF5Q8IZF2 1346 aa14.31□□□□□ -0.12
CLK3-208ENST00000562626 SLC26A8Q96RN1 970 aa14.3□□□□□ -0.12
CLK3-208ENST00000562626 LAMC1P11047 1609 aa14.3□□□□□ -0.12
CLK3-208ENST00000562626 PPP1R15AO75807 674 aaPredicted RBP14.29□□□□□ -0.12
CLK3-208ENST00000562626 NEUROD1Q13562 356 aa14.29□□□□□ -0.12
CLK3-208ENST00000562626 RPGRIP1LQ68CZ1 1315 aa14.29□□□□□ -0.12
CLK3-208ENST00000562626 PIK3C2GO75747 1445 aa14.29□□□□□ -0.12
CLK3-208ENST00000562626 TRPM1Q7Z4N2 1603 aa14.28□□□□□ -0.12
CLK3-208ENST00000562626 ZNF335Q9H4Z2 1342 aaPredicted RBP14.28□□□□□ -0.12
CLK3-208ENST00000562626 KIAA1210Q9ULL0 1709 aa14.28□□□□□ -0.12
CLK3-208ENST00000562626 PTPRUQ92729 1446 aa14.27□□□□□ -0.12
CLK3-208ENST00000562626 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLK3-208ENST00000562626 KNDC1Q76NI1 1749 aa14.27□□□□□ -0.13
CLK3-208ENST00000562626 METP08581 1390 aa14.25□□□□□ -0.13
CLK3-208ENST00000562626 L3MBTL2Q969R5 705 aa14.25□□□□□ -0.13
CLK3-208ENST00000562626 DMRT2Q9Y5R5 561 aa14.25□□□□□ -0.13
CLK3-208ENST00000562626 DCAF11Q8TEB1 546 aa14.24□□□□□ -0.13
CLK3-208ENST00000562626 KDM2AQ9Y2K7 1162 aa14.24□□□□□ -0.13
CLK3-208ENST00000562626 ADGRB1O14514 1584 aa14.24□□□□□ -0.13
CLK3-208ENST00000562626 VGFO15240 615 aaPredicted RBP14.23□□□□□ -0.13
CLK3-208ENST00000562626 HDGFP51858 240 aaKnown RBP14.23□□□□□ -0.13
CLK3-208ENST00000562626 BCANQ96GW7 911 aa14.23□□□□□ -0.13
CLK3-208ENST00000562626 NALCNQ8IZF0 1738 aa14.23□□□□□ -0.13
CLK3-208ENST00000562626 ARHGEF28Q8N1W1 1705 aaKnown RBP14.23□□□□□ -0.13
CLK3-208ENST00000562626 CCER1Q8TC90 406 aaPredicted RBP14.22□□□□□ -0.13
CLK3-208ENST00000562626 PRAG1Q86YV5 1406 aa14.22□□□□□ -0.13
CLK3-208ENST00000562626 TBX22Q9Y458 520 aa14.21□□□□□ -0.13
CLK3-208ENST00000562626 LRRC7Q96NW7 1537 aa14.2□□□□□ -0.14
CLK3-208ENST00000562626 CFAP70Q5T0N1 1121 aa14.2□□□□□ -0.14
CLK3-208ENST00000562626 CPS1P31327 1500 aa14.2□□□□□ -0.14
CLK3-208ENST00000562626 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.18□□□□□ -0.14
CLK3-208ENST00000562626 NBPF8Q3BBV2 869 aa14.18□□□□□ -0.14
CLK3-208ENST00000562626 TMEM132EQ6IEE7 984 aa14.18□□□□□ -0.14
CLK3-208ENST00000562626 TONSLQ96HA7 1378 aa14.18□□□□□ -0.14
CLK3-208ENST00000562626 NKTRP30414 1462 aaKnown RBP14.18□□□□□ -0.14
CLK3-208ENST00000562626 CLSPNQ9HAW4 1339 aa14.17□□□□□ -0.14
CLK3-208ENST00000562626 RBM33Q96EV2 1170 aaKnown RBP14.17□□□□□ -0.14
CLK3-208ENST00000562626 C14orf93Q9H972 538 aaKnown RBP14.17□□□□□ -0.14
CLK3-208ENST00000562626 KCNA6P17658 529 aa14.16□□□□□ -0.14
CLK3-208ENST00000562626 PIK3R4Q99570 1358 aa14.16□□□□□ -0.14
CLK3-208ENST00000562626 RGPD8O14715 1765 aaPredicted RBP14.16□□□□□ -0.14
CLK3-208ENST00000562626 YTHDC2Q9H6S0 1430 aaKnown RBP14.15□□□□□ -0.14
CLK3-208ENST00000562626 ROBO2Q9HCK4 1378 aa14.14□□□□□ -0.15
CLK3-208ENST00000562626 NBPF1Q3BBV0 1214 aa14.14□□□□□ -0.15
CLK3-208ENST00000562626 AMOTL2Q9Y2J4 779 aa14.14□□□□□ -0.15
CLK3-208ENST00000562626 TECPR2O15040 1411 aa14.13□□□□□ -0.15
CLK3-208ENST00000562626 QRICH2Q9H0J4 1663 aa14.13□□□□□ -0.15
CLK3-208ENST00000562626 LRPPRCP42704 1394 aaKnown RBP14.12□□□□□ -0.15
CLK3-208ENST00000562626 PLEKHH1Q9ULM0 1364 aa14.12□□□□□ -0.15
CLK3-208ENST00000562626 TMEM94Q12767 1356 aa14.11□□□□□ -0.15
CLK3-208ENST00000562626 DLC1Q96QB1 1528 aa14.11□□□□□ -0.15
CLK3-208ENST00000562626 PTCH1Q13635 1447 aa14.11□□□□□ -0.15
CLK3-208ENST00000562626 STK26Q9P289 416 aa14.11□□□□□ -0.15
CLK3-208ENST00000562626 RALGAPBQ86X10 1494 aa14.11□□□□□ -0.15
CLK3-208ENST00000562626 STAC3Q96MF2 364 aa14.1□□□□□ -0.15
CLK3-208ENST00000562626 FMN2Q9NZ56 1722 aa14.1□□□□□ -0.15
CLK3-208ENST00000562626 PROSER2Q86WR7 435 aaPredicted RBP14.09□□□□□ -0.15
CLK3-208ENST00000562626 IQSEC2Q5JU85 1478 aa14.09□□□□□ -0.15
CLK3-208ENST00000562626 ABCC11Q96J66 1382 aa14.09□□□□□ -0.15
CLK3-208ENST00000562626 USP32Q8NFA0 1604 aa14.07□□□□□ -0.16
CLK3-208ENST00000562626 WAPLQ7Z5K2 1190 aa14.06□□□□□ -0.16
CLK3-208ENST00000562626 ADGRL3Q9HAR2 1447 aa14.06□□□□□ -0.16
CLK3-208ENST00000562626 ADGRB2O60241 1585 aa14.05□□□□□ -0.16
CLK3-208ENST00000562626 TRAK1Q9UPV9 953 aa14.05□□□□□ -0.16
CLK3-208ENST00000562626 GPRASP1Q5JY77 1395 aa14.05□□□□□ -0.16
CLK3-208ENST00000562626 FAM135BQ49AJ0 1406 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms