RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 E9PCH4 1651 aa24.73■■□□□ 1.55
SNX1-213ENST00000561026 TMEM131LA2VDJ0 1609 aa24.72■■□□□ 1.55
SNX1-213ENST00000561026 RIMS2Q9UQ26 1411 aa24.72■■□□□ 1.55
SNX1-213ENST00000561026 CHGAP10645 457 aaKnown RBP24.71■■□□□ 1.55
SNX1-213ENST00000561026 TMEM94Q12767 1356 aa24.71■■□□□ 1.55
SNX1-213ENST00000561026 PLEKHG1Q9ULL1 1385 aa24.7■■□□□ 1.55
SNX1-213ENST00000561026 SOCS7O14512 581 aa24.7■■□□□ 1.55
SNX1-213ENST00000561026 PPP1R15AO75807 674 aaPredicted RBP24.7■■□□□ 1.55
SNX1-213ENST00000561026 XIRP1Q702N8 1843 aaKnown RBP24.7■■□□□ 1.54
SNX1-213ENST00000561026 PROSER2Q86WR7 435 aaPredicted RBP24.69■■□□□ 1.54
SNX1-213ENST00000561026 SENP3Q9H4L4 574 aaPredicted RBP24.69■■□□□ 1.54
SNX1-213ENST00000561026 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.68■■□□□ 1.54
SNX1-213ENST00000561026 RRBP1Q9P2E9 1410 aaKnown RBP24.68■■□□□ 1.54
SNX1-213ENST00000561026 MYO5BQ9ULV0 1848 aa24.68■■□□□ 1.54
SNX1-213ENST00000561026 RBM33Q96EV2 1170 aaKnown RBP24.66■■□□□ 1.54
SNX1-213ENST00000561026 TBX22Q9Y458 520 aa24.65■■□□□ 1.54
SNX1-213ENST00000561026 NKTRP30414 1462 aaKnown RBP24.64■■□□□ 1.53
SNX1-213ENST00000561026 NWD1Q149M9 1564 aa24.64■■□□□ 1.53
SNX1-213ENST00000561026 MED1Q15648 1581 aaPredicted RBP24.64■■□□□ 1.53
SNX1-213ENST00000561026 NUTM2DQ5VT03 806 aaPredicted RBP24.63■■□□□ 1.53
SNX1-213ENST00000561026 FAM135BQ49AJ0 1406 aa24.62■■□□□ 1.53
SNX1-213ENST00000561026 NAIPQ13075 1403 aa24.57■■□□□ 1.52
SNX1-213ENST00000561026 ADAMTS13Q76LX8 1427 aa24.57■■□□□ 1.52
SNX1-213ENST00000561026 MSH6P52701 1360 aa24.57■■□□□ 1.52
SNX1-213ENST00000561026 CHD2O14647 1828 aaKnown RBP24.56■■□□□ 1.52
SNX1-213ENST00000561026 PIK3R4Q99570 1358 aa24.53■■□□□ 1.52
SNX1-213ENST00000561026 PHF23Q9BUL5 403 aaPredicted RBP24.52■■□□□ 1.52
SNX1-213ENST00000561026 SLAIN2Q9P270 581 aa24.52■■□□□ 1.52
SNX1-213ENST00000561026 DIP2AQ14689 1571 aa24.52■■□□□ 1.52
SNX1-213ENST00000561026 SPHKAPQ2M3C7 1700 aa24.52■■□□□ 1.52
SNX1-213ENST00000561026 NCOA3Q9Y6Q9 1424 aa24.51■■□□□ 1.51
SNX1-213ENST00000561026 HFM1A2PYH4 1435 aa24.49■■□□□ 1.51
SNX1-213ENST00000561026 ZNF326Q5BKZ1 582 aaKnown RBP24.49■■□□□ 1.51
SNX1-213ENST00000561026 ROBO1Q9Y6N7 1651 aa24.48■■□□□ 1.51
SNX1-213ENST00000561026 AMOTL2Q9Y2J4 779 aa24.47■■□□□ 1.51
SNX1-213ENST00000561026 C14orf37Q86TY3 774 aa24.46■■□□□ 1.51
SNX1-213ENST00000561026 TRIM52Q96A61 297 aa24.46■■□□□ 1.51
SNX1-213ENST00000561026 TRPM2O94759 1503 aa24.45■■□□□ 1.5
SNX1-213ENST00000561026 C19orf44Q9H6X5 657 aa24.44■■□□□ 1.5
SNX1-213ENST00000561026 PTPRUQ92729 1446 aa24.43■■□□□ 1.5
SNX1-213ENST00000561026 CLTCL1P53675 1640 aa24.42■■□□□ 1.5
SNX1-213ENST00000561026 SETBP1Q9Y6X0 1596 aa24.42■■□□□ 1.5
SNX1-213ENST00000561026 CADPS2Q86UW7 1296 aa24.41■■□□□ 1.5
SNX1-213ENST00000561026 SLC4A1APQ9BWU0 796 aaKnown RBP24.41■■□□□ 1.5
SNX1-213ENST00000561026 NRXN3Q9Y4C0 1643 aa24.4■■□□□ 1.5
SNX1-213ENST00000561026 ATF3P18847 181 aa24.39■■□□□ 1.49
SNX1-213ENST00000561026 RGS17Q9UGC6 210 aaPredicted RBP24.38■■□□□ 1.49
SNX1-213ENST00000561026 METP08581 1390 aa24.38■■□□□ 1.49
SNX1-213ENST00000561026 NEXMIFQ5QGS0 1516 aa24.37■■□□□ 1.49
SNX1-213ENST00000561026 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.35■■□□□ 1.49
SNX1-213ENST00000561026 KIF1BO60333 1816 aa24.33■■□□□ 1.48
SNX1-213ENST00000561026 PHLPP1O60346 1717 aa24.32■■□□□ 1.48
SNX1-213ENST00000561026 XRN1Q8IZH2 1706 aaKnown RBP24.32■■□□□ 1.48
SNX1-213ENST00000561026 VGFO15240 615 aaPredicted RBP24.32■■□□□ 1.48
SNX1-213ENST00000561026 JCADQ9P266 1359 aa24.32■■□□□ 1.48
SNX1-213ENST00000561026 RPGRIP1LQ68CZ1 1315 aa24.31■■□□□ 1.48
SNX1-213ENST00000561026 DCCP43146 1447 aa24.3■■□□□ 1.48
SNX1-213ENST00000561026 FOXD1Q16676 465 aa24.28■■□□□ 1.48
SNX1-213ENST00000561026 BRINP3Q76B58 766 aa24.27■■□□□ 1.48
SNX1-213ENST00000561026 COL16A1Q07092 1604 aaPredicted RBP24.26■■□□□ 1.47
SNX1-213ENST00000561026 AHDC1Q5TGY3 1603 aaPredicted RBP24.24■■□□□ 1.47
SNX1-213ENST00000561026 MPHOSPH9Q99550 1183 aa24.24■■□□□ 1.47
SNX1-213ENST00000561026 POTEAQ6S8J7 498 aa24.22■■□□□ 1.47
SNX1-213ENST00000561026 MST1RQ04912 1400 aa24.22■■□□□ 1.47
SNX1-213ENST00000561026 ADGRL3Q9HAR2 1447 aa24.22■■□□□ 1.47
SNX1-213ENST00000561026 SPATA31A6Q5VVP1 1343 aa24.21■■□□□ 1.47
SNX1-213ENST00000561026 CCDC144AA2RUR9 1427 aa24.19■■□□□ 1.46
SNX1-213ENST00000561026 ROBO2Q9HCK4 1378 aa24.18■■□□□ 1.46
SNX1-213ENST00000561026 PTCH1Q13635 1447 aa24.18■■□□□ 1.46
SNX1-213ENST00000561026 ASXL1Q8IXJ9 1541 aa24.17■■□□□ 1.46
SNX1-213ENST00000561026 SETD1AO15047 1707 aaKnown RBP24.17■■□□□ 1.46
SNX1-213ENST00000561026 PPLO60437 1756 aa24.17■■□□□ 1.46
SNX1-213ENST00000561026 RGL3Q3MIN7 710 aa24.16■■□□□ 1.46
SNX1-213ENST00000561026 ACIN1Q9UKV3 1341 aaKnown RBP24.15■■□□□ 1.46
SNX1-213ENST00000561026 PRAG1Q86YV5 1406 aa24.15■■□□□ 1.46
SNX1-213ENST00000561026 SPATA31E1Q6ZUB1 1445 aa24.14■■□□□ 1.46
SNX1-213ENST00000561026 LRP6O75581 1613 aa24.14■■□□□ 1.45
SNX1-213ENST00000561026 ADGRF5Q8IZF2 1346 aa24.14■■□□□ 1.45
SNX1-213ENST00000561026 NALCNQ8IZF0 1738 aa24.13■■□□□ 1.45
SNX1-213ENST00000561026 SHPRHQ149N8 1683 aa24.12■■□□□ 1.45
SNX1-213ENST00000561026 SETD5Q9C0A6 1442 aa24.12■■□□□ 1.45
SNX1-213ENST00000561026 ANKRD30BQ9BXX2 1392 aa24.11■■□□□ 1.45
SNX1-213ENST00000561026 MEX3CQ5U5Q3 659 aaKnown RBP24.11■■□□□ 1.45
SNX1-213ENST00000561026 LRRC59Q96AG4 307 aaKnown RBP24.1■■□□□ 1.45
SNX1-213ENST00000561026 C1orf167Q5SNV9 1468 aa24.09■■□□□ 1.45
SNX1-213ENST00000561026 DDX17Q92841 729 aaKnown RBP24.09■■□□□ 1.45
SNX1-213ENST00000561026 NHSL1Q5SYE7 1610 aa24.08■■□□□ 1.45
SNX1-213ENST00000561026 NUTM2BA6NNL0 878 aaPredicted RBP24.06■■□□□ 1.44
SNX1-213ENST00000561026 NUTM2EB1AL46 878 aaPredicted RBP24.06■■□□□ 1.44
SNX1-213ENST00000561026 NUTM2AQ8IVF1 878 aaPredicted RBP24.06■■□□□ 1.44
SNX1-213ENST00000561026 ZNF772Q68DY9 489 aaPredicted RBP24.05■■□□□ 1.44
SNX1-213ENST00000561026 ORAI2Q96SN7 254 aa24.04■■□□□ 1.44
SNX1-213ENST00000561026 STK26Q9P289 416 aa24.03■■□□□ 1.44
SNX1-213ENST00000561026 RAB3GAP2Q9H2M9 1393 aa24.02■■□□□ 1.44
SNX1-213ENST00000561026 IFT172Q9UG01 1749 aa24.02■■□□□ 1.44
SNX1-213ENST00000561026 LRPPRCP42704 1394 aaKnown RBP24.02■■□□□ 1.43
SNX1-213ENST00000561026 PIK3C2GO75747 1445 aa24.01■■□□□ 1.43
SNX1-213ENST00000561026 TMEM132EQ6IEE7 984 aa24.01■■□□□ 1.43
SNX1-213ENST00000561026 PNPLA6Q8IY17 1366 aa24.01■■□□□ 1.43
SNX1-213ENST00000561026 ABCC11Q96J66 1382 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 217.7 ms