RNA–Protein interactions for RNA: ENST00000561637.5

NME3-202, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 1,014 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-202ENST00000561637 ROCK1Q13464 1354 aa38.79■■■■□ 3.8
NME3-202ENST00000561637 NOS1P29475 1434 aa38.76■■■■□ 3.8
NME3-202ENST00000561637 UNC13BO14795 1591 aa38.74■■■■□ 3.79
NME3-202ENST00000561637 NWD1Q149M9 1564 aa38.74■■■■□ 3.79
NME3-202ENST00000561637 ADGRB3O60242 1522 aa38.71■■■■□ 3.79
NME3-202ENST00000561637 SETD1AO15047 1707 aaKnown RBP38.69■■■■□ 3.78
NME3-202ENST00000561637 NKTRP30414 1462 aaKnown RBP38.68■■■■□ 3.78
NME3-202ENST00000561637 PHLPP1O60346 1717 aa38.67■■■■□ 3.78
NME3-202ENST00000561637 MYO5BQ9ULV0 1848 aa38.67■■■■□ 3.78
NME3-202ENST00000561637 RRBP1Q9P2E9 1410 aaKnown RBP38.64■■■■□ 3.78
NME3-202ENST00000561637 CHD2O14647 1828 aaKnown RBP38.63■■■■□ 3.77
NME3-202ENST00000561637 RPRD2Q5VT52 1461 aaKnown RBP38.61■■■■□ 3.77
NME3-202ENST00000561637 MSH6P52701 1360 aa38.61■■■■□ 3.77
NME3-202ENST00000561637 GCC2Q8IWJ2 1684 aa38.61■■■■□ 3.77
NME3-202ENST00000561637 BCANQ96GW7 911 aa38.6■■■■□ 3.77
NME3-202ENST00000561637 SLAIN2Q9P270 581 aa38.6■■■■□ 3.77
NME3-202ENST00000561637 IQGAP3Q86VI3 1631 aa38.58■■■■□ 3.77
NME3-202ENST00000561637 E9PCH4 1651 aa38.58■■■■□ 3.77
NME3-202ENST00000561637 SLC52A1Q9NWF4 448 aa38.57■■■■□ 3.76
NME3-202ENST00000561637 NUP155O75694 1391 aa38.55■■■■□ 3.76
NME3-202ENST00000561637 ZFYVE9O95405 1425 aa38.55■■■■□ 3.76
NME3-202ENST00000561637 JCADQ9P266 1359 aa38.53■■■■□ 3.76
NME3-202ENST00000561637 COL16A1Q07092 1604 aaPredicted RBP38.52■■■■□ 3.76
NME3-202ENST00000561637 PLEKHG1Q9ULL1 1385 aa38.49■■■■□ 3.75
NME3-202ENST00000561637 TMEM131LA2VDJ0 1609 aa38.47■■■■□ 3.75
NME3-202ENST00000561637 RIMS2Q9UQ26 1411 aa38.46■■■■□ 3.75
NME3-202ENST00000561637 LRP6O75581 1613 aa38.43■■■■□ 3.74
NME3-202ENST00000561637 NAIPQ13075 1403 aa38.42■■■■□ 3.74
NME3-202ENST00000561637 PPP1R15AO75807 674 aaPredicted RBP38.4■■■■□ 3.74
NME3-202ENST00000561637 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.38■■■■□ 3.74
NME3-202ENST00000561637 CHGAP10645 457 aaKnown RBP38.38■■■■□ 3.73
NME3-202ENST00000561637 TBX22Q9Y458 520 aa38.37■■■■□ 3.73
NME3-202ENST00000561637 NCOA3Q9Y6Q9 1424 aa38.34■■■■□ 3.73
NME3-202ENST00000561637 ADAMTS13Q76LX8 1427 aa38.33■■■■□ 3.73
NME3-202ENST00000561637 HDGFP51858 240 aaKnown RBP38.33■■■■□ 3.73
NME3-202ENST00000561637 NUTM2DQ5VT03 806 aaPredicted RBP38.33■■■■□ 3.73
NME3-202ENST00000561637 C14orf37Q86TY3 774 aa38.32■■■■□ 3.72
NME3-202ENST00000561637 SHPRHQ149N8 1683 aa38.31■■■■□ 3.72
NME3-202ENST00000561637 SPATA31A6Q5VVP1 1343 aa38.31■■■■□ 3.72
NME3-202ENST00000561637 AHDC1Q5TGY3 1603 aaPredicted RBP38.3■■■■□ 3.72
NME3-202ENST00000561637 MEX3CQ5U5Q3 659 aaKnown RBP38.28■■■■□ 3.72
NME3-202ENST00000561637 UPF1Q92900 1129 aaKnown RBP eCLIP38.26■■■■□ 3.72
NME3-202ENST00000561637 TRIM52Q96A61 297 aa38.26■■■■□ 3.72
NME3-202ENST00000561637 HFM1A2PYH4 1435 aa38.25■■■■□ 3.71
NME3-202ENST00000561637 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.25■■■■□ 3.71
NME3-202ENST00000561637 C19orf44Q9H6X5 657 aa38.25■■■■□ 3.71
NME3-202ENST00000561637 SPHKAPQ2M3C7 1700 aa38.24■■■■□ 3.71
NME3-202ENST00000561637 CADPS2Q86UW7 1296 aa38.24■■■■□ 3.71
NME3-202ENST00000561637 DIP2AQ14689 1571 aa38.23■■■■□ 3.71
NME3-202ENST00000561637 ZNF772Q68DY9 489 aaPredicted RBP38.23■■■■□ 3.71
NME3-202ENST00000561637 ATF3P18847 181 aa38.21■■■■□ 3.71
NME3-202ENST00000561637 PIK3R4Q99570 1358 aa38.19■■■■□ 3.7
NME3-202ENST00000561637 PTPRUQ92729 1446 aa38.18■■■■□ 3.7
NME3-202ENST00000561637 BRINP3Q76B58 766 aa38.16■■■■□ 3.7
NME3-202ENST00000561637 TRPM2O94759 1503 aa38.14■■■■□ 3.7
NME3-202ENST00000561637 CLTCL1P53675 1640 aa38.14■■■■□ 3.7
NME3-202ENST00000561637 AMOTL2Q9Y2J4 779 aa38.14■■■■□ 3.7
NME3-202ENST00000561637 NUTM2BA6NNL0 878 aaPredicted RBP38.11■■■■□ 3.69
NME3-202ENST00000561637 NUTM2EB1AL46 878 aaPredicted RBP38.11■■■■□ 3.69
NME3-202ENST00000561637 NUTM2AQ8IVF1 878 aaPredicted RBP38.11■■■■□ 3.69
NME3-202ENST00000561637 RXRBP28702 533 aa38.09■■■■□ 3.69
NME3-202ENST00000561637 NRXN3Q9Y4C0 1643 aa38.06■■■■□ 3.68
NME3-202ENST00000561637 XRN1Q8IZH2 1706 aaKnown RBP38.05■■■■□ 3.68
NME3-202ENST00000561637 ASXL1Q8IXJ9 1541 aa38.05■■■■□ 3.68
NME3-202ENST00000561637 NHSL1Q5SYE7 1610 aa38.04■■■■□ 3.68
NME3-202ENST00000561637 AFF2P51816 1311 aa38.02■■■■□ 3.68
NME3-202ENST00000561637 ZNF326Q5BKZ1 582 aaKnown RBP38.01■■■■□ 3.68
NME3-202ENST00000561637 DCCP43146 1447 aa38.01■■■■□ 3.68
NME3-202ENST00000561637 CDK12Q9NYV4 1490 aaPredicted RBP38.01■■■■□ 3.67
NME3-202ENST00000561637 SLC4A1APQ9BWU0 796 aaKnown RBP38■■■■□ 3.67
NME3-202ENST00000561637 MST1RQ04912 1400 aa37.99■■■■□ 3.67
NME3-202ENST00000561637 SETD5Q9C0A6 1442 aa37.99■■■■□ 3.67
NME3-202ENST00000561637 FOXD1Q16676 465 aa37.98■■■■□ 3.67
NME3-202ENST00000561637 SETBP1Q9Y6X0 1596 aa37.96■■■■□ 3.67
NME3-202ENST00000561637 NEXMIFQ5QGS0 1516 aa37.96■■■■□ 3.67
NME3-202ENST00000561637 DDX17Q92841 729 aaKnown RBP37.93■■■■□ 3.66
NME3-202ENST00000561637 KIF1BO60333 1816 aa37.91■■■■□ 3.66
NME3-202ENST00000561637 METP08581 1390 aa37.91■■■■□ 3.66
NME3-202ENST00000561637 LRRC59Q96AG4 307 aaKnown RBP37.89■■■■□ 3.66
NME3-202ENST00000561637 RGS12O14924 1447 aa37.87■■■■□ 3.65
NME3-202ENST00000561637 NALCNQ8IZF0 1738 aa37.87■■■■□ 3.65
NME3-202ENST00000561637 C8orf37Q96NL8 207 aa37.86■■■■□ 3.65
NME3-202ENST00000561637 PNPLA6Q8IY17 1366 aa37.85■■■■□ 3.65
NME3-202ENST00000561637 QTRT2Q9H974 415 aaKnown RBP37.84■■■■□ 3.65
NME3-202ENST00000561637 ADGRL3Q9HAR2 1447 aa37.83■■■■□ 3.65
NME3-202ENST00000561637 RBM6P78332 1123 aaKnown RBP37.8■■■■□ 3.64
NME3-202ENST00000561637 MPHOSPH9Q99550 1183 aa37.79■■■■□ 3.64
NME3-202ENST00000561637 ADAMTS2O95450 1211 aa37.72■■■■□ 3.63
NME3-202ENST00000561637 C1orf167Q5SNV9 1468 aa37.71■■■■□ 3.63
NME3-202ENST00000561637 LAMC1P11047 1609 aa37.7■■■■□ 3.63
NME3-202ENST00000561637 NGLY1Q96IV0 654 aa37.7■■■■□ 3.63
NME3-202ENST00000561637 SRCAPQ6ZRS2 3230 aa37.7■■■■□ 3.63
NME3-202ENST00000561637 PPLO60437 1756 aa37.69■■■■□ 3.62
NME3-202ENST00000561637 CCDC144AA2RUR9 1427 aa37.67■■■■□ 3.62
NME3-202ENST00000561637 RAB3GAP2Q9H2M9 1393 aa37.67■■■■□ 3.62
NME3-202ENST00000561637 VGFO15240 615 aaPredicted RBP37.64■■■■□ 3.62
NME3-202ENST00000561637 RPGRIP1LQ68CZ1 1315 aa37.63■■■■□ 3.62
NME3-202ENST00000561637 SPATA31E1Q6ZUB1 1445 aa37.63■■■■□ 3.61
NME3-202ENST00000561637 ORAI2Q96SN7 254 aa37.63■■■■□ 3.61
NME3-202ENST00000561637 RGL3Q3MIN7 710 aa37.62■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms