RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 NBPF26B4DH59 902 aa6.49□□□□□ -1.37
SPG11-225ENST00000561391 CAMK2BQ13554 666 aa6.49□□□□□ -1.37
SPG11-225ENST00000561391 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.49□□□□□ -1.37
SPG11-225ENST00000561391 GGCXP38435 758 aa6.48□□□□□ -1.37
SPG11-225ENST00000561391 HDGFP51858 240 aaKnown RBP6.48□□□□□ -1.37
SPG11-225ENST00000561391 CDCA7LQ96GN5 454 aa6.48□□□□□ -1.37
SPG11-225ENST00000561391 HMGXB3Q12766 1538 aa6.47□□□□□ -1.37
SPG11-225ENST00000561391 FBXO41Q8TF61 875 aa6.47□□□□□ -1.37
SPG11-225ENST00000561391 PNMA3Q9UL41 463 aa6.47□□□□□ -1.37
SPG11-225ENST00000561391 BAZ1BQ9UIG0 1483 aaKnown RBP6.47□□□□□ -1.37
SPG11-225ENST00000561391 CADPSQ9ULU8 1353 aa6.46□□□□□ -1.37
SPG11-225ENST00000561391 SOCS7O14512 581 aa6.46□□□□□ -1.38
SPG11-225ENST00000561391 PRSS12P56730 875 aa6.46□□□□□ -1.38
SPG11-225ENST00000561391 ZNF516Q92618 1163 aa6.46□□□□□ -1.38
SPG11-225ENST00000561391 LMTK3Q96Q04 1460 aa6.46□□□□□ -1.38
SPG11-225ENST00000561391 ILDR2Q71H61 639 aa6.45□□□□□ -1.38
SPG11-225ENST00000561391 CERKQ8TCT0 537 aa6.45□□□□□ -1.38
SPG11-225ENST00000561391 NECTIN2Q92692 538 aa6.45□□□□□ -1.38
SPG11-225ENST00000561391 TATDN2Q93075 761 aa6.45□□□□□ -1.38
SPG11-225ENST00000561391 STK17AQ9UEE5 414 aa6.45□□□□□ -1.38
SPG11-225ENST00000561391 PDIA6Q15084 440 aa6.44□□□□□ -1.38
SPG11-225ENST00000561391 TREML4Q6UXN2 200 aa6.44□□□□□ -1.38
SPG11-225ENST00000561391 APLP1P51693 650 aa6.43□□□□□ -1.38
SPG11-225ENST00000561391 COPS2P61201 443 aa6.43□□□□□ -1.38
SPG11-225ENST00000561391 NKX2-3Q8TAU0 364 aa6.42□□□□□ -1.38
SPG11-225ENST00000561391 FAM198AQ9UFP1 575 aa6.42□□□□□ -1.38
SPG11-225ENST00000561391 CEP164Q9UPV0 1460 aa6.41□□□□□ -1.38
SPG11-225ENST00000561391 GRXCR2A6NFK2 248 aa6.41□□□□□ -1.38
SPG11-225ENST00000561391 SPDYE16A6NNV3 312 aaPredicted RBP6.41□□□□□ -1.38
SPG11-225ENST00000561391 SLC4A3P48751 1232 aa6.41□□□□□ -1.38
SPG11-225ENST00000561391 PKDCCQ504Y2 493 aa6.41□□□□□ -1.38
SPG11-225ENST00000561391 NUDT18Q6ZVK8 323 aa6.41□□□□□ -1.38
SPG11-225ENST00000561391 C3orf80F5H4A9 247 aa6.4□□□□□ -1.38
SPG11-225ENST00000561391 ZNF608Q9ULD9 1512 aaPredicted RBP6.4□□□□□ -1.39
SPG11-225ENST00000561391 SLF2Q8IX21 1173 aa6.39□□□□□ -1.39
SPG11-225ENST00000561391 WDR70Q9NW82 654 aa6.39□□□□□ -1.39
SPG11-225ENST00000561391 SWT1Q5T5J6 900 aaKnown RBP6.38□□□□□ -1.39
SPG11-225ENST00000561391 LCE2AQ5TA79 106 aaPredicted RBP6.38□□□□□ -1.39
SPG11-225ENST00000561391 TMUB1Q9BVT8 246 aa6.38□□□□□ -1.39
SPG11-225ENST00000561391 SMARCA4P51532 1647 aa6.37□□□□□ -1.39
SPG11-225ENST00000561391 FANCD2Q9BXW9 1451 aa6.37□□□□□ -1.39
SPG11-225ENST00000561391 RSF1Q96T23 1441 aaPredicted RBP6.37□□□□□ -1.39
SPG11-225ENST00000561391 POTECB2RU33 542 aa6.37□□□□□ -1.39
SPG11-225ENST00000561391 BCANQ96GW7 911 aa6.37□□□□□ -1.39
SPG11-225ENST00000561391 CDHR5Q9HBB8 845 aa6.37□□□□□ -1.39
SPG11-225ENST00000561391 RBM27Q9P2N5 1060 aaKnown RBP6.37□□□□□ -1.39
SPG11-225ENST00000561391 ZPR1O75312 459 aa6.36□□□□□ -1.39
SPG11-225ENST00000561391 PRR14Q9BWN1 585 aa6.36□□□□□ -1.39
SPG11-225ENST00000561391 PCDHB3Q9Y5E6 796 aa6.36□□□□□ -1.39
SPG11-225ENST00000561391 DISP3Q9P2K9 1392 aa6.35□□□□□ -1.39
SPG11-225ENST00000561391 SLC19A1P41440 591 aa6.35□□□□□ -1.39
SPG11-225ENST00000561391 PRIM1P49642 420 aaKnown RBP6.35□□□□□ -1.39
SPG11-225ENST00000561391 URB2Q14146 1524 aaKnown RBP6.35□□□□□ -1.39
SPG11-225ENST00000561391 FAM187AA6NFU0 413 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 RNF223E7ERA6 249 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 DGAT1O75907 488 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 INSM1Q01101 510 aaPredicted RBP6.33□□□□□ -1.4
SPG11-225ENST00000561391 MYT1Q01538 1121 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 PADI6Q6TGC4 694 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 CHD1O14646 1710 aa6.33□□□□□ -1.4
SPG11-225ENST00000561391 ERCC6L2Q5T890 1561 aa6.32□□□□□ -1.4
SPG11-225ENST00000561391 E2F4Q16254 413 aa6.32□□□□□ -1.4
SPG11-225ENST00000561391 TRIM67Q6ZTA4 783 aa6.32□□□□□ -1.4
SPG11-225ENST00000561391 TLL1O43897 1013 aa6.31□□□□□ -1.4
SPG11-225ENST00000561391 ZNF697Q5TEC3 545 aa6.31□□□□□ -1.4
SPG11-225ENST00000561391 SPRYD7Q5W111 196 aa6.31□□□□□ -1.4
SPG11-225ENST00000561391 BLOC1S3Q6QNY0 202 aa6.31□□□□□ -1.4
SPG11-225ENST00000561391 ZNF598Q86UK7 904 aaKnown RBP6.31□□□□□ -1.4
SPG11-225ENST00000561391 HECW2Q9P2P5 1572 aa6.31□□□□□ -1.4
SPG11-225ENST00000561391 AQRO60306 1485 aaKnown RBP eCLIP6.3□□□□□ -1.4
SPG11-225ENST00000561391 IFT140Q96RY7 1462 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 TNFRSF10AO00220 468 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 WFS1O76024 890 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 OSBPP22059 807 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 PRR20EP86478 221 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 PRR20CP86479 221 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 PRR20DP86480 221 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 PRR20BP86481 221 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 PRR20AP86496 221 aa6.3□□□□□ -1.4
SPG11-225ENST00000561391 S1PR4O95977 384 aa6.29□□□□□ -1.4
SPG11-225ENST00000561391 FAM69CQ0P6D2 419 aa6.29□□□□□ -1.4
SPG11-225ENST00000561391 SUZ12Q15022 739 aaKnown RBP6.29□□□□□ -1.4
SPG11-225ENST00000561391 ANKLE1Q8NAG6 615 aa6.29□□□□□ -1.4
SPG11-225ENST00000561391 SYNJ2O15056 1496 aa6.28□□□□□ -1.4
SPG11-225ENST00000561391 PPEF1O14829 653 aaPredicted RBP6.28□□□□□ -1.4
SPG11-225ENST00000561391 KMT5BQ4FZB7 885 aa6.28□□□□□ -1.4
SPG11-225ENST00000561391 P3H3Q8IVL6 736 aa6.28□□□□□ -1.4
SPG11-225ENST00000561391 CHMP7Q8WUX9 453 aaPredicted RBP6.28□□□□□ -1.4
SPG11-225ENST00000561391 GAPVD1Q14C86 1478 aa6.28□□□□□ -1.4
SPG11-225ENST00000561391 TTC13Q8NBP0 860 aa6.27□□□□□ -1.41
SPG11-225ENST00000561391 KCNV2Q8TDN2 545 aa6.27□□□□□ -1.41
SPG11-225ENST00000561391 EMID1Q96A84 441 aaPredicted RBP6.27□□□□□ -1.41
SPG11-225ENST00000561391 ST8SIA5O15466 376 aa6.26□□□□□ -1.41
SPG11-225ENST00000561391 ARIH1Q9Y4X5 557 aaPredicted RBP6.26□□□□□ -1.41
SPG11-225ENST00000561391 PEG3Q9GZU2 1588 aa6.26□□□□□ -1.41
SPG11-225ENST00000561391 DNAJB2P25686 324 aa6.25□□□□□ -1.41
SPG11-225ENST00000561391 LIAT1Q6ZQX7 453 aa6.25□□□□□ -1.41
SPG11-225ENST00000561391 EYA1Q99502 592 aa6.25□□□□□ -1.41
SPG11-225ENST00000561391 EIF4G3O43432 1585 aaKnown RBP6.25□□□□□ -1.41
SPG11-225ENST00000561391 WIPF1O43516 503 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms