RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 ANKRD13AQ8IZ07 590 aa9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 NOP58Q9Y2X3 529 aaKnown RBP9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 KIF27Q86VH2 1401 aa9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 RAPGEF2Q9Y4G8 1499 aa9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 SCNN1AP37088 669 aa9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 PRXQ9BXM0 1461 aa9.05□□□□□ -0.96
TSPAN3-209ENST00000560715 CAMK2BQ13554 666 aa9.04□□□□□ -0.96
TSPAN3-209ENST00000560715 BCCIPQ9P287 314 aaKnown RBP eCLIP9.04□□□□□ -0.96
TSPAN3-209ENST00000560715 CABP2Q9NPB3 220 aa9.04□□□□□ -0.96
TSPAN3-209ENST00000560715 GNPATO15228 680 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 PDE4AP27815 886 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 HIRIP3Q9BW71 556 aaPredicted RBP9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 BCL2L13Q9BXK5 485 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 MFSD10Q14728 455 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 HDGFL1Q5TGJ6 251 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 MICAL1Q8TDZ2 1067 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 VRTNQ9H8Y1 702 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 CUX2O14529 1486 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 FANCD2Q9BXW9 1451 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 LAMC3Q9Y6N6 1575 aa9.03□□□□□ -0.96
TSPAN3-209ENST00000560715 TBC1D12O60347 775 aa9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 RAB11FIP3O75154 756 aa9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 MDM2Q00987 491 aaPredicted RBP9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 VTI1AQ96AJ9 217 aa9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 DNAJC2Q99543 621 aaKnown RBP9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 BEGAINQ9BUH8 593 aa9.02□□□□□ -0.96
TSPAN3-209ENST00000560715 C9orf131Q5VYM1 1079 aa9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 KCNH8Q96L42 1107 aa9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 PHOX2BQ99453 314 aa9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 PRDM10Q9NQV6 1147 aa9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 RTL5Q5HYW3 569 aaPredicted RBP9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 CLIP1P30622 1438 aa9.02□□□□□ -0.97
TSPAN3-209ENST00000560715 TMEM88BA6NKF7 163 aa9.01□□□□□ -0.97
TSPAN3-209ENST00000560715 PDAP1Q13442 181 aaKnown RBP9.01□□□□□ -0.97
TSPAN3-209ENST00000560715 LOC102724159A0A0B4J2E5 919 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 RFC5P40937 340 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 SRPK2P78362 688 aaKnown RBP9□□□□□ -0.97
TSPAN3-209ENST00000560715 PWP2Q15269 919 aaKnown RBP9□□□□□ -0.97
TSPAN3-209ENST00000560715 DNAJC14Q6Y2X3 702 aaPredicted RBP9□□□□□ -0.97
TSPAN3-209ENST00000560715 GNL3Q9BVP2 549 aaKnown RBP eCLIP9□□□□□ -0.97
TSPAN3-209ENST00000560715 USTQ9Y2C2 406 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 DNMBPQ6XZF7 1577 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 C11orf95C9JLR9 678 aaPredicted RBP9□□□□□ -0.97
TSPAN3-209ENST00000560715 CC2D2BQ6DHV5 1058 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 FGD5Q6ZNL6 1462 aa9□□□□□ -0.97
TSPAN3-209ENST00000560715 PATL2C9JE40 543 aaKnown RBP8.99□□□□□ -0.97
TSPAN3-209ENST00000560715 ERCC6Q03468 1493 aa8.99□□□□□ -0.97
TSPAN3-209ENST00000560715 TSPYL2Q9H2G4 693 aaPredicted RBP8.99□□□□□ -0.97
TSPAN3-209ENST00000560715 CLSTN1O94985 981 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 LMOD1P29536 600 aaPredicted RBP8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 FAM161AQ3B820 660 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 NAALADL2Q58DX5 795 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 SLC52A1Q9NWF4 448 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 PAK3O75914 559 aaPredicted RBP8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 PSEN1P49768 467 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 RBM27Q9P2N5 1060 aaKnown RBP8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 VPS8Q8N3P4 1428 aa8.98□□□□□ -0.97
TSPAN3-209ENST00000560715 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 CSPP1Q1MSJ5 1256 aa8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 GLIPR1L2Q4G1C9 344 aa8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 GPATCH3Q96I76 525 aa8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 KLHL42Q9P2K6 505 aa8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 NESP48681 1621 aa8.97□□□□□ -0.97
TSPAN3-209ENST00000560715 PEX14O75381 377 aa8.96□□□□□ -0.97
TSPAN3-209ENST00000560715 MYSM1Q5VVJ2 828 aa8.96□□□□□ -0.97
TSPAN3-209ENST00000560715 FARP1Q9Y4F1 1045 aaPredicted RBP8.96□□□□□ -0.97
TSPAN3-209ENST00000560715 PPME1Q9Y570 386 aa8.96□□□□□ -0.97
TSPAN3-209ENST00000560715 MS4A4AQ96JQ5 239 aa8.96□□□□□ -0.98
TSPAN3-209ENST00000560715 TOPBP1Q92547 1522 aa8.96□□□□□ -0.98
TSPAN3-209ENST00000560715 PDIA6Q15084 440 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 CREBZFQ9NS37 354 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 RIPOR2Q9Y4F9 1068 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 WASHC2AQ641Q2 1341 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 DPH6Q7L8W6 267 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 IGF1RP08069 1367 aa8.95□□□□□ -0.98
TSPAN3-209ENST00000560715 SSTR3P32745 418 aaPredicted RBP8.94□□□□□ -0.98
TSPAN3-209ENST00000560715 SERPINB4P48594 390 aa8.94□□□□□ -0.98
TSPAN3-209ENST00000560715 PPP1R15BQ5SWA1 713 aa8.94□□□□□ -0.98
TSPAN3-209ENST00000560715 DDX12PQ92771 950 aa8.94□□□□□ -0.98
TSPAN3-209ENST00000560715 ABCA10Q8WWZ4 1543 aa8.94□□□□□ -0.98
TSPAN3-209ENST00000560715 PDS5BQ9NTI5 1447 aa8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 WASHC2CQ9Y4E1 1318 aa8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 PALM3A6NDB9 673 aaPredicted RBP8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 TSNAXIP1Q2TAA8 658 aa8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 PPP1R12CQ9BZL4 782 aa8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 PRIM1P49642 420 aaKnown RBP8.93□□□□□ -0.98
TSPAN3-209ENST00000560715 POLA1P09884 1462 aaPredicted RBP8.92□□□□□ -0.98
TSPAN3-209ENST00000560715 NCLP19338 710 aaKnown RBP8.92□□□□□ -0.98
TSPAN3-209ENST00000560715 NLRP6P59044 892 aa8.92□□□□□ -0.98
TSPAN3-209ENST00000560715 UBXN4Q92575 508 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 LIMD1Q9UGP4 676 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 WDR97A6NE52 1622 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 HIC1Q14526 733 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 ARAP1Q96P48 1450 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 CARMIL1Q5VZK9 1371 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 THOC2Q8NI27 1593 aaKnown RBP8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 ZC3H4Q9UPT8 1303 aaKnown RBP8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 KIF21AQ7Z4S6 1674 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 RECKO95980 971 aa8.91□□□□□ -0.98
TSPAN3-209ENST00000560715 ZC3H6P61129 1189 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms