RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NRXN1Q9ULB1 1477 aa10.35□□□□□ -0.75
VPS39-204ENST00000561818 PIK3C2BO00750 1634 aa10.34□□□□□ -0.75
VPS39-204ENST00000561818 RAPGEF3O95398 923 aa10.34□□□□□ -0.75
VPS39-204ENST00000561818 GGT6Q6P531 493 aa10.34□□□□□ -0.75
VPS39-204ENST00000561818 KIF7Q2M1P5 1343 aa10.33□□□□□ -0.76
VPS39-204ENST00000561818 VGFO15240 615 aaPredicted RBP10.33□□□□□ -0.76
VPS39-204ENST00000561818 KDM2AQ9Y2K7 1162 aa10.33□□□□□ -0.76
VPS39-204ENST00000561818 COL17A1Q9UMD9 1497 aaPredicted RBP10.33□□□□□ -0.76
VPS39-204ENST00000561818 KIF13AQ9H1H9 1805 aa10.33□□□□□ -0.76
VPS39-204ENST00000561818 IFT172Q9UG01 1749 aa10.33□□□□□ -0.76
VPS39-204ENST00000561818 RGL3Q3MIN7 710 aa10.32□□□□□ -0.76
VPS39-204ENST00000561818 ESF1Q9H501 851 aaKnown RBP10.31□□□□□ -0.76
VPS39-204ENST00000561818 YEATS2Q9ULM3 1422 aa10.31□□□□□ -0.76
VPS39-204ENST00000561818 IQGAP1P46940 1657 aa10.31□□□□□ -0.76
VPS39-204ENST00000561818 HDGFP51858 240 aaKnown RBP10.3□□□□□ -0.76
VPS39-204ENST00000561818 UGGT1Q9NYU2 1555 aa10.3□□□□□ -0.76
VPS39-204ENST00000561818 KDM5AP29375 1690 aaKnown RBP10.29□□□□□ -0.76
VPS39-204ENST00000561818 ST20-MTHFSA0A0A6YYL1 179 aa10.29□□□□□ -0.76
VPS39-204ENST00000561818 RALBP1Q15311 655 aa10.29□□□□□ -0.76
VPS39-204ENST00000561818 PUS7Q96PZ0 661 aaKnown RBP10.29□□□□□ -0.76
VPS39-204ENST00000561818 PIK3C2GO75747 1445 aa10.29□□□□□ -0.76
VPS39-204ENST00000561818 SYNMO15061 1565 aa10.29□□□□□ -0.76
VPS39-204ENST00000561818 PREX1Q8TCU6 1659 aa10.28□□□□□ -0.76
VPS39-204ENST00000561818 DCAF8L1A6NGE4 600 aa10.28□□□□□ -0.76
VPS39-204ENST00000561818 PPLO60437 1756 aa10.28□□□□□ -0.76
VPS39-204ENST00000561818 MYO3AQ8NEV4 1616 aa10.28□□□□□ -0.76
VPS39-204ENST00000561818 ERVK-7P63135 1459 aa10.28□□□□□ -0.76
VPS39-204ENST00000561818 TSPOAP1O95153 1857 aa10.27□□□□□ -0.76
VPS39-204ENST00000561818 SPATA31D1Q6ZQQ2 1576 aa10.27□□□□□ -0.76
VPS39-204ENST00000561818 NCBP3Q53F19 620 aaKnown RBP10.27□□□□□ -0.77
VPS39-204ENST00000561818 PRKRIP1Q9H875 184 aaPredicted RBP10.27□□□□□ -0.77
VPS39-204ENST00000561818 MROH2AA6NES4 1674 aa10.27□□□□□ -0.77
VPS39-204ENST00000561818 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS39-204ENST00000561818 INSRP06213 1382 aa10.26□□□□□ -0.77
VPS39-204ENST00000561818 NINLQ9Y2I6 1382 aa10.26□□□□□ -0.77
VPS39-204ENST00000561818 HIRIP3Q9BW71 556 aaPredicted RBP10.25□□□□□ -0.77
VPS39-204ENST00000561818 NPC1L1Q9UHC9 1359 aa10.25□□□□□ -0.77
VPS39-204ENST00000561818 NEXMIFQ5QGS0 1516 aa10.23□□□□□ -0.77
VPS39-204ENST00000561818 TESK2Q96S53 571 aa10.23□□□□□ -0.77
VPS39-204ENST00000561818 C14orf93Q9H972 538 aaKnown RBP10.23□□□□□ -0.77
VPS39-204ENST00000561818 BRD4O60885 1362 aaPredicted RBP10.23□□□□□ -0.77
VPS39-204ENST00000561818 NLRP1Q9C000 1473 aa10.23□□□□□ -0.77
VPS39-204ENST00000561818 TMEM131LA2VDJ0 1609 aa10.22□□□□□ -0.77
VPS39-204ENST00000561818 CHGAP10645 457 aaKnown RBP10.21□□□□□ -0.77
VPS39-204ENST00000561818 PELP1Q8IZL8 1130 aaKnown RBP10.21□□□□□ -0.77
VPS39-204ENST00000561818 YTHDC1Q96MU7 727 aaKnown RBP10.21□□□□□ -0.77
VPS39-204ENST00000561818 STAG3Q9UJ98 1225 aa10.21□□□□□ -0.77
VPS39-204ENST00000561818 MYBBP1AQ9BQG0 1328 aaKnown RBP10.21□□□□□ -0.78
VPS39-204ENST00000561818 CLTCQ00610 1675 aaKnown RBP10.2□□□□□ -0.78
VPS39-204ENST00000561818 NBPF1Q3BBV0 1214 aa10.2□□□□□ -0.78
VPS39-204ENST00000561818 SIGLEC1Q9BZZ2 1709 aa10.2□□□□□ -0.78
VPS39-204ENST00000561818 CENPJQ9HC77 1338 aaPredicted RBP10.2□□□□□ -0.78
VPS39-204ENST00000561818 ADGRB1O14514 1584 aa10.19□□□□□ -0.78
VPS39-204ENST00000561818 C11orf95C9JLR9 678 aaPredicted RBP10.19□□□□□ -0.78
VPS39-204ENST00000561818 NPM3O75607 178 aaKnown RBP10.19□□□□□ -0.78
VPS39-204ENST00000561818 NLRP13Q86W25 1043 aa10.19□□□□□ -0.78
VPS39-204ENST00000561818 IDI1Q13907 227 aa10.18□□□□□ -0.78
VPS39-204ENST00000561818 MRS2Q9HD23 443 aa10.18□□□□□ -0.78
VPS39-204ENST00000561818 DLC1Q96QB1 1528 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 ZMYM3Q14202 1370 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 PARD3Q8TEW0 1356 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 EVC2Q86UK5 1308 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 ADGRF5Q8IZF2 1346 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 KNSTRNQ9Y448 316 aa10.17□□□□□ -0.78
VPS39-204ENST00000561818 NSD2O96028 1365 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 ATAD2Q6PL18 1390 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 TNRQ92752 1358 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 TMC1Q8TDI8 760 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 POLR3GLQ9BT43 218 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 A2ML1A8K2U0 1454 aa10.16□□□□□ -0.78
VPS39-204ENST00000561818 DISP3Q9P2K9 1392 aa10.15□□□□□ -0.78
VPS39-204ENST00000561818 ZBED9Q6R2W3 1325 aa10.15□□□□□ -0.78
VPS39-204ENST00000561818 CFAP70Q5T0N1 1121 aa10.15□□□□□ -0.78
VPS39-204ENST00000561818 NGEFQ8N5V2 710 aa10.15□□□□□ -0.78
VPS39-204ENST00000561818 ASXL1Q8IXJ9 1541 aa10.15□□□□□ -0.78
VPS39-204ENST00000561818 NEFLP07196 543 aa10.14□□□□□ -0.79
VPS39-204ENST00000561818 SIRT1Q96EB6 747 aa10.14□□□□□ -0.79
VPS39-204ENST00000561818 QRICH2Q9H0J4 1663 aa10.14□□□□□ -0.79
VPS39-204ENST00000561818 USP32Q8NFA0 1604 aa10.13□□□□□ -0.79
VPS39-204ENST00000561818 RIMS2Q9UQ26 1411 aa10.13□□□□□ -0.79
VPS39-204ENST00000561818 PER1O15534 1290 aaPredicted RBP10.12□□□□□ -0.79
VPS39-204ENST00000561818 ERICH6BQ5W0A0 696 aa10.12□□□□□ -0.79
VPS39-204ENST00000561818 DIP2AQ14689 1571 aa10.12□□□□□ -0.79
VPS39-204ENST00000561818 ARHGEF28Q8N1W1 1705 aaKnown RBP10.12□□□□□ -0.79
VPS39-204ENST00000561818 FAM135BQ49AJ0 1406 aa10.11□□□□□ -0.79
VPS39-204ENST00000561818 YTHDC2Q9H6S0 1430 aaKnown RBP10.11□□□□□ -0.79
VPS39-204ENST00000561818 HNRNPUQ00839 825 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS39-204ENST00000561818 PANK3Q9H999 370 aa10.11□□□□□ -0.79
VPS39-204ENST00000561818 LRPPRCP42704 1394 aaKnown RBP10.11□□□□□ -0.79
VPS39-204ENST00000561818 CFAP65Q6ZU64 1925 aaKnown RBP10.11□□□□□ -0.79
VPS39-204ENST00000561818 ABCC11Q96J66 1382 aa10.11□□□□□ -0.79
VPS39-204ENST00000561818 ALKQ9UM73 1620 aa10.11□□□□□ -0.79
VPS39-204ENST00000561818 TECPR2O15040 1411 aa10.1□□□□□ -0.79
VPS39-204ENST00000561818 EID1Q9Y6B2 187 aa10.1□□□□□ -0.79
VPS39-204ENST00000561818 TMEM2Q9UHN6 1383 aa10.1□□□□□ -0.79
VPS39-204ENST00000561818 KNDC1Q76NI1 1749 aa10.1□□□□□ -0.79
VPS39-204ENST00000561818 CGNL1Q0VF96 1302 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 MYOM1P52179 1685 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 KCNA4P22459 653 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 PDE3BQ13370 1112 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms